Wall clock time and date at job start Sun Mar 29 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 C 1.53003 * 109.47335 * 180.02562 * 3 2 1 5 5 O 1.42890 * 109.47237 * 179.97438 * 4 3 2 6 6 C 1.42908 * 114.00130 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47312 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47159 * 65.00192 * 7 6 5 9 9 C 1.36942 * 120.00151 * 270.00234 * 8 7 6 10 10 H 1.08001 * 120.00152 * 141.34132 * 9 8 7 11 11 C 1.38812 * 119.99730 * 321.33957 * 9 8 7 12 12 N 1.31615 * 119.99852 * 157.87885 * 11 9 8 13 13 Si 1.86797 * 120.00017 * 337.87431 * 11 9 8 14 14 H 1.48494 * 109.47472 * 95.67706 * 13 11 9 15 15 H 1.48510 * 109.47018 * 215.67874 * 13 11 9 16 16 H 1.48501 * 109.46998 * 335.67184 * 13 11 9 17 17 C 1.46500 * 119.99967 * 89.99842 * 8 7 6 18 18 C 1.53001 * 117.49945 * 183.19512 * 17 8 7 19 19 C 1.52996 * 117.50188 * 114.53358 * 17 8 7 20 20 H 1.09006 * 109.47134 * 299.99814 * 1 2 3 21 21 H 1.08996 * 109.47596 * 59.99810 * 1 2 3 22 22 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46648 * 240.00036 * 2 1 3 24 24 H 1.08997 * 109.46894 * 119.99942 * 2 1 3 25 25 H 1.08997 * 109.47413 * 59.99673 * 3 2 1 26 26 H 1.09008 * 109.47092 * 300.00211 * 3 2 1 27 27 H 1.08996 * 109.46972 * 59.99716 * 4 3 2 28 28 H 1.08997 * 109.46371 * 299.99743 * 4 3 2 29 29 H 1.08995 * 109.46594 * 60.00170 * 6 5 4 30 30 H 1.08998 * 109.46769 * 300.00215 * 6 5 4 31 31 H 1.09001 * 109.47470 * 305.00491 * 7 6 5 32 32 H 1.08995 * 109.47306 * 185.00274 * 7 6 5 33 33 H 0.96999 * 119.99883 * 180.02562 * 12 11 9 34 34 H 1.09001 * 115.54827 * 328.86011 * 17 8 7 35 35 H 1.08996 * 117.50155 * 359.97438 * 18 17 8 36 36 H 1.09005 * 117.50266 * 145.02194 * 18 17 8 37 37 H 1.08998 * 117.50344 * 214.98119 * 19 17 8 38 38 H 1.09008 * 117.49583 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 -0.0012 6 6 5.4709 2.9026 -0.0013 7 6 5.8654 4.3808 -0.0013 8 7 5.4275 5.0032 1.2505 9 6 4.1842 5.5711 1.3345 10 1 3.6031 5.4675 2.2389 11 6 3.6709 6.2802 0.2572 12 7 2.3710 6.4502 0.1405 13 14 4.8250 6.9931 -1.0270 14 1 4.9341 6.0529 -2.1712 15 1 4.2913 8.2941 -1.5045 16 1 6.1673 7.1994 -0.4261 17 6 6.3195 5.0178 2.4125 18 6 5.7768 5.6156 3.7122 19 6 6.8252 6.3778 2.8979 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 3.9330 0.9288 -0.8908 28 1 3.9336 0.9286 0.8891 29 1 5.8736 2.4187 -0.8911 30 1 5.8737 2.4194 0.8889 31 1 5.3895 4.8840 -0.8430 32 1 6.9482 4.4680 -0.0910 33 1 2.0123 6.9453 -0.6125 34 1 6.9993 4.1697 2.4940 35 1 4.7563 5.9983 3.7026 36 1 6.1000 5.1611 4.6488 37 1 7.8376 6.4244 3.2990 38 1 6.4945 7.2616 2.3523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609203849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:21 Heat of formation + Delta-G solvation = -26.267313 kcal Electronic energy + Delta-G solvation = -16450.324350 eV Core-core repulsion = 13907.616107 eV Total energy + Delta-G solvation = -2542.708243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36932 -38.37978 -35.97746 -35.06855 -33.36641 -30.52815 -29.06561 -26.04936 -24.16145 -23.71565 -22.90583 -21.90872 -21.33263 -18.42814 -17.63479 -17.38590 -16.85108 -16.73295 -15.65832 -15.49912 -15.38117 -14.54733 -14.30472 -14.22908 -13.83584 -13.55398 -13.42385 -12.85762 -12.64433 -12.41177 -12.28464 -12.15753 -11.90310 -11.86421 -11.69119 -11.54210 -11.50687 -11.20907 -10.93508 -10.54582 -10.27900 -8.54973 -8.09188 -5.45918 1.30024 1.39743 1.50629 2.47689 2.94323 3.06185 3.27679 3.42095 4.00178 4.09625 4.23680 4.29194 4.36010 4.39104 4.42519 4.46174 4.49139 4.55600 4.63831 4.71783 4.77201 4.92778 4.95509 4.95894 5.04484 5.08072 5.08567 5.25339 5.34125 5.35894 5.46058 5.56195 6.03805 6.28154 6.64611 7.08921 7.73299 8.12172 9.10812 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.008285 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.139435 B = 3378.638085 C = 3811.521706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.115 4.115 4 C 0.059 3.941 5 O -0.395 6.395 6 C 0.050 3.950 7 C 0.127 3.873 8 N -0.582 5.582 9 C -0.224 4.224 10 H 0.035 0.965 11 C -0.015 4.015 12 N -0.948 5.948 13 Si 0.934 3.066 14 H -0.279 1.279 15 H -0.314 1.314 16 H -0.255 1.255 17 C 0.104 3.896 18 C -0.189 4.189 19 C -0.211 4.211 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.092 0.908 33 H 0.257 0.743 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 -12.064 0.097 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.153 4.153 4 C -0.018 4.018 5 O -0.314 6.314 6 C -0.028 4.028 7 C 0.002 3.998 8 N -0.301 5.301 9 C -0.355 4.355 10 H 0.053 0.947 11 C -0.210 4.210 12 N -0.593 5.593 13 Si 0.763 3.237 14 H -0.206 1.206 15 H -0.243 1.243 16 H -0.179 1.179 17 C -0.003 4.003 18 C -0.227 4.227 19 C -0.251 4.251 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.292 -11.853 -0.004 13.419 hybrid contribution -0.083 0.757 -0.666 1.012 sum 6.210 -11.096 -0.671 12.733 Atomic orbital electron populations 1.21766 0.95146 1.02415 1.01576 1.21394 0.96498 0.93959 1.02921 1.21496 0.94119 0.98329 1.01382 1.22568 0.95058 0.84146 1.00007 1.88235 1.21808 1.26140 1.95219 1.23186 0.81446 0.98467 0.99732 1.21463 0.98433 0.91518 0.88340 1.43680 1.13487 1.63838 1.09139 1.18289 0.90849 1.25576 1.00737 0.94732 1.25933 0.96185 0.98603 1.00326 1.70008 1.12662 1.44467 1.32123 0.85990 0.81002 0.76720 0.79942 1.20649 1.24297 1.17949 1.21529 0.95880 0.95037 0.87875 1.23020 0.98373 1.05695 0.95610 1.23360 0.98489 0.97821 1.05450 0.93479 0.93160 0.90657 0.90606 0.91014 0.93877 0.93316 0.92578 0.93298 0.92266 0.92973 0.94682 0.88980 0.93457 0.85551 0.91770 0.86996 0.86904 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.11 -2.63 5.93 30.59 0.18 -2.45 16 3 C -0.12 -3.89 5.58 30.59 0.17 -3.72 16 4 C 0.06 1.99 5.94 71.98 0.43 2.41 16 5 O -0.39 -17.58 9.82 -148.98 -1.46 -19.04 16 6 C 0.05 1.85 6.28 71.98 0.45 2.30 16 7 C 0.13 5.31 4.98 86.38 0.43 5.74 16 8 N -0.58 -27.42 2.37 -678.04 -1.61 -29.03 16 9 C -0.22 -12.99 8.46 84.03 0.71 -12.28 16 10 H 0.04 2.27 6.86 -2.91 -0.02 2.25 16 11 C -0.01 -0.89 5.30 84.86 0.45 -0.44 16 12 N -0.95 -61.70 13.97 21.65 0.30 -61.40 16 13 Si 0.93 47.93 25.07 68.60 1.72 49.65 16 14 H -0.28 -13.80 6.69 99.48 0.67 -13.13 16 15 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 16 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 17 C 0.10 4.01 6.56 44.99 0.30 4.30 16 18 C -0.19 -7.14 9.80 30.62 0.30 -6.84 16 19 C -0.21 -7.64 10.36 30.62 0.32 -7.32 16 20 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.67 3.41 -2.39 -0.01 1.66 16 32 H 0.09 3.13 8.07 -2.39 -0.02 3.11 16 33 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 34 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.06 2.95 6.45 -2.39 -0.02 2.93 16 36 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 37 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -71.00 306.47 4.35 -66.65 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.95 Total: 14.14 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.45 Total: -20.97 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.31 Total: -90.43 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.46 Total: -19.04 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.72 Total: 49.65 kcal Total: -71.00 4.35 -66.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609203849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.378 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds