Wall clock time and date at job start Sun Mar 29 2020 22:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 O 1.42897 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99687 * 180.02562 * 4 3 2 6 6 H 1.09004 * 108.44873 * 330.00044 * 5 4 3 7 7 C 1.52571 * 108.39066 * 212.38033 * 5 4 3 8 8 C 1.50874 * 109.36164 * 153.82225 * 7 5 4 9 9 C 1.53952 * 110.09422 * 91.88427 * 8 7 5 10 10 N 1.47604 * 112.14387 * 319.43633 * 9 8 7 11 11 C 1.36939 * 118.64367 * 137.84351 * 10 9 8 12 12 H 1.07992 * 119.99683 * 206.52985 * 11 10 9 13 13 C 1.38805 * 119.99716 * 26.52782 * 11 10 9 14 14 N 1.31621 * 120.00264 * 15.66820 * 13 11 10 15 15 Si 1.86800 * 119.99793 * 195.66153 * 13 11 10 16 16 H 1.48504 * 109.47321 * 60.00552 * 15 13 11 17 17 H 1.48504 * 109.47144 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47403 * 300.00507 * 15 13 11 19 19 C 1.44577 * 122.71059 * 317.86666 * 10 9 8 20 20 C 1.47089 * 108.51643 * 87.68991 * 5 4 3 21 21 H 1.09002 * 109.46914 * 60.00239 * 1 2 3 22 22 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47524 * 300.00392 * 1 2 3 24 24 H 1.08999 * 109.47220 * 240.00035 * 2 1 3 25 25 H 1.09002 * 109.46914 * 119.99761 * 2 1 3 26 26 H 1.09002 * 109.47223 * 59.99424 * 3 2 1 27 27 H 1.08996 * 109.47306 * 300.00041 * 3 2 1 28 28 H 1.08996 * 109.48785 * 273.79315 * 7 5 4 29 29 H 1.09004 * 109.48957 * 33.85677 * 7 5 4 30 30 H 1.09000 * 109.36968 * 331.69671 * 8 7 5 31 31 H 1.09000 * 109.26685 * 212.01093 * 8 7 5 32 32 H 1.09002 * 108.94673 * 198.75098 * 9 8 7 33 33 H 1.09001 * 108.94426 * 80.12113 * 9 8 7 34 34 H 0.97006 * 120.00132 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.45315 * 330.68836 * 19 10 9 36 36 H 1.08999 * 109.45052 * 210.76263 * 19 10 9 37 37 H 1.09000 * 109.32734 * 304.16474 * 20 5 4 38 38 H 1.09003 * 109.32848 * 63.80794 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0012 6 1 3.3726 3.4275 -0.5158 7 6 5.3633 2.6907 -0.7736 8 6 5.6687 4.0546 -1.3417 9 6 6.5406 4.8546 -0.3569 10 7 6.1143 4.6660 1.0436 11 6 7.0747 4.4994 2.0054 12 1 6.8452 3.9541 2.9088 13 6 8.3431 5.0314 1.8189 14 7 8.5449 5.9423 0.8904 15 14 9.7639 4.4548 2.8860 16 1 9.9577 2.9937 2.7050 17 1 11.0028 5.1716 2.4903 18 1 9.4606 4.7412 4.3112 19 6 4.7245 4.6493 1.4417 20 6 4.1882 3.1972 1.3950 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9564 -0.8899 28 1 6.1678 2.3872 -0.1037 29 1 5.2748 1.9697 -1.5863 30 1 4.7359 4.5907 -1.5163 31 1 6.2018 3.9399 -2.2855 32 1 6.4761 5.9136 -0.6069 33 1 7.5766 4.5312 -0.4581 34 1 9.4312 6.3143 0.7604 35 1 4.1444 5.2724 0.7611 36 1 4.6328 5.0376 2.4560 37 1 3.2156 3.1558 1.8854 38 1 4.8841 2.5413 1.9182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609389893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:20 Heat of formation + Delta-G solvation = -43.587405 kcal Electronic energy + Delta-G solvation = -16640.977884 eV Core-core repulsion = 14097.518585 eV Total energy + Delta-G solvation = -2543.459298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.87811 -36.53703 -33.96473 -32.58143 -31.58949 -30.07013 -26.50275 -25.47541 -23.94987 -22.92654 -21.50515 -19.86093 -19.16621 -16.83672 -16.25196 -15.60302 -15.25602 -14.61623 -14.01436 -13.73319 -13.46332 -13.41378 -12.88700 -12.47633 -12.20801 -12.07030 -11.68398 -11.40102 -11.17288 -11.10417 -10.83942 -10.75969 -10.56001 -10.40811 -10.15551 -9.90628 -9.76737 -9.69631 -9.56573 -9.05019 -8.35397 -6.62327 -5.73740 -3.17290 3.41495 3.46978 3.49055 3.96672 4.54260 4.93878 5.01074 5.24342 5.35027 5.39104 5.46900 5.54251 5.56326 5.66932 5.72921 5.86398 5.89790 6.05957 6.08386 6.11652 6.12591 6.25747 6.46108 6.50784 6.63262 6.70223 6.82394 6.89267 7.00193 7.14480 7.48164 7.69412 7.74701 7.87039 8.51858 9.28779 9.95580 10.40627 11.33685 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043579 B = 0.006226 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.356789 B = 4496.070453 C = 4726.270110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.062 3.938 4 O -0.395 6.395 5 C 0.111 3.889 6 H 0.040 0.960 7 C -0.101 4.101 8 C -0.141 4.141 9 C 0.177 3.823 10 N -0.590 5.590 11 C -0.258 4.258 12 H 0.064 0.936 13 C 0.005 3.995 14 N -0.905 5.905 15 Si 0.901 3.099 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.283 1.283 19 C 0.162 3.838 20 C -0.168 4.168 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.031 0.969 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 -7.307 -3.341 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.015 4.015 4 O -0.315 6.315 5 C 0.054 3.946 6 H 0.058 0.942 7 C -0.139 4.139 8 C -0.180 4.180 9 C 0.052 3.948 10 N -0.311 5.311 11 C -0.388 4.388 12 H 0.082 0.918 13 C -0.194 4.194 14 N -0.550 5.550 15 Si 0.730 3.270 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.209 1.209 19 C 0.033 3.967 20 C -0.208 4.208 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.728 -7.348 -3.407 14.253 hybrid contribution 0.582 -0.044 0.552 0.804 sum -11.146 -7.392 -2.855 13.676 Atomic orbital electron populations 1.21697 0.95209 1.01839 1.01899 1.21455 0.95289 0.96267 1.03069 1.22459 0.82530 0.96948 0.99530 1.87933 1.18252 1.29929 1.95369 1.21043 0.94482 0.82586 0.96451 0.94211 1.21023 0.96520 0.97377 0.98979 1.22012 1.00401 0.96018 0.99587 1.21034 0.96917 0.95616 0.81208 1.43649 1.00067 1.84194 1.03227 1.19170 0.91508 1.28067 1.00012 0.91801 1.25014 0.99007 0.96661 0.98681 1.70064 1.21542 1.27718 1.35629 0.86403 0.82048 0.78377 0.80130 1.21043 1.21678 1.20940 1.20565 0.86383 0.91540 0.98167 1.22025 1.00289 1.02210 0.96324 0.92693 0.92332 0.92605 0.91420 0.91308 0.93827 0.94073 0.90155 0.92870 0.93765 0.92503 0.95752 0.90652 0.93680 0.95095 0.93323 0.93507 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.39 6.30 -26.73 -0.17 -1.56 16 3 C 0.06 0.85 5.67 37.16 0.21 1.06 16 4 O -0.39 -6.84 9.82 -35.23 -0.35 -7.19 16 5 C 0.11 2.00 2.10 -29.79 -0.06 1.94 16 6 H 0.04 0.69 6.94 -51.93 -0.36 0.32 16 7 C -0.10 -1.94 5.15 -28.02 -0.14 -2.08 16 8 C -0.14 -2.73 5.71 -27.30 -0.16 -2.89 16 9 C 0.18 4.26 4.67 -2.94 -0.01 4.25 16 10 N -0.59 -14.75 2.27 -172.09 -0.39 -15.14 16 11 C -0.26 -7.08 9.44 -15.06 -0.14 -7.23 16 12 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 13 C 0.00 0.13 4.87 -17.43 -0.08 0.05 16 14 N -0.91 -26.26 11.01 55.49 0.61 -25.65 16 15 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.16 3.45 5.65 -4.09 -0.02 3.43 16 20 C -0.17 -3.19 5.23 -28.58 -0.15 -3.34 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.58 7.42 -51.93 -0.39 0.19 16 27 H 0.04 0.52 8.06 -51.93 -0.42 0.11 16 28 H 0.08 1.76 7.48 -51.93 -0.39 1.37 16 29 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.04 0.80 7.32 -51.93 -0.38 0.42 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.08 2.01 6.33 -51.93 -0.33 1.68 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.05 1.04 7.99 -51.93 -0.41 0.63 16 37 H 0.05 0.79 7.37 -51.93 -0.38 0.41 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -29.00 294.98 -7.90 -36.89 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.82 Total: -2.92 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.37 Total: -7.32 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.22 Total: -40.79 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.35 Total: -7.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.00 -7.90 -36.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609389893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.696 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds