Wall clock time and date at job start Sun Mar 29 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47330 * 2 1 4 4 C 1.50691 * 109.47291 * 239.99569 * 2 1 3 5 5 H 1.08004 * 120.00178 * 245.50791 * 4 2 1 6 6 C 1.37878 * 120.00432 * 65.50337 * 4 2 1 7 7 N 1.31516 * 119.99451 * 8.10324 * 6 4 2 8 8 Si 1.86797 * 120.00238 * 188.10217 * 6 4 2 9 9 H 1.48500 * 109.47065 * 94.99337 * 8 6 4 10 10 H 1.48506 * 109.46890 * 214.99256 * 8 6 4 11 11 H 1.48498 * 109.47238 * 334.99177 * 8 6 4 12 12 N 1.46901 * 109.46612 * 119.99344 * 2 1 3 13 13 C 1.46905 * 111.00014 * 176.04341 * 12 2 1 14 14 C 1.46902 * 111.00601 * 300.00095 * 12 2 1 15 15 C 1.52990 * 109.47199 * 161.73910 * 14 12 2 16 16 H 1.09003 * 110.54591 * 307.63707 * 15 14 12 17 17 C 1.54816 * 110.49110 * 70.25714 * 15 14 12 18 18 C 1.54994 * 102.09234 * 139.55219 * 17 15 14 19 19 O 1.44369 * 103.49392 * 322.97491 * 18 17 15 20 20 C 1.43746 * 106.97519 * 40.06455 * 19 18 17 21 21 H 1.08994 * 109.88183 * 93.05760 * 20 19 18 22 22 C 1.52996 * 109.88056 * 214.06167 * 20 19 18 23 23 H 1.08992 * 109.47733 * 186.68156 * 1 2 3 24 24 H 1.09002 * 109.46997 * 306.68257 * 1 2 3 25 25 H 1.09000 * 109.46788 * 66.68022 * 1 2 3 26 26 H 0.97004 * 119.99962 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47276 * 192.20701 * 13 12 2 28 28 H 1.08999 * 109.47307 * 312.21161 * 13 12 2 29 29 H 1.09001 * 109.46843 * 72.20701 * 13 12 2 30 30 H 1.09002 * 109.46744 * 41.73810 * 14 12 2 31 31 H 1.09000 * 109.46553 * 281.74413 * 14 12 2 32 32 H 1.08999 * 110.90391 * 21.35226 * 17 15 14 33 33 H 1.08998 * 110.93355 * 257.76929 * 17 15 14 34 34 H 1.09003 * 110.61244 * 204.47400 * 18 17 15 35 35 H 1.08994 * 110.61565 * 81.48295 * 18 17 15 36 36 H 1.08999 * 109.47343 * 58.53945 * 22 20 19 37 37 H 1.09004 * 109.47255 * 298.54665 * 22 20 19 38 38 H 1.09001 * 109.47591 * 178.54288 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5780 -1.6375 -1.1337 6 6 1.7955 -0.1771 -2.4795 7 7 1.2743 1.0250 -2.5931 8 14 2.2148 -1.1619 -4.0104 9 1 1.0061 -1.8857 -4.4799 10 1 2.6864 -0.2422 -5.0768 11 1 3.2852 -2.1406 -3.6917 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1873 14 6 1.5485 -0.0262 2.4212 15 6 1.6736 -0.9859 3.6060 16 1 1.1865 -1.9351 3.3825 17 6 3.1624 -1.2123 3.9653 18 6 3.1268 -1.2073 5.5149 19 8 2.1383 -0.2021 5.8259 20 6 1.0701 -0.3560 4.8764 21 1 0.3004 -1.0095 5.2871 22 6 0.4686 1.0108 4.5439 23 1 -0.3634 -1.0206 0.1196 24 1 -0.3633 0.6139 0.8242 25 1 -0.3633 0.4068 -0.9437 26 1 1.1079 1.4004 -3.4719 27 1 3.8073 -1.4903 1.9619 28 1 3.8159 -1.1561 0.2137 29 1 3.9192 0.1871 1.3770 30 1 0.5053 0.2642 2.2974 31 1 2.1532 0.8614 2.6071 32 1 3.7816 -0.3986 3.5878 33 1 3.5126 -2.1727 3.5873 34 1 4.0993 -0.9277 5.9201 35 1 2.8171 -2.1808 5.8947 36 1 1.2451 1.6613 4.1414 37 1 0.0552 1.4558 5.4490 38 1 -0.3230 0.8894 3.8045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602787111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:04 Heat of formation + Delta-G solvation = -59.484506 kcal Electronic energy + Delta-G solvation = -16846.184866 eV Core-core repulsion = 14302.036218 eV Total energy + Delta-G solvation = -2544.148648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92546 -38.48592 -35.16209 -33.54020 -32.53238 -30.87798 -28.69656 -26.97282 -26.14188 -24.64406 -22.88883 -21.57959 -20.30861 -18.29905 -17.69991 -17.06633 -16.62391 -16.16721 -15.98254 -15.33332 -15.08252 -14.57237 -14.21531 -13.96104 -13.43729 -13.38773 -13.30905 -12.91400 -12.83193 -12.71054 -12.51984 -12.23849 -12.13238 -12.07410 -11.79047 -11.57138 -11.45943 -11.17235 -10.83613 -10.54512 -10.53096 -8.92517 -8.14589 -6.22797 1.41495 1.43129 1.53174 2.42175 2.98120 3.16355 3.30355 3.68474 3.83622 4.09979 4.18386 4.34067 4.43331 4.49084 4.57260 4.62548 4.72956 4.74704 4.76933 4.85790 4.95246 4.99724 5.03740 5.07462 5.10870 5.18873 5.24445 5.29379 5.34571 5.49279 5.71250 5.75382 6.03525 6.21197 6.38511 6.76577 6.93634 7.45653 8.94274 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.048205 B = 0.006538 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.714309 B = 4281.936119 C = 4661.703284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.213 3.787 3 H -0.038 1.038 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.540 5.540 13 C 0.030 3.970 14 C 0.062 3.938 15 C -0.107 4.107 16 H 0.090 0.910 17 C -0.148 4.148 18 C 0.046 3.954 19 O -0.398 6.398 20 C 0.079 3.921 21 H 0.082 0.918 22 C -0.153 4.153 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.261 0.739 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.001 0.999 30 H 0.076 0.924 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -4.348 13.465 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.021 1.021 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.264 5.264 13 C -0.119 4.119 14 C -0.066 4.066 15 C -0.126 4.126 16 H 0.108 0.892 17 C -0.185 4.185 18 C -0.030 4.030 19 O -0.318 6.318 20 C 0.021 3.979 21 H 0.100 0.900 22 C -0.211 4.211 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.055 -4.534 13.487 14.267 hybrid contribution 0.472 0.669 -1.369 1.596 sum 1.528 -3.864 12.117 12.810 Atomic orbital electron populations 1.21603 0.97328 0.99149 0.99255 1.19051 0.92487 0.90386 0.87474 1.02083 1.21412 1.35253 1.07908 0.91098 0.92168 1.25723 0.95457 0.95542 1.02009 1.70095 1.45841 1.16051 1.24339 0.85550 0.78574 0.78571 0.78994 1.20099 1.21178 1.19120 1.62069 1.10155 1.52211 1.02008 1.22567 0.88084 0.98759 1.02446 1.22338 1.00381 0.94119 0.89737 1.22493 0.96800 0.99578 0.93712 0.89164 1.23382 0.95981 1.02970 0.96214 1.23709 0.92913 0.92316 0.94106 1.88825 1.32550 1.56244 1.54178 1.22776 0.89868 0.97458 0.87774 0.90046 1.22012 1.00858 0.96115 1.02070 0.93911 0.94790 0.93950 0.92972 0.89371 0.92650 0.98094 0.90622 0.96602 0.91651 0.88902 0.87888 0.90699 0.93161 0.91357 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.73 71.98 0.63 -4.90 16 2 C 0.21 10.90 1.93 44.17 0.09 10.99 16 3 H -0.04 -2.25 8.10 -2.39 -0.02 -2.27 16 4 C -0.52 -28.57 7.54 25.60 0.19 -28.38 16 5 H 0.06 3.29 6.74 -2.91 -0.02 3.27 16 6 C 0.01 0.63 5.17 84.65 0.44 1.07 16 7 N -0.92 -54.01 12.10 21.45 0.26 -53.75 16 8 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 N -0.54 -22.81 4.56 -901.49 -4.11 -26.92 16 13 C 0.03 1.15 8.17 127.69 1.04 2.20 16 14 C 0.06 2.19 3.27 86.30 0.28 2.47 16 15 C -0.11 -2.98 3.26 -9.80 -0.03 -3.01 16 16 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 17 C -0.15 -3.65 4.67 31.90 0.15 -3.50 16 18 C 0.05 0.97 7.72 72.66 0.56 1.53 16 19 O -0.40 -10.68 11.19 -148.98 -1.67 -12.34 16 20 C 0.08 2.01 4.05 30.97 0.13 2.13 16 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 22 C -0.15 -3.87 8.38 71.98 0.60 -3.26 16 23 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.03 1.43 6.40 -2.39 -0.02 1.41 16 25 H 0.04 2.24 6.72 -2.39 -0.02 2.22 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.09 2.80 4.79 -2.39 -0.01 2.78 16 28 H 0.05 2.39 6.00 -2.39 -0.01 2.38 16 29 H 0.00 0.02 7.86 -2.39 -0.02 0.00 16 30 H 0.08 2.69 3.98 -2.39 -0.01 2.68 16 31 H 0.02 0.59 6.70 -2.39 -0.02 0.58 16 32 H 0.06 1.79 6.62 -2.39 -0.02 1.77 16 33 H 0.09 2.08 7.14 -2.39 -0.02 2.06 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.41 6.82 -2.39 -0.02 1.39 16 37 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.08 1.86 6.77 -2.39 -0.02 1.84 16 Total: -1.00 -61.59 283.38 1.61 -59.98 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.03 Total: 9.95 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 4.08 Total: -22.67 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -3.85 Total: -80.68 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.67 Total: -12.34 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.59 1.61 -59.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602787111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.497 kcal (2) G-P(sol) polarization free energy of solvation -61.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds