Wall clock time and date at job start Sun Mar 29 2020 21:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 H 1.08999 * 109.50555 * 304.90860 * 3 2 1 5 5 C 1.53096 * 109.54259 * 184.80422 * 3 2 1 6 6 N 1.47019 * 109.25805 * 183.19722 * 5 3 2 7 7 C 1.46896 * 110.99766 * 182.39243 * 6 5 3 8 8 C 1.52996 * 109.47256 * 302.40523 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.47011 * 110.75519 * 58.61287 * 6 5 3 18 18 C 1.53093 * 109.25893 * 301.38566 * 17 6 5 19 19 H 1.08994 * 109.51051 * 176.77963 * 18 17 6 20 20 C 1.52998 * 109.51002 * 296.87118 * 18 17 6 21 21 O 1.43016 * 109.50546 * 64.99920 * 3 2 1 22 22 H 1.09003 * 109.47198 * 60.00142 * 1 2 3 23 23 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47469 * 300.00217 * 1 2 3 25 25 H 1.08998 * 109.47596 * 240.00255 * 2 1 3 26 26 H 1.09003 * 109.47198 * 119.99858 * 2 1 3 27 27 H 1.08996 * 109.50902 * 63.25799 * 5 3 2 28 28 H 1.09010 * 109.50768 * 303.12755 * 5 3 2 29 29 H 1.09004 * 109.46774 * 182.40722 * 7 6 5 30 30 H 1.09000 * 109.47723 * 62.41111 * 7 6 5 31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.50469 * 61.31731 * 17 6 5 35 35 H 1.08997 * 109.50732 * 181.45372 * 17 6 5 36 36 H 1.09009 * 109.47213 * 59.99617 * 20 18 17 37 37 H 1.09000 * 109.47482 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.46959 * 300.00065 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9816 -0.8426 5 6 3.5661 1.4461 -0.1208 6 7 4.0554 2.8303 -0.0431 7 6 5.5137 2.8834 -0.2121 8 6 6.1827 2.0146 0.8550 9 6 7.6787 2.0695 0.6820 10 1 8.1094 2.6649 -0.1095 11 6 8.4980 1.3646 1.5382 12 7 7.9736 0.6399 2.5023 13 14 10.3527 1.4389 1.3286 14 1 10.8109 2.8444 1.4697 15 1 11.0022 0.5995 2.3673 16 1 10.7195 0.9314 -0.0179 17 6 3.6486 3.4564 1.2232 18 6 2.1216 3.4327 1.3306 19 1 1.8179 3.8440 2.2931 20 6 1.5170 4.2715 0.2029 21 8 1.6620 2.0826 1.2218 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8566 1.0105 -1.0768 28 1 3.9970 0.8616 0.6922 29 1 5.8542 3.9136 -0.1077 30 1 5.7787 2.5116 -1.2019 31 1 5.8421 0.9844 0.7506 32 1 5.9178 2.3863 1.8447 33 1 8.5500 0.1437 3.1044 34 1 4.0807 2.9040 2.0576 35 1 3.9991 4.4881 1.2483 36 1 1.8198 3.8587 -0.7595 37 1 0.4298 4.2538 0.2796 38 1 1.8707 5.2992 0.2848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609540864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:19 Heat of formation + Delta-G solvation = -80.522149 kcal Electronic energy + Delta-G solvation = -16695.070214 eV Core-core repulsion = 14150.009305 eV Total energy + Delta-G solvation = -2545.060909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04836 -37.49909 -35.27542 -34.95159 -32.29793 -31.30054 -29.20415 -27.36640 -25.56100 -24.63900 -23.04404 -21.81911 -20.17435 -18.63780 -17.56819 -17.21083 -16.62728 -16.23341 -15.72410 -15.47834 -14.82530 -14.78794 -14.63355 -14.25328 -14.09353 -13.27808 -13.16828 -12.97257 -12.81518 -12.77529 -12.63501 -12.57987 -12.12484 -11.98421 -11.90271 -11.76803 -11.55468 -11.40735 -11.03776 -10.58754 -10.47849 -9.19861 -8.24396 -6.37508 1.37076 1.40372 1.48434 2.36950 2.79396 2.99619 3.08050 3.81256 3.91665 4.05679 4.15333 4.20832 4.32750 4.40703 4.46558 4.47698 4.60824 4.66368 4.76884 4.83481 4.88488 4.94215 5.02556 5.06170 5.12051 5.12592 5.28470 5.41656 5.42614 5.48945 5.50640 5.68501 5.93418 6.08990 6.25934 6.31649 6.79970 7.32389 8.86653 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037253 B = 0.006319 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.429172 B = 4429.996237 C = 4802.753582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.098 3.902 4 H 0.080 0.920 5 C 0.021 3.979 6 N -0.524 5.524 7 C 0.069 3.931 8 C 0.002 3.998 9 C -0.544 4.544 10 H 0.064 0.936 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.020 3.980 18 C 0.089 3.911 19 H 0.115 0.885 20 C -0.162 4.162 21 O -0.392 6.392 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.069 0.931 31 H -0.009 1.009 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.012 0.988 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.768 3.627 -5.809 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.041 3.959 4 H 0.097 0.903 5 C -0.108 4.108 6 N -0.247 5.247 7 C -0.058 4.058 8 C -0.036 4.036 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.109 4.109 18 C 0.032 3.968 19 H 0.132 0.868 20 C -0.219 4.219 21 O -0.311 6.311 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.009 0.991 32 H 0.004 0.996 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.061 3.706 -5.925 15.702 hybrid contribution 1.910 -0.615 0.950 2.220 sum -12.152 3.091 -4.975 13.490 Atomic orbital electron populations 1.21630 0.93605 1.02210 1.02168 1.21575 0.97932 0.93362 1.02717 1.22252 0.91275 0.94705 0.87689 0.90256 1.22830 0.96760 0.90049 1.01157 1.62678 1.12386 1.16680 1.32923 1.22118 0.85299 0.99733 0.98669 1.19498 0.95424 0.94478 0.94179 1.21592 0.92764 1.29011 1.14837 0.91776 1.26028 1.04484 0.94673 0.94648 1.70116 1.37345 1.31353 1.18688 0.85456 0.78620 0.78557 0.78157 1.18993 1.20956 1.18958 1.22813 0.97280 1.00162 0.90614 1.22386 0.90780 0.82642 1.01032 0.86760 1.22170 1.00856 1.00205 0.98679 1.87976 1.76551 1.26758 1.39839 0.91769 0.91546 0.93086 0.89214 0.92955 0.89725 0.96696 0.91339 0.91299 0.99104 0.99609 0.92807 0.96967 0.89178 0.91999 0.91293 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.81 71.98 0.71 -2.13 16 2 C -0.12 -2.98 5.65 30.59 0.17 -2.80 16 3 C 0.10 2.88 2.40 30.63 0.07 2.96 16 4 H 0.08 2.10 6.49 -2.39 -0.02 2.08 16 5 C 0.02 0.74 4.41 86.31 0.38 1.13 16 6 N -0.52 -19.26 4.31 -895.23 -3.86 -23.12 16 7 C 0.07 2.96 5.32 86.30 0.46 3.42 16 8 C 0.00 0.13 4.26 29.85 0.13 0.26 16 9 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 10 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 12 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 13 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 17 C 0.02 0.70 4.74 86.31 0.41 1.11 16 18 C 0.09 2.54 3.92 30.62 0.12 2.66 16 19 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 20 C -0.16 -3.69 8.89 71.98 0.64 -3.05 16 21 O -0.39 -12.44 9.82 -148.98 -1.46 -13.91 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.14 7.82 -2.39 -0.02 1.13 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.01 0.65 6.41 -2.38 -0.02 0.64 16 29 H 0.07 2.83 8.11 -2.38 -0.02 2.81 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H -0.01 -0.55 6.42 -2.38 -0.02 -0.57 16 32 H -0.01 -0.86 6.61 -2.39 -0.02 -0.87 16 33 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 34 H 0.01 0.52 6.59 -2.39 -0.02 0.50 16 35 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 36 H 0.06 1.54 6.13 -2.38 -0.01 1.53 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -65.98 294.27 1.78 -64.20 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.00 Total: 11.22 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 3.78 Total: -27.11 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -3.57 Total: -81.08 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.46 Total: -13.91 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.98 1.78 -64.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609540864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.320 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds