Wall clock time and date at job start Sun Mar 29 2020 22:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 O 1.42897 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.42902 * 113.99687 * 180.02562 * 4 3 2 6 6 H 1.09004 * 108.44873 * 330.00044 * 5 4 3 7 7 C 1.52571 * 108.39066 * 212.38033 * 5 4 3 8 8 C 1.50874 * 109.36164 * 153.82225 * 7 5 4 9 9 C 1.53952 * 110.09422 * 91.88427 * 8 7 5 10 10 N 1.47604 * 112.14387 * 319.43633 * 9 8 7 11 11 C 1.36939 * 118.64367 * 137.84351 * 10 9 8 12 12 H 1.07992 * 119.99683 * 206.52985 * 11 10 9 13 13 C 1.38805 * 119.99716 * 26.52782 * 11 10 9 14 14 N 1.31621 * 120.00264 * 15.66820 * 13 11 10 15 15 Si 1.86800 * 119.99793 * 195.66153 * 13 11 10 16 16 H 1.48504 * 109.47321 * 60.00552 * 15 13 11 17 17 H 1.48504 * 109.47144 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47403 * 300.00507 * 15 13 11 19 19 C 1.44577 * 122.71059 * 317.86666 * 10 9 8 20 20 C 1.47089 * 108.51643 * 87.68991 * 5 4 3 21 21 H 1.09002 * 109.46914 * 60.00239 * 1 2 3 22 22 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47524 * 300.00392 * 1 2 3 24 24 H 1.08999 * 109.47220 * 240.00035 * 2 1 3 25 25 H 1.09002 * 109.46914 * 119.99761 * 2 1 3 26 26 H 1.09002 * 109.47223 * 59.99424 * 3 2 1 27 27 H 1.08996 * 109.47306 * 300.00041 * 3 2 1 28 28 H 1.08996 * 109.48785 * 273.79315 * 7 5 4 29 29 H 1.09004 * 109.48957 * 33.85677 * 7 5 4 30 30 H 1.09000 * 109.36968 * 331.69671 * 8 7 5 31 31 H 1.09000 * 109.26685 * 212.01093 * 8 7 5 32 32 H 1.09002 * 108.94673 * 198.75098 * 9 8 7 33 33 H 1.09001 * 108.94426 * 80.12113 * 9 8 7 34 34 H 0.97006 * 120.00132 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.45315 * 330.68836 * 19 10 9 36 36 H 1.08999 * 109.45052 * 210.76263 * 19 10 9 37 37 H 1.09000 * 109.32734 * 304.16474 * 20 5 4 38 38 H 1.09003 * 109.32848 * 63.80794 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0012 6 1 3.3726 3.4275 -0.5158 7 6 5.3633 2.6907 -0.7736 8 6 5.6687 4.0546 -1.3417 9 6 6.5406 4.8546 -0.3569 10 7 6.1143 4.6660 1.0436 11 6 7.0747 4.4994 2.0054 12 1 6.8452 3.9541 2.9088 13 6 8.3431 5.0314 1.8189 14 7 8.5449 5.9423 0.8904 15 14 9.7639 4.4548 2.8860 16 1 9.9577 2.9937 2.7050 17 1 11.0028 5.1716 2.4903 18 1 9.4606 4.7412 4.3112 19 6 4.7245 4.6493 1.4417 20 6 4.1882 3.1972 1.3950 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9564 -0.8899 28 1 6.1678 2.3872 -0.1037 29 1 5.2748 1.9697 -1.5863 30 1 4.7359 4.5907 -1.5163 31 1 6.2018 3.9399 -2.2855 32 1 6.4761 5.9136 -0.6069 33 1 7.5766 4.5312 -0.4581 34 1 9.4312 6.3143 0.7604 35 1 4.1444 5.2724 0.7611 36 1 4.6328 5.0376 2.4560 37 1 3.2156 3.1558 1.8854 38 1 4.8841 2.5413 1.9182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609389893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:20 Heat of formation + Delta-G solvation = -59.630385 kcal Electronic energy + Delta-G solvation = -16641.673560 eV Core-core repulsion = 14097.518585 eV Total energy + Delta-G solvation = -2544.154974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34021 -38.10070 -35.30835 -34.05416 -33.32982 -31.84416 -28.06557 -26.79753 -25.70479 -24.66074 -22.44724 -21.41758 -20.93482 -18.65719 -17.70428 -17.06549 -16.69217 -16.16390 -15.57500 -15.36358 -15.21289 -14.85067 -14.24158 -13.77623 -13.58994 -13.33286 -13.13570 -12.93378 -12.85566 -12.67014 -12.42760 -12.16580 -12.08123 -11.89322 -11.74187 -11.58307 -11.42619 -11.37770 -11.29018 -10.45216 -10.36820 -8.65245 -7.84811 -5.30762 1.45959 1.48445 1.54981 2.52302 2.75966 3.29084 3.67003 3.82897 4.05800 4.12943 4.18903 4.35689 4.43104 4.45170 4.46372 4.53216 4.65304 4.68866 4.83069 4.90203 4.94223 5.03291 5.10924 5.14566 5.17855 5.25372 5.29488 5.35271 5.40117 5.56020 5.59288 5.68300 5.80944 6.41376 6.43435 7.19824 7.96320 8.34514 9.20132 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043579 B = 0.006226 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.356789 B = 4496.070453 C = 4726.270110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.054 3.946 4 O -0.410 6.410 5 C 0.114 3.886 6 H 0.057 0.943 7 C -0.096 4.096 8 C -0.127 4.127 9 C 0.186 3.814 10 N -0.604 5.604 11 C -0.266 4.266 12 H 0.061 0.939 13 C -0.046 4.046 14 N -0.934 5.934 15 Si 0.961 3.039 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.276 1.276 19 C 0.158 3.842 20 C -0.152 4.152 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.075 0.925 32 H -0.002 1.002 33 H 0.040 0.960 34 H 0.249 0.751 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 -8.258 -3.642 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.023 4.023 4 O -0.331 6.331 5 C 0.057 3.943 6 H 0.075 0.925 7 C -0.134 4.134 8 C -0.166 4.166 9 C 0.061 3.939 10 N -0.327 5.327 11 C -0.397 4.397 12 H 0.078 0.922 13 C -0.241 4.241 14 N -0.580 5.580 15 Si 0.790 3.210 16 H -0.208 1.208 17 H -0.218 1.218 18 H -0.202 1.202 19 C 0.031 3.969 20 C -0.193 4.193 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.509 -8.315 -3.700 16.289 hybrid contribution 1.046 0.236 0.656 1.257 sum -12.462 -8.079 -3.044 15.161 Atomic orbital electron populations 1.21675 0.93135 1.02898 1.02465 1.21470 0.96996 0.94753 1.02666 1.22746 0.80514 0.98642 1.00357 1.87918 1.20573 1.29181 1.95419 1.20878 0.94333 0.83555 0.95544 0.92460 1.20934 0.96148 0.97347 0.98977 1.21848 1.00434 0.95568 0.98758 1.20817 0.96283 0.94740 0.82079 1.43852 1.01190 1.84381 1.03231 1.19432 0.92480 1.27384 1.00386 0.92151 1.25704 1.01156 0.97028 1.00221 1.70213 1.21573 1.28925 1.37244 0.85438 0.79029 0.77721 0.78842 1.20809 1.21847 1.20173 1.20710 0.84786 0.93340 0.98101 1.21821 1.00575 0.99615 0.97274 0.91945 0.91094 0.92218 0.91578 0.92035 0.93322 0.92806 0.93619 0.91091 0.91792 0.90679 0.98383 0.94118 0.94186 0.93523 0.93983 0.91013 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 71.98 0.71 -1.40 16 2 C -0.12 -2.45 6.30 30.60 0.19 -2.26 16 3 C 0.05 1.31 5.67 71.98 0.41 1.71 16 4 O -0.41 -13.29 9.82 -148.98 -1.46 -14.75 16 5 C 0.11 3.86 2.10 28.61 0.06 3.92 16 6 H 0.06 1.76 6.94 -2.39 -0.02 1.75 16 7 C -0.10 -3.55 5.15 29.76 0.15 -3.40 16 8 C -0.13 -4.74 5.71 30.22 0.17 -4.57 16 9 C 0.19 9.07 4.67 86.49 0.40 9.47 16 10 N -0.60 -30.52 2.27 -698.38 -1.59 -32.10 16 11 C -0.27 -14.89 9.44 84.03 0.79 -14.09 16 12 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 13 C -0.05 -2.59 4.87 84.86 0.41 -2.17 16 14 N -0.93 -55.55 11.01 21.65 0.24 -55.31 16 15 Si 0.96 45.75 29.58 68.60 2.03 47.78 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 17 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 C 0.16 6.59 5.65 87.38 0.49 7.08 16 20 C -0.15 -5.57 5.23 29.39 0.15 -5.42 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.13 7.42 -2.39 -0.02 1.12 16 27 H 0.05 1.18 8.06 -2.39 -0.02 1.16 16 28 H 0.04 2.00 7.48 -2.39 -0.02 1.98 16 29 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.06 2.15 7.32 -2.39 -0.02 2.13 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.00 -0.10 8.03 -2.39 -0.02 -0.12 16 33 H 0.04 2.24 6.33 -2.39 -0.02 2.22 16 34 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 35 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 36 H 0.04 1.78 7.99 -2.39 -0.02 1.77 16 37 H 0.07 2.25 7.37 -2.39 -0.02 2.23 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -62.64 294.98 4.17 -58.47 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.99 Total: 7.06 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 3.96 Total: -11.13 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -1.35 Total: -87.42 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.46 Total: -14.75 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -62.64 4.17 -58.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609389893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.163 kcal (2) G-P(sol) polarization free energy of solvation -62.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds