Wall clock time and date at job start Sun Mar 29 2020 22:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 O 1.42899 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00323 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.20571 * 31.93596 * 5 4 3 7 7 C 1.50123 * 110.25191 * 154.01601 * 5 4 3 8 8 C 1.54838 * 110.81921 * 216.65961 * 7 5 4 9 9 C 1.54402 * 110.06896 * 321.07735 * 8 7 5 10 10 N 1.43436 * 116.39009 * 318.65026 * 9 8 7 11 11 C 1.36941 * 120.53501 * 271.72952 * 10 9 8 12 12 H 1.08005 * 120.00116 * 30.32214 * 11 10 9 13 13 C 1.38809 * 120.00210 * 210.32336 * 11 10 9 14 14 N 1.31620 * 119.99609 * 25.33500 * 13 11 10 15 15 Si 1.86795 * 120.00027 * 205.34195 * 13 11 10 16 16 H 1.48496 * 109.47694 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47502 * 119.99904 * 15 13 11 18 18 H 1.48501 * 109.46940 * 239.99284 * 15 13 11 19 19 C 1.50164 * 118.92960 * 91.45623 * 10 9 8 20 20 C 1.46246 * 107.53132 * 289.84452 * 19 10 9 21 21 H 1.09000 * 109.46848 * 60.00029 * 1 2 3 22 22 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46709 * 299.99994 * 1 2 3 24 24 H 1.08997 * 109.47197 * 239.99416 * 2 1 3 25 25 H 1.09000 * 109.46848 * 119.99971 * 2 1 3 26 26 H 1.08991 * 109.47315 * 60.00004 * 3 2 1 27 27 H 1.09002 * 109.46688 * 299.99218 * 3 2 1 28 28 H 1.09002 * 109.20701 * 337.00523 * 7 5 4 29 29 H 1.09000 * 109.20864 * 96.31162 * 7 5 4 30 30 H 1.09006 * 109.36010 * 81.33955 * 8 7 5 31 31 H 1.08999 * 109.36479 * 201.06221 * 8 7 5 32 32 H 1.09005 * 107.88952 * 196.93036 * 9 8 7 33 33 H 1.08999 * 108.10418 * 80.53535 * 9 8 7 34 34 H 0.96997 * 120.00511 * 5.15903 * 14 13 11 35 35 H 1.08998 * 109.84421 * 49.34646 * 19 10 9 36 36 H 1.08993 * 109.84948 * 170.33477 * 19 10 9 37 37 H 1.08990 * 108.52088 * 179.64830 * 20 19 10 38 38 H 1.08995 * 108.51756 * 297.16591 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0504 2.7479 -0.0012 6 1 3.4107 3.4451 0.5399 7 6 5.4186 2.7077 0.6153 8 6 5.6876 3.9892 1.4417 9 6 5.0993 5.2197 0.7179 10 7 5.2787 5.2689 -0.7044 11 6 6.4018 5.8360 -1.2448 12 1 7.3359 5.8060 -0.7034 13 6 6.3399 6.4496 -2.4883 14 7 5.1975 6.9345 -2.9267 15 14 7.8778 6.5870 -3.5397 16 1 9.0231 5.9688 -2.8248 17 1 7.6605 5.8831 -4.8291 18 1 8.1724 8.0188 -3.8010 19 6 4.2178 4.6828 -1.5910 20 6 4.2645 3.2297 -1.4324 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9562 -0.8901 28 1 5.4924 1.8379 1.2680 29 1 6.1655 2.6268 -0.1745 30 1 5.2245 3.8900 2.4234 31 1 6.7627 4.1230 1.5613 32 1 5.5550 6.1112 1.1488 33 1 4.0302 5.2565 0.9269 34 1 4.4163 6.9306 -2.3517 35 1 3.2383 5.0563 -1.2925 36 1 4.4153 4.9483 -2.6295 37 1 3.4953 2.7875 -2.0654 38 1 5.2363 2.8751 -1.7754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609389894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:22 Heat of formation + Delta-G solvation = -41.919085 kcal Electronic energy + Delta-G solvation = -16747.353638 eV Core-core repulsion = 14203.966683 eV Total energy + Delta-G solvation = -2543.386955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.97821 -36.68708 -34.02590 -32.84531 -31.41137 -30.34838 -26.55382 -25.40530 -23.73457 -23.20011 -21.50304 -20.09431 -19.15078 -17.20974 -16.44443 -15.72859 -15.07000 -14.39801 -14.15075 -13.97831 -13.62279 -13.49846 -12.98911 -12.66508 -12.26589 -12.20062 -11.75142 -11.58636 -11.16589 -11.07812 -11.00231 -10.71325 -10.52164 -10.31839 -10.18052 -10.04633 -9.87208 -9.73490 -9.23065 -9.03535 -8.32297 -6.83659 -6.07084 -3.24948 3.52248 3.54556 3.68487 3.91291 4.60558 4.93025 5.00397 5.10217 5.25253 5.35665 5.46178 5.49882 5.54746 5.58521 5.67669 5.76298 5.87880 5.93196 5.95797 6.05399 6.11002 6.14607 6.32538 6.36116 6.55517 6.62187 6.71824 6.78296 6.84847 6.94596 7.16136 7.20731 7.65655 8.09159 8.57752 9.15760 9.84606 10.33141 11.21196 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037535 B = 0.006699 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.798819 B = 4178.725857 C = 4488.823743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.062 3.938 4 O -0.388 6.388 5 C 0.097 3.903 6 H 0.061 0.939 7 C -0.104 4.104 8 C -0.141 4.141 9 C 0.156 3.844 10 N -0.592 5.592 11 C -0.346 4.346 12 H 0.054 0.946 13 C -0.023 4.023 14 N -0.914 5.914 15 Si 1.066 2.934 16 H -0.292 1.292 17 H -0.290 1.290 18 H -0.294 1.294 19 C 0.134 3.866 20 C -0.150 4.150 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.023 0.977 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -10.258 6.083 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.015 4.015 4 O -0.308 6.308 5 C 0.040 3.960 6 H 0.079 0.921 7 C -0.142 4.142 8 C -0.182 4.182 9 C 0.027 3.973 10 N -0.314 5.314 11 C -0.475 4.475 12 H 0.072 0.928 13 C -0.225 4.225 14 N -0.554 5.554 15 Si 0.896 3.104 16 H -0.218 1.218 17 H -0.217 1.217 18 H -0.221 1.221 19 C 0.010 3.990 20 C -0.189 4.189 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.556 -9.888 4.585 12.234 hybrid contribution -0.646 -0.336 1.529 1.694 sum -6.202 -10.224 6.114 13.431 Atomic orbital electron populations 1.21697 0.95098 1.01866 1.02022 1.21451 0.95418 0.96123 1.03011 1.22473 0.82129 0.97046 0.99864 1.87869 1.18663 1.29115 1.95141 1.21422 0.94858 0.82948 0.96723 0.92106 1.21459 0.95353 0.97485 0.99857 1.22769 1.01168 0.96770 0.97487 1.20235 0.96518 0.94631 0.85935 1.44017 1.21913 1.66304 0.99186 1.19937 0.87873 1.33799 1.05905 0.92800 1.25802 1.03398 0.94951 0.98345 1.70721 1.02682 1.40698 1.41317 0.83520 0.74775 0.76096 0.75989 1.21814 1.21690 1.22120 1.20401 0.90512 0.89575 0.98546 1.21471 1.01907 0.99721 0.95800 0.92510 0.92296 0.92646 0.91304 0.91447 0.93895 0.93567 0.92886 0.91094 0.93128 0.92480 0.94278 0.96011 0.91985 0.95910 0.88990 0.93748 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.39 6.30 -26.73 -0.17 -1.56 16 3 C 0.06 0.86 5.72 37.16 0.21 1.07 16 4 O -0.39 -6.69 9.89 -35.23 -0.35 -7.04 16 5 C 0.10 1.79 2.34 -28.41 -0.07 1.72 16 6 H 0.06 1.12 6.01 -51.93 -0.31 0.81 16 7 C -0.10 -1.92 5.42 -27.19 -0.15 -2.07 16 8 C -0.14 -2.59 6.40 -25.03 -0.16 -2.75 16 9 C 0.16 3.34 5.13 -4.93 -0.03 3.32 16 10 N -0.59 -14.76 2.40 -175.40 -0.42 -15.18 16 11 C -0.35 -9.64 9.47 -15.06 -0.14 -9.78 16 12 H 0.05 1.53 7.95 -52.48 -0.42 1.11 16 13 C -0.02 -0.65 4.77 -17.43 -0.08 -0.74 16 14 N -0.91 -27.21 12.23 55.49 0.68 -26.53 16 15 Si 1.07 25.43 29.99 -169.99 -5.10 20.34 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 C 0.13 3.12 4.67 -5.20 -0.02 3.10 16 20 C -0.15 -3.06 4.93 -30.19 -0.15 -3.20 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 28 H 0.05 0.91 7.98 -51.93 -0.41 0.49 16 29 H 0.07 1.45 6.83 -51.93 -0.35 1.09 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.87 8.00 -51.93 -0.42 0.45 16 33 H 0.02 0.44 6.90 -51.93 -0.36 0.08 16 34 H 0.27 8.06 6.97 -40.82 -0.28 7.78 16 35 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.09 2.42 5.79 -51.93 -0.30 2.12 16 37 H 0.04 0.84 7.68 -51.93 -0.40 0.45 16 38 H 0.07 1.46 6.93 -51.93 -0.36 1.10 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -29.53 292.98 -7.78 -37.31 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.62 Total: -1.43 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.39 Total: -11.88 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.26 Total: -41.71 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.35 Total: -7.04 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.53 -7.78 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609389894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.607 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds