Wall clock time and date at job start Sun Mar 29 2020 21:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47325 * 239.99944 * 2 1 3 5 5 O 1.42904 * 109.46955 * 120.00205 * 2 1 3 6 6 C 1.42893 * 114.00249 * 60.00046 * 5 2 1 7 7 C 1.53000 * 109.47233 * 179.97438 * 6 5 2 8 8 N 1.46500 * 109.47267 * 64.99458 * 7 6 5 9 9 C 1.36937 * 120.00455 * 270.00532 * 8 7 6 10 10 H 1.08005 * 119.99914 * 144.72817 * 9 8 7 11 11 C 1.38808 * 119.99835 * 324.73099 * 9 8 7 12 12 N 1.31620 * 119.99987 * 338.10177 * 11 9 8 13 13 Si 1.86802 * 119.99895 * 158.10379 * 11 9 8 14 14 H 1.48504 * 109.47104 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46948 * 119.99901 * 13 11 9 16 16 H 1.48496 * 109.46942 * 239.99831 * 13 11 9 17 17 C 1.46507 * 119.99672 * 90.00216 * 8 7 6 18 18 C 1.53000 * 117.49942 * 183.24356 * 17 8 7 19 19 C 1.52995 * 117.50035 * 114.57856 * 17 8 7 20 20 H 1.09001 * 109.47016 * 299.99846 * 1 2 3 21 21 H 1.09004 * 109.47142 * 60.00148 * 1 2 3 22 22 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47213 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46788 * 300.00431 * 3 2 1 25 25 H 1.09001 * 109.47016 * 60.00154 * 3 2 1 26 26 H 1.09003 * 109.46780 * 300.00701 * 4 2 1 27 27 H 1.09000 * 109.46790 * 59.99484 * 4 2 1 28 28 H 1.08996 * 109.47305 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47079 * 60.00077 * 6 5 2 30 30 H 1.09002 * 109.46895 * 299.99577 * 6 5 2 31 31 H 1.08998 * 109.47096 * 305.00024 * 7 6 5 32 32 H 1.08997 * 109.47277 * 184.99735 * 7 6 5 33 33 H 0.96995 * 119.99672 * 175.90382 * 12 11 9 34 34 H 1.09002 * 115.54774 * 328.91030 * 17 8 7 35 35 H 1.08995 * 117.49927 * 359.97438 * 18 17 8 36 36 H 1.08997 * 117.49938 * 145.02209 * 18 17 8 37 37 H 1.08998 * 117.49946 * 214.98116 * 19 17 8 38 38 H 1.09005 * 117.49579 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1506 -2.6540 2.5444 8 7 1.5685 -1.9835 3.7096 9 6 2.1824 -0.8819 4.2433 10 1 1.5886 -0.0796 4.6559 11 6 3.5678 -0.7964 4.2539 12 7 4.2953 -1.8899 4.1682 13 14 4.3997 0.8706 4.3899 14 1 3.3665 1.9341 4.4730 15 1 5.2436 0.9045 5.6113 16 1 5.2501 1.0984 3.1941 17 6 0.3294 -2.4914 4.3039 18 6 -0.2691 -1.7037 5.4710 19 6 0.4061 -3.0540 5.7246 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6766 -1.7489 -1.2492 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7209 -1.2495 29 1 1.9492 -2.5916 0.4007 30 1 0.4958 -2.0777 1.2908 31 1 3.2336 -2.5323 2.5587 32 1 1.9038 -3.7153 2.5750 33 1 5.2617 -1.8265 4.1157 34 1 -0.3635 -2.9682 3.6105 35 1 0.2592 -0.8078 5.7970 36 1 -1.3557 -1.6626 5.5458 37 1 -0.2366 -3.9005 5.9661 38 1 1.3786 -3.0465 6.2170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604541080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:20 Heat of formation + Delta-G solvation = -3.888194 kcal Electronic energy + Delta-G solvation = -17087.593828 eV Core-core repulsion = 14545.856016 eV Total energy + Delta-G solvation = -2541.737811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.35422 -36.80556 -33.76527 -32.47299 -30.54030 -27.86465 -27.06458 -26.79149 -24.12040 -21.59959 -21.15975 -19.71391 -19.16913 -16.24189 -16.00071 -15.23310 -14.87481 -14.30877 -14.15376 -13.73114 -13.43644 -12.88584 -12.38138 -12.30421 -11.79739 -11.74166 -11.56815 -11.37297 -11.25550 -11.03820 -10.71738 -10.60497 -10.58449 -10.29206 -10.03953 -9.92269 -9.51912 -9.44684 -9.20223 -8.62130 -8.28623 -6.42416 -5.61979 -3.19858 3.47794 3.55291 3.58751 4.47556 4.62191 5.01747 5.21860 5.24853 5.34988 5.44587 5.54804 5.78298 5.81860 5.95487 5.98024 6.04022 6.13330 6.14477 6.17217 6.21611 6.25398 6.34818 6.40644 6.54917 6.61273 6.66767 6.69758 6.77917 6.84195 7.11584 7.28994 7.75231 7.95332 8.23443 8.64767 9.30230 9.95230 10.48287 11.35387 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.012195 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.486928 B = 2295.511810 C = 3072.032627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 C -0.134 4.134 4 C -0.175 4.175 5 O -0.337 6.337 6 C 0.046 3.954 7 C 0.142 3.858 8 N -0.545 5.545 9 C -0.231 4.231 10 H 0.061 0.939 11 C 0.016 3.984 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.288 1.288 17 C 0.121 3.879 18 C -0.196 4.196 19 C -0.224 4.224 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.108 0.892 32 H 0.039 0.961 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 1.206 -8.026 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.058 3.942 3 C -0.191 4.191 4 C -0.232 4.232 5 O -0.255 6.255 6 C -0.033 4.033 7 C 0.015 3.985 8 N -0.261 5.261 9 C -0.361 4.361 10 H 0.078 0.922 11 C -0.183 4.183 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.223 1.223 16 H -0.215 1.215 17 C 0.012 3.988 18 C -0.235 4.235 19 C -0.265 4.265 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.979 1.288 -7.858 9.957 hybrid contribution 0.242 0.663 -0.187 0.730 sum -5.737 1.950 -8.045 10.072 Atomic orbital electron populations 1.22359 0.96703 1.01964 1.01799 1.21389 0.92614 0.93321 0.86850 1.21689 1.01721 0.94152 1.01581 1.22411 1.01966 1.00839 0.97987 1.88313 1.73143 1.24066 1.39999 1.23385 0.97386 0.83153 0.99393 1.21076 1.02852 0.91759 0.82763 1.43320 1.23172 1.31107 1.28525 1.18894 0.88463 0.93933 1.34806 0.92174 1.24946 0.96890 0.96302 1.00169 1.70025 1.04707 1.26077 1.52704 0.86353 0.79335 0.84956 0.76835 1.20255 1.22321 1.21488 1.21196 0.91547 0.99057 0.86998 1.23012 0.97468 0.96616 1.06356 1.23378 1.01654 0.95038 1.06398 0.91788 0.92819 0.92603 0.92198 0.92262 0.91831 0.92500 0.92600 0.92071 0.95571 0.95233 0.87443 0.94229 0.93939 0.89945 0.88485 0.90964 0.91396 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 8.25 37.16 0.31 -2.27 16 2 C 0.10 1.67 1.14 -90.62 -0.10 1.57 16 3 C -0.13 -2.12 8.84 37.16 0.33 -1.79 16 4 C -0.17 -2.54 8.25 37.16 0.31 -2.23 16 5 O -0.34 -7.33 9.46 -35.23 -0.33 -7.66 16 6 C 0.05 0.93 5.48 37.16 0.20 1.13 16 7 C 0.14 3.35 5.76 -4.04 -0.02 3.32 16 8 N -0.54 -13.64 2.76 -165.66 -0.46 -14.10 16 9 C -0.23 -6.36 8.13 -15.06 -0.12 -6.48 16 10 H 0.06 1.69 6.56 -52.48 -0.34 1.35 16 11 C 0.02 0.45 4.97 -17.43 -0.09 0.36 16 12 N -0.89 -26.00 11.33 55.49 0.63 -25.37 16 13 Si 0.89 22.58 29.61 -169.99 -5.03 17.55 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 C 0.12 2.65 6.56 -67.93 -0.45 2.21 16 18 C -0.20 -4.00 9.80 -26.69 -0.26 -4.26 16 19 C -0.22 -4.67 10.36 -26.69 -0.28 -4.95 16 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.83 6.54 -51.93 -0.34 0.49 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.48 6.42 -51.93 -0.33 0.15 16 30 H 0.03 0.58 6.42 -51.93 -0.33 0.24 16 31 H 0.11 2.91 5.36 -51.93 -0.28 2.63 16 32 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.25 7.09 8.32 -40.82 -0.34 6.75 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.10 2.16 6.37 -51.93 -0.33 1.83 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -29.48 302.18 -7.32 -36.80 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.50 Total: 1.62 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.17 Total: -13.40 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.17 Total: -39.47 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.33 Total: -7.66 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.48 -7.32 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.913 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds