Wall clock time and date at job start Sun Mar 29 2020 21:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 H 1.08999 * 109.50555 * 304.90860 * 3 2 1 5 5 C 1.53096 * 109.54259 * 184.80422 * 3 2 1 6 6 N 1.47019 * 109.25805 * 183.19722 * 5 3 2 7 7 C 1.46896 * 110.99766 * 182.39243 * 6 5 3 8 8 C 1.52996 * 109.47256 * 302.40523 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.47011 * 110.75519 * 58.61287 * 6 5 3 18 18 C 1.53093 * 109.25893 * 301.38566 * 17 6 5 19 19 H 1.08994 * 109.51051 * 176.77963 * 18 17 6 20 20 C 1.52998 * 109.51002 * 296.87118 * 18 17 6 21 21 O 1.43016 * 109.50546 * 64.99920 * 3 2 1 22 22 H 1.09003 * 109.47198 * 60.00142 * 1 2 3 23 23 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47469 * 300.00217 * 1 2 3 25 25 H 1.08998 * 109.47596 * 240.00255 * 2 1 3 26 26 H 1.09003 * 109.47198 * 119.99858 * 2 1 3 27 27 H 1.08996 * 109.50902 * 63.25799 * 5 3 2 28 28 H 1.09010 * 109.50768 * 303.12755 * 5 3 2 29 29 H 1.09004 * 109.46774 * 182.40722 * 7 6 5 30 30 H 1.09000 * 109.47723 * 62.41111 * 7 6 5 31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.50469 * 61.31731 * 17 6 5 35 35 H 1.08997 * 109.50732 * 181.45372 * 17 6 5 36 36 H 1.09009 * 109.47213 * 59.99617 * 20 18 17 37 37 H 1.09000 * 109.47482 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.46959 * 300.00065 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9816 -0.8426 5 6 3.5661 1.4461 -0.1208 6 7 4.0554 2.8303 -0.0431 7 6 5.5137 2.8834 -0.2121 8 6 6.1827 2.0146 0.8550 9 6 7.6787 2.0695 0.6820 10 1 8.1094 2.6649 -0.1095 11 6 8.4980 1.3646 1.5382 12 7 7.9736 0.6399 2.5023 13 14 10.3527 1.4389 1.3286 14 1 10.8109 2.8444 1.4697 15 1 11.0022 0.5995 2.3673 16 1 10.7195 0.9314 -0.0179 17 6 3.6486 3.4564 1.2232 18 6 2.1216 3.4327 1.3306 19 1 1.8179 3.8440 2.2931 20 6 1.5170 4.2715 0.2029 21 8 1.6620 2.0826 1.2218 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8566 1.0105 -1.0768 28 1 3.9970 0.8616 0.6922 29 1 5.8542 3.9136 -0.1077 30 1 5.7787 2.5116 -1.2019 31 1 5.8421 0.9844 0.7506 32 1 5.9178 2.3863 1.8447 33 1 8.5500 0.1437 3.1044 34 1 4.0807 2.9040 2.0576 35 1 3.9991 4.4881 1.2483 36 1 1.8198 3.8587 -0.7595 37 1 0.4298 4.2538 0.2796 38 1 1.8707 5.2992 0.2848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609540864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:20 Heat of formation + Delta-G solvation = -61.013745 kcal Electronic energy + Delta-G solvation = -16694.224266 eV Core-core repulsion = 14150.009305 eV Total energy + Delta-G solvation = -2544.214961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70252 -35.93093 -34.12939 -32.86841 -31.00392 -29.57619 -27.83074 -25.75430 -24.00552 -23.07770 -21.65900 -20.36059 -18.75641 -16.53572 -16.30915 -15.81235 -14.81919 -14.63640 -14.24742 -14.11865 -13.58914 -13.44076 -13.17852 -12.54976 -12.39950 -11.95307 -11.85327 -11.69351 -11.31594 -11.23357 -10.99064 -10.91005 -10.88136 -10.71868 -10.49511 -10.08043 -9.78842 -9.72642 -9.17610 -9.15339 -8.37068 -7.53413 -6.03285 -4.06670 3.30941 3.35470 3.37818 3.99857 4.39680 4.49775 5.03713 5.12221 5.25392 5.31742 5.34506 5.38549 5.47051 5.54934 5.71535 5.80390 5.82443 5.95205 6.02469 6.08417 6.16934 6.23829 6.28950 6.35200 6.39440 6.42805 6.55741 6.64993 6.88057 7.44558 7.47539 7.54560 7.65280 7.80319 7.96888 8.38943 9.00158 9.57582 11.07720 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037253 B = 0.006319 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.429172 B = 4429.996237 C = 4802.753582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.062 0.938 5 C 0.020 3.980 6 N -0.537 5.537 7 C 0.056 3.944 8 C -0.009 4.009 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.021 3.979 18 C 0.090 3.910 19 H 0.098 0.902 20 C -0.172 4.172 21 O -0.378 6.378 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 2.709 -4.431 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.035 3.965 4 H 0.080 0.920 5 C -0.108 4.108 6 N -0.261 5.261 7 C -0.071 4.071 8 C -0.047 4.047 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.108 4.108 18 C 0.032 3.968 19 H 0.115 0.885 20 C -0.229 4.229 21 O -0.297 6.297 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.540 2.777 -4.536 14.547 hybrid contribution 1.773 -0.317 0.486 1.866 sum -11.767 2.460 -4.049 12.685 Atomic orbital electron populations 1.21683 0.95489 1.01098 1.02023 1.21526 0.96331 0.94805 1.02857 1.22191 0.93628 0.93254 0.87459 0.91969 1.22764 0.94568 0.91100 1.02385 1.62621 1.14538 1.16330 1.32592 1.22336 0.83789 1.00622 1.00312 1.19654 0.95686 0.95263 0.94088 1.21118 0.91464 1.28885 1.14533 0.92661 1.25029 0.98849 0.95298 0.95184 1.69961 1.35301 1.30426 1.17677 0.86643 0.85434 0.78043 0.77792 1.20212 1.21279 1.20203 1.22724 0.95013 1.00370 0.92669 1.22236 0.93009 0.82602 0.98929 0.88461 1.22258 0.99958 1.00159 1.00548 1.87978 1.76721 1.25895 1.39100 0.93157 0.93069 0.92077 0.90703 0.91085 0.90480 0.92680 0.91985 0.91887 0.96291 0.96537 0.92920 0.93031 0.90396 0.91048 0.93017 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.15 0.36 -1.27 16 2 C -0.12 -1.53 5.65 -26.73 -0.15 -1.68 16 3 C 0.09 1.39 2.40 -26.68 -0.06 1.33 16 4 H 0.06 0.89 6.49 -51.93 -0.34 0.56 16 5 C 0.02 0.36 4.41 -3.71 -0.02 0.34 16 6 N -0.54 -9.85 4.31 -234.31 -1.01 -10.86 16 7 C 0.06 1.19 5.32 -3.83 -0.02 1.17 16 8 C -0.01 -0.23 4.26 -27.88 -0.12 -0.35 16 9 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 C 0.02 0.36 4.74 -3.72 -0.02 0.34 16 18 C 0.09 1.33 3.92 -26.68 -0.10 1.23 16 19 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 20 C -0.17 -2.19 8.89 37.16 0.33 -1.86 16 21 O -0.38 -6.12 9.82 -35.23 -0.35 -6.46 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.05 1.14 6.41 -51.92 -0.33 0.80 16 29 H 0.06 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.52 6.42 -51.93 -0.33 0.19 16 32 H 0.02 0.46 6.61 -51.93 -0.34 0.11 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 35 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 36 H 0.07 0.99 6.13 -51.92 -0.32 0.67 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -30.06 294.27 -8.02 -38.08 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.60 Total: -1.27 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.21 Total: -14.27 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.27 Total: -37.22 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.35 Total: -6.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.06 -8.02 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609540864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.934 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds