Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.50688 * 2 1 4 4 C 1.53124 * 109.50176 * 239.92027 * 2 1 3 5 5 C 1.53116 * 109.15948 * 297.67328 * 4 2 1 6 6 C 1.53035 * 109.28041 * 302.34309 * 5 4 2 7 7 N 1.46849 * 109.51982 * 59.18099 * 6 5 4 8 8 C 1.46909 * 111.00079 * 174.15973 * 7 6 5 9 9 C 1.52997 * 109.46832 * 65.70048 * 8 7 6 10 10 C 1.50696 * 109.46832 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00664 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00049 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99836 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99999 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47204 * 90.00304 * 14 12 10 16 16 H 1.48505 * 109.46975 * 209.99807 * 14 12 10 17 17 H 1.48492 * 109.47226 * 329.99919 * 14 12 10 18 18 C 1.46842 * 111.23555 * 298.27692 * 7 6 5 19 19 H 1.08999 * 109.42869 * 301.68521 * 18 7 6 20 20 C 1.53003 * 109.50095 * 181.72038 * 18 7 6 21 21 O 1.42892 * 109.47024 * 67.27935 * 20 18 7 22 22 H 1.09001 * 109.47506 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47422 * 299.99870 * 1 2 3 24 24 H 1.09003 * 109.47430 * 60.00202 * 1 2 3 25 25 H 1.09003 * 109.52184 * 57.58137 * 4 2 1 26 26 H 1.08997 * 109.51961 * 177.70772 * 4 2 1 27 27 H 1.08999 * 109.50218 * 62.29140 * 5 4 2 28 28 H 1.09002 * 109.50310 * 182.40687 * 5 4 2 29 29 H 1.09000 * 109.46201 * 179.19468 * 6 5 4 30 30 H 1.08998 * 109.46567 * 299.17027 * 6 5 4 31 31 H 1.08994 * 109.47065 * 185.70569 * 8 7 6 32 32 H 1.08999 * 109.46537 * 305.70522 * 8 7 6 33 33 H 1.08994 * 109.47721 * 300.00119 * 9 8 7 34 34 H 1.09009 * 109.47124 * 60.00887 * 9 8 7 35 35 H 0.97001 * 119.99737 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47117 * 187.28533 * 20 18 7 37 37 H 1.09009 * 109.46500 * 307.28370 * 20 18 7 38 38 H 0.96702 * 113.99805 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 -1.2490 5 6 1.5757 -2.1817 -1.2110 6 6 2.0862 -2.8417 0.0719 7 7 1.5691 -2.1136 1.2376 8 6 1.9247 -2.7996 2.4871 9 6 3.4430 -2.7671 2.6724 10 6 3.8077 -3.4703 3.9544 11 1 3.0340 -3.8980 4.5747 12 6 5.1292 -3.5677 4.3354 13 7 6.0714 -3.0465 3.5803 14 14 5.5813 -4.4400 5.9242 15 1 5.8127 -5.8809 5.6493 16 1 6.8179 -3.8383 6.4847 17 1 4.4729 -4.2942 6.9016 18 6 2.0409 -0.7230 1.2483 19 1 3.1308 -0.7100 1.2550 20 6 1.5152 -0.0149 2.4986 21 8 2.1265 -0.5813 3.6593 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6435 -0.2372 -2.1399 26 1 3.1303 -0.6882 -1.2701 27 1 0.4864 -2.2166 -1.2297 28 1 1.9723 -2.7129 -2.0762 29 1 1.7444 -3.8761 0.1089 30 1 3.1758 -2.8187 0.0834 31 1 1.4452 -2.2967 3.3268 32 1 1.5862 -3.8347 2.4421 33 1 3.9224 -3.2701 1.8326 34 1 3.7815 -1.7319 2.7173 35 1 7.0011 -3.1153 3.8482 36 1 1.7553 1.0469 2.4428 37 1 0.4340 -0.1403 2.5595 38 1 1.8395 -0.1795 4.4907 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602990571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -79.804947 kcal Electronic energy + Delta-G solvation = -17223.608290 eV Core-core repulsion = 14678.578481 eV Total energy + Delta-G solvation = -2545.029809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88719 -37.31111 -36.08121 -34.47944 -32.93177 -30.85195 -28.25772 -27.10539 -25.97159 -24.24281 -22.78757 -21.63807 -19.32358 -18.44736 -18.10960 -16.92767 -16.62663 -16.41599 -15.55732 -15.17525 -14.86791 -14.46939 -14.36203 -14.25464 -13.90713 -13.42233 -13.02287 -12.85626 -12.72481 -12.66625 -12.48092 -12.18071 -11.94870 -11.78964 -11.65577 -11.41732 -11.23462 -11.02369 -10.85690 -10.60463 -10.25468 -8.98183 -8.13637 -6.22737 1.37393 1.39494 1.50609 2.42623 3.13864 3.18559 3.49557 3.83152 3.99976 4.15891 4.31198 4.42101 4.45201 4.55093 4.57453 4.66919 4.75922 4.80920 4.90629 4.97628 5.00013 5.10473 5.12397 5.19188 5.26553 5.31706 5.36145 5.46159 5.62042 5.69551 5.83406 5.93343 6.16176 6.41068 6.48901 6.95122 7.12713 7.43754 8.97872 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.007705 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.986118 B = 3632.976410 C = 3931.774017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.107 4.107 6 C 0.048 3.952 7 N -0.517 5.517 8 C 0.067 3.933 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.055 0.945 12 C -0.005 4.005 13 N -0.939 5.939 14 Si 0.963 3.037 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.261 1.261 18 C 0.084 3.916 19 H 0.004 0.996 20 C 0.081 3.919 21 O -0.570 6.570 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.065 0.935 30 H -0.001 1.001 31 H 0.096 0.904 32 H 0.037 0.963 33 H -0.038 1.038 34 H 0.006 0.994 35 H 0.259 0.741 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 7.359 -7.089 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.080 4.080 7 N -0.240 5.240 8 C -0.060 4.060 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.201 4.201 13 N -0.581 5.581 14 Si 0.788 3.212 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.185 1.185 18 C -0.025 4.025 19 H 0.022 0.978 20 C 0.004 3.996 21 O -0.376 6.376 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.114 0.886 32 H 0.056 0.944 33 H -0.020 1.020 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.305 7.026 -7.588 16.073 hybrid contribution 1.752 -0.328 1.320 2.218 sum -10.552 6.698 -6.268 13.982 Atomic orbital electron populations 1.21744 0.92846 1.02565 1.01760 1.21156 0.98035 0.98316 0.92305 0.90168 1.21617 0.99525 0.95845 0.98240 1.21589 1.02130 0.95582 0.95123 1.22121 0.95850 0.97974 0.92080 1.62456 1.57657 1.01618 1.02304 1.22320 0.95341 0.96335 0.92006 1.19312 0.93394 0.95226 0.93676 1.21563 0.92243 1.34691 1.07359 0.92697 1.25962 0.96679 0.96760 1.00747 1.70138 1.00349 1.47501 1.40109 0.85478 0.77764 0.78417 0.79523 1.20097 1.20964 1.18544 1.21702 0.95714 0.89549 0.95556 0.97799 1.22265 0.96968 0.95483 0.84918 1.87036 1.70644 1.62907 1.17060 0.92115 0.92509 0.91465 0.89017 0.94190 0.89651 0.90758 0.91681 0.98267 0.88609 0.94419 1.02009 0.97528 0.93283 0.92356 0.91490 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.38 71.98 0.60 -2.18 16 2 C -0.08 -2.05 2.74 -10.74 -0.03 -2.08 16 3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.11 -2.89 5.51 30.67 0.17 -2.72 16 5 C -0.11 -2.84 5.74 30.64 0.18 -2.66 16 6 C 0.05 1.77 5.04 86.32 0.44 2.20 16 7 N -0.52 -19.52 3.98 -871.11 -3.47 -22.98 16 8 C 0.07 3.06 4.68 86.30 0.40 3.47 16 9 C 0.02 1.25 3.67 29.85 0.11 1.36 16 10 C -0.52 -31.29 9.11 25.60 0.23 -31.06 16 11 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 12 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 13 N -0.94 -60.57 13.29 21.45 0.28 -60.28 16 14 Si 0.96 46.50 29.54 68.60 2.03 48.53 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 18 C 0.08 2.96 1.52 44.94 0.07 3.02 16 19 H 0.00 0.18 6.61 -2.39 -0.02 0.16 16 20 C 0.08 2.51 5.66 71.98 0.41 2.92 16 21 O -0.57 -21.46 8.49 -148.98 -1.26 -22.72 16 22 H 0.06 1.44 6.01 -2.39 -0.01 1.42 16 23 H 0.06 1.12 6.59 -2.39 -0.02 1.10 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 2.02 6.58 -2.39 -0.02 2.01 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.00 -0.05 6.75 -2.39 -0.02 -0.06 16 31 H 0.10 4.28 5.40 -2.39 -0.01 4.27 16 32 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 33 H -0.04 -2.43 6.67 -2.39 -0.02 -2.44 16 34 H 0.01 0.40 5.30 -2.38 -0.01 0.39 16 35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.81 6.84 -2.38 -0.02 1.79 16 38 H 0.38 10.49 9.12 -74.06 -0.68 9.81 16 Total: -1.00 -72.50 281.02 0.98 -71.51 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.36 Total: 13.53 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.04 Total: -27.59 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.18 Total: -83.26 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.26 Total: -22.72 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -72.50 0.98 -71.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602990571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.290 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds