Wall clock time and date at job start Sun Mar 29 2020 22:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 O 1.42899 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00323 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.20571 * 31.93596 * 5 4 3 7 7 C 1.50123 * 110.25191 * 154.01601 * 5 4 3 8 8 C 1.54838 * 110.81921 * 216.65961 * 7 5 4 9 9 C 1.54402 * 110.06896 * 321.07735 * 8 7 5 10 10 N 1.43436 * 116.39009 * 318.65026 * 9 8 7 11 11 C 1.36941 * 120.53501 * 271.72952 * 10 9 8 12 12 H 1.08005 * 120.00116 * 30.32214 * 11 10 9 13 13 C 1.38809 * 120.00210 * 210.32336 * 11 10 9 14 14 N 1.31620 * 119.99609 * 25.33500 * 13 11 10 15 15 Si 1.86795 * 120.00027 * 205.34195 * 13 11 10 16 16 H 1.48496 * 109.47694 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47502 * 119.99904 * 15 13 11 18 18 H 1.48501 * 109.46940 * 239.99284 * 15 13 11 19 19 C 1.50164 * 118.92960 * 91.45623 * 10 9 8 20 20 C 1.46246 * 107.53132 * 289.84452 * 19 10 9 21 21 H 1.09000 * 109.46848 * 60.00029 * 1 2 3 22 22 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46709 * 299.99994 * 1 2 3 24 24 H 1.08997 * 109.47197 * 239.99416 * 2 1 3 25 25 H 1.09000 * 109.46848 * 119.99971 * 2 1 3 26 26 H 1.08991 * 109.47315 * 60.00004 * 3 2 1 27 27 H 1.09002 * 109.46688 * 299.99218 * 3 2 1 28 28 H 1.09002 * 109.20701 * 337.00523 * 7 5 4 29 29 H 1.09000 * 109.20864 * 96.31162 * 7 5 4 30 30 H 1.09006 * 109.36010 * 81.33955 * 8 7 5 31 31 H 1.08999 * 109.36479 * 201.06221 * 8 7 5 32 32 H 1.09005 * 107.88952 * 196.93036 * 9 8 7 33 33 H 1.08999 * 108.10418 * 80.53535 * 9 8 7 34 34 H 0.96997 * 120.00511 * 5.15903 * 14 13 11 35 35 H 1.08998 * 109.84421 * 49.34646 * 19 10 9 36 36 H 1.08993 * 109.84948 * 170.33477 * 19 10 9 37 37 H 1.08990 * 108.52088 * 179.64830 * 20 19 10 38 38 H 1.08995 * 108.51756 * 297.16591 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0504 2.7479 -0.0012 6 1 3.4107 3.4451 0.5399 7 6 5.4186 2.7077 0.6153 8 6 5.6876 3.9892 1.4417 9 6 5.0993 5.2197 0.7179 10 7 5.2787 5.2689 -0.7044 11 6 6.4018 5.8360 -1.2448 12 1 7.3359 5.8060 -0.7034 13 6 6.3399 6.4496 -2.4883 14 7 5.1975 6.9345 -2.9267 15 14 7.8778 6.5870 -3.5397 16 1 9.0231 5.9688 -2.8248 17 1 7.6605 5.8831 -4.8291 18 1 8.1724 8.0188 -3.8010 19 6 4.2178 4.6828 -1.5910 20 6 4.2645 3.2297 -1.4324 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9562 -0.8901 28 1 5.4924 1.8379 1.2680 29 1 6.1655 2.6268 -0.1745 30 1 5.2245 3.8900 2.4234 31 1 6.7627 4.1230 1.5613 32 1 5.5550 6.1112 1.1488 33 1 4.0302 5.2565 0.9269 34 1 4.4163 6.9306 -2.3517 35 1 3.2383 5.0563 -1.2925 36 1 4.4153 4.9483 -2.6295 37 1 3.4953 2.7875 -2.0654 38 1 5.2363 2.8751 -1.7754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609389894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:22 Heat of formation + Delta-G solvation = -58.455639 kcal Electronic energy + Delta-G solvation = -16748.070716 eV Core-core repulsion = 14203.966683 eV Total energy + Delta-G solvation = -2544.104033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51385 -38.22372 -35.48037 -34.26143 -33.09536 -32.19443 -28.07252 -26.80349 -25.35984 -25.04742 -22.47855 -21.82389 -20.80762 -19.16950 -17.87072 -16.89161 -16.68601 -16.06923 -15.66864 -15.50087 -15.46025 -15.09737 -14.29427 -14.02448 -13.71835 -13.55417 -13.24925 -13.00548 -12.67032 -12.61308 -12.32862 -12.25634 -11.92083 -11.89242 -11.79069 -11.68776 -11.52714 -11.35387 -11.11859 -10.54447 -10.32754 -8.89437 -8.25603 -5.42271 1.57916 1.64853 1.81464 2.64332 2.66544 3.14895 3.47930 3.73632 3.95632 4.04225 4.09577 4.21241 4.31077 4.32977 4.41887 4.46255 4.54764 4.60080 4.64910 4.75854 4.86015 4.93885 5.00660 5.10518 5.12599 5.14096 5.20721 5.23877 5.30370 5.37084 5.42329 5.43728 5.90457 6.33010 6.39382 7.09505 7.75873 8.25817 8.99494 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037535 B = 0.006699 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.798819 B = 4178.725857 C = 4488.823743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.053 3.947 4 O -0.397 6.397 5 C 0.110 3.890 6 H 0.066 0.934 7 C -0.100 4.100 8 C -0.129 4.129 9 C 0.149 3.851 10 N -0.608 5.608 11 C -0.350 4.350 12 H 0.044 0.956 13 C -0.071 4.071 14 N -0.938 5.938 15 Si 1.113 2.887 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.290 1.290 19 C 0.143 3.857 20 C -0.141 4.141 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.256 0.744 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -11.545 7.143 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.024 4.024 4 O -0.317 6.317 5 C 0.053 3.947 6 H 0.084 0.916 7 C -0.138 4.138 8 C -0.170 4.170 9 C 0.021 3.979 10 N -0.332 5.332 11 C -0.480 4.480 12 H 0.062 0.938 13 C -0.268 4.268 14 N -0.580 5.580 15 Si 0.938 3.062 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.216 1.216 19 C 0.019 3.981 20 C -0.180 4.180 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.971 -11.196 5.680 13.902 hybrid contribution -0.589 0.044 1.256 1.388 sum -6.560 -11.152 6.935 14.680 Atomic orbital electron populations 1.21686 0.93247 1.03016 1.02364 1.21459 0.96921 0.94272 1.02966 1.22757 0.80360 0.98998 1.00246 1.87866 1.20683 1.28078 1.95067 1.21178 0.95071 0.83703 0.94796 0.91649 1.21389 0.94724 0.98248 0.99444 1.22636 1.00946 0.94899 0.98476 1.20412 0.97496 0.95711 0.84240 1.44188 1.21511 1.66689 1.00766 1.20103 0.88528 1.33223 1.06121 0.93777 1.27051 1.05180 0.94790 0.99790 1.70837 1.03001 1.42913 1.41245 0.82884 0.72259 0.76309 0.74730 1.20165 1.21422 1.21641 1.20247 0.90187 0.91293 0.96416 1.21311 1.01121 0.97610 0.97955 0.92523 0.90784 0.91976 0.91799 0.91077 0.92767 0.93904 0.90933 0.93580 0.89762 0.92957 0.95643 0.94689 0.93413 0.95360 0.92380 0.92605 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -2.43 6.30 30.60 0.19 -2.23 16 3 C 0.05 1.36 5.72 71.98 0.41 1.77 16 4 O -0.40 -12.85 9.89 -148.98 -1.47 -14.33 16 5 C 0.11 3.85 2.34 29.51 0.07 3.92 16 6 H 0.07 2.25 6.01 -2.39 -0.01 2.23 16 7 C -0.10 -3.53 5.42 30.29 0.16 -3.37 16 8 C -0.13 -4.48 6.40 31.70 0.20 -4.27 16 9 C 0.15 6.27 5.13 87.42 0.45 6.72 16 10 N -0.61 -30.54 2.40 -708.86 -1.70 -32.23 16 11 C -0.35 -19.73 9.47 84.03 0.80 -18.94 16 12 H 0.04 2.53 7.95 -2.91 -0.02 2.51 16 13 C -0.07 -4.08 4.77 84.86 0.40 -3.67 16 14 N -0.94 -56.98 12.23 21.65 0.26 -56.72 16 15 Si 1.11 51.67 29.99 68.60 2.06 53.73 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 C 0.14 6.73 4.67 83.58 0.39 7.12 16 20 C -0.14 -5.71 4.93 28.36 0.14 -5.57 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 27 H 0.04 1.13 7.85 -2.39 -0.02 1.11 16 28 H 0.07 2.28 7.98 -2.39 -0.02 2.26 16 29 H 0.05 1.85 6.83 -2.39 -0.02 1.83 16 30 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.03 1.12 8.00 -2.38 -0.02 1.10 16 33 H 0.03 1.37 6.90 -2.39 -0.02 1.35 16 34 H 0.26 15.77 6.97 -92.71 -0.65 15.12 16 35 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 36 H 0.06 3.15 5.79 -2.39 -0.01 3.13 16 37 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 38 H 0.05 2.05 6.93 -2.39 -0.02 2.03 16 Total: -1.00 -63.18 292.98 4.21 -58.97 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.12 Total: 10.67 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.93 Total: -20.09 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -1.43 Total: -88.95 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.47 Total: -14.33 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.06 Total: 53.73 kcal Total: -63.18 4.21 -58.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609389894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.518 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds