Wall clock time and date at job start Sun Mar 29 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47330 * 2 1 4 4 C 1.50691 * 109.47291 * 239.99569 * 2 1 3 5 5 H 1.08004 * 120.00178 * 245.50791 * 4 2 1 6 6 C 1.37878 * 120.00432 * 65.50337 * 4 2 1 7 7 N 1.31516 * 119.99451 * 8.10324 * 6 4 2 8 8 Si 1.86797 * 120.00238 * 188.10217 * 6 4 2 9 9 H 1.48500 * 109.47065 * 94.99337 * 8 6 4 10 10 H 1.48506 * 109.46890 * 214.99256 * 8 6 4 11 11 H 1.48498 * 109.47238 * 334.99177 * 8 6 4 12 12 N 1.46901 * 109.46612 * 119.99344 * 2 1 3 13 13 C 1.46905 * 111.00014 * 176.04341 * 12 2 1 14 14 C 1.46902 * 111.00601 * 300.00095 * 12 2 1 15 15 C 1.52990 * 109.47199 * 161.73910 * 14 12 2 16 16 H 1.09003 * 110.54591 * 307.63707 * 15 14 12 17 17 C 1.54816 * 110.49110 * 70.25714 * 15 14 12 18 18 C 1.54994 * 102.09234 * 139.55219 * 17 15 14 19 19 O 1.44369 * 103.49392 * 322.97491 * 18 17 15 20 20 C 1.43746 * 106.97519 * 40.06455 * 19 18 17 21 21 H 1.08994 * 109.88183 * 93.05760 * 20 19 18 22 22 C 1.52996 * 109.88056 * 214.06167 * 20 19 18 23 23 H 1.08992 * 109.47733 * 186.68156 * 1 2 3 24 24 H 1.09002 * 109.46997 * 306.68257 * 1 2 3 25 25 H 1.09000 * 109.46788 * 66.68022 * 1 2 3 26 26 H 0.97004 * 119.99962 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47276 * 192.20701 * 13 12 2 28 28 H 1.08999 * 109.47307 * 312.21161 * 13 12 2 29 29 H 1.09001 * 109.46843 * 72.20701 * 13 12 2 30 30 H 1.09002 * 109.46744 * 41.73810 * 14 12 2 31 31 H 1.09000 * 109.46553 * 281.74413 * 14 12 2 32 32 H 1.08999 * 110.90391 * 21.35226 * 17 15 14 33 33 H 1.08998 * 110.93355 * 257.76929 * 17 15 14 34 34 H 1.09003 * 110.61244 * 204.47400 * 18 17 15 35 35 H 1.08994 * 110.61565 * 81.48295 * 18 17 15 36 36 H 1.08999 * 109.47343 * 58.53945 * 22 20 19 37 37 H 1.09004 * 109.47255 * 298.54665 * 22 20 19 38 38 H 1.09001 * 109.47591 * 178.54288 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5780 -1.6375 -1.1337 6 6 1.7955 -0.1771 -2.4795 7 7 1.2743 1.0250 -2.5931 8 14 2.2148 -1.1619 -4.0104 9 1 1.0061 -1.8857 -4.4799 10 1 2.6864 -0.2422 -5.0768 11 1 3.2852 -2.1406 -3.6917 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1873 14 6 1.5485 -0.0262 2.4212 15 6 1.6736 -0.9859 3.6060 16 1 1.1865 -1.9351 3.3825 17 6 3.1624 -1.2123 3.9653 18 6 3.1268 -1.2073 5.5149 19 8 2.1383 -0.2021 5.8259 20 6 1.0701 -0.3560 4.8764 21 1 0.3004 -1.0095 5.2871 22 6 0.4686 1.0108 4.5439 23 1 -0.3634 -1.0206 0.1196 24 1 -0.3633 0.6139 0.8242 25 1 -0.3633 0.4068 -0.9437 26 1 1.1079 1.4004 -3.4719 27 1 3.8073 -1.4903 1.9619 28 1 3.8159 -1.1561 0.2137 29 1 3.9192 0.1871 1.3770 30 1 0.5053 0.2642 2.2974 31 1 2.1532 0.8614 2.6071 32 1 3.7816 -0.3986 3.5878 33 1 3.5126 -2.1727 3.5873 34 1 4.0993 -0.9277 5.9201 35 1 2.8171 -2.1808 5.8947 36 1 1.2451 1.6613 4.1414 37 1 0.0552 1.4558 5.4490 38 1 -0.3230 0.8894 3.8045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602787111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:04 Heat of formation + Delta-G solvation = -40.505923 kcal Electronic energy + Delta-G solvation = -16845.361893 eV Core-core repulsion = 14302.036218 eV Total energy + Delta-G solvation = -2543.325675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75757 -36.85414 -33.42408 -32.03291 -31.31753 -29.08248 -27.17904 -25.45484 -24.50688 -23.06927 -21.77199 -19.84670 -18.94246 -16.54473 -16.23815 -15.57644 -15.28840 -15.01130 -14.20640 -13.83540 -13.42650 -13.03110 -12.79204 -12.36160 -12.29217 -12.10687 -11.69823 -11.43026 -11.20853 -10.97592 -10.88517 -10.65597 -10.58809 -10.33499 -10.21560 -10.17804 -9.92606 -9.61642 -9.51255 -8.84151 -8.44346 -7.15148 -6.03929 -4.05116 3.30182 3.37232 3.40303 4.00186 4.40255 4.69660 4.91899 4.96622 5.20070 5.27426 5.30301 5.47656 5.54174 5.63907 5.75175 5.86109 5.97038 6.04006 6.12797 6.18289 6.21761 6.31028 6.36567 6.48112 6.56331 6.78198 6.84635 6.99067 7.07681 7.13273 7.46884 7.69764 7.82459 8.15223 8.29022 8.62305 9.02547 9.58918 11.05162 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048205 B = 0.006538 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.714309 B = 4281.936119 C = 4661.703284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.209 3.791 3 H 0.004 0.996 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.538 5.538 13 C 0.025 3.975 14 C 0.058 3.942 15 C -0.110 4.110 16 H 0.088 0.912 17 C -0.147 4.147 18 C 0.043 3.957 19 O -0.381 6.381 20 C 0.077 3.923 21 H 0.064 0.936 22 C -0.153 4.153 23 H 0.036 0.964 24 H 0.011 0.989 25 H 0.069 0.931 26 H 0.260 0.740 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -2.908 12.380 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.123 4.123 14 C -0.071 4.071 15 C -0.129 4.129 16 H 0.106 0.894 17 C -0.185 4.185 18 C -0.033 4.033 19 O -0.300 6.300 20 C 0.019 3.981 21 H 0.082 0.918 22 C -0.211 4.211 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.025 0.975 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.876 -3.082 12.381 12.789 hybrid contribution 0.501 0.192 -1.095 1.219 sum 1.377 -2.890 11.286 11.732 Atomic orbital electron populations 1.21784 0.98229 0.98659 0.99832 1.19234 0.91781 0.92567 0.86067 0.97867 1.21130 1.35278 1.07986 0.89944 0.91855 1.24943 0.95484 0.94711 0.99032 1.69974 1.44810 1.14651 1.23681 0.86560 0.78595 0.79951 0.82762 1.20688 1.21410 1.19882 1.62070 1.09308 1.52683 1.02171 1.22561 0.88933 0.98314 1.02524 1.22310 1.01042 0.93719 0.89985 1.22560 0.95347 1.00439 0.94588 0.89395 1.23407 0.97352 1.02948 0.94763 1.23571 0.92504 0.91831 0.95411 1.88837 1.31933 1.55197 1.54040 1.22755 0.89652 0.97233 0.88476 0.91791 1.22020 1.01269 0.96300 1.01464 0.94490 0.96981 0.91258 0.93003 0.92843 0.90436 0.97485 0.90302 0.95594 0.90387 0.90002 0.89528 0.92615 0.91591 0.92658 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.73 37.16 0.32 -2.70 16 2 C 0.21 5.27 1.93 -68.87 -0.13 5.13 16 3 H 0.00 0.10 8.10 -51.93 -0.42 -0.32 16 4 C -0.50 -13.76 7.54 -34.44 -0.26 -14.02 16 5 H 0.06 1.73 6.74 -52.48 -0.35 1.37 16 6 C 0.06 1.65 5.17 -17.82 -0.09 1.56 16 7 N -0.89 -25.61 12.10 55.43 0.67 -24.94 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.54 -11.42 4.56 -236.29 -1.08 -12.50 16 13 C 0.03 0.49 8.17 60.07 0.49 0.98 16 14 C 0.06 1.04 3.27 -3.83 -0.01 1.03 16 15 C -0.11 -1.65 3.26 -89.09 -0.29 -1.94 16 16 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.15 -1.99 4.67 -24.72 -0.12 -2.11 16 18 C 0.04 0.53 7.72 38.21 0.29 0.82 16 19 O -0.38 -5.58 11.19 -35.23 -0.39 -5.98 16 20 C 0.08 1.06 4.05 -26.16 -0.11 0.96 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.15 -2.04 8.38 37.16 0.31 -1.73 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.01 0.24 6.40 -51.93 -0.33 -0.09 16 25 H 0.07 1.81 6.72 -51.93 -0.35 1.46 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.05 0.89 4.79 -51.93 -0.25 0.64 16 28 H 0.08 1.67 6.00 -51.93 -0.31 1.36 16 29 H 0.01 0.13 7.86 -51.93 -0.41 -0.28 16 30 H 0.08 1.43 3.98 -51.93 -0.21 1.22 16 31 H 0.03 0.48 6.70 -51.93 -0.35 0.14 16 32 H 0.08 1.13 6.62 -51.93 -0.34 0.79 16 33 H 0.08 1.05 7.14 -51.93 -0.37 0.67 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.94 6.82 -51.93 -0.35 0.59 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.95 6.77 -51.93 -0.35 0.60 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -28.81 283.38 -7.21 -36.02 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.07 Total: -1.11 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 0.41 Total: -12.01 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.41 Total: -37.44 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.39 Total: -5.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.81 -7.21 -36.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602787111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.482 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds