Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47109 * 2 1 4 4 H 1.09004 * 109.50347 * 54.91700 * 3 2 1 5 5 C 1.53100 * 109.50478 * 175.00082 * 3 2 1 6 6 N 1.47020 * 109.25460 * 176.78606 * 5 3 2 7 7 C 1.46898 * 110.99771 * 177.60927 * 6 5 3 8 8 C 1.53006 * 109.47006 * 169.99609 * 7 6 5 9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48510 * 109.46866 * 90.00390 * 13 11 9 15 15 H 1.48502 * 109.47245 * 210.00175 * 13 11 9 16 16 H 1.48494 * 109.47271 * 330.00312 * 13 11 9 17 17 C 1.47020 * 110.74983 * 301.38404 * 6 5 3 18 18 C 1.53092 * 109.25811 * 58.61896 * 17 6 5 19 19 H 1.09007 * 109.54316 * 183.19694 * 18 17 6 20 20 C 1.52995 * 109.50803 * 63.08510 * 18 17 6 21 21 O 1.43009 * 109.50624 * 294.78524 * 3 2 1 22 22 H 1.09000 * 109.47317 * 59.99885 * 1 2 3 23 23 H 1.08994 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46725 * 299.99601 * 1 2 3 25 25 H 1.09005 * 109.47188 * 240.00165 * 2 1 3 26 26 H 1.09000 * 109.47317 * 120.00115 * 2 1 3 27 27 H 1.09000 * 109.50526 * 56.85241 * 5 3 2 28 28 H 1.08990 * 109.50974 * 296.71614 * 5 3 2 29 29 H 1.09001 * 109.47062 * 49.99863 * 7 6 5 30 30 H 1.08993 * 109.47084 * 289.99310 * 7 6 5 31 31 H 1.09001 * 109.46801 * 300.00064 * 8 7 6 32 32 H 1.09001 * 109.46998 * 59.99660 * 8 7 6 33 33 H 0.96997 * 119.99752 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.50618 * 178.55233 * 17 6 5 35 35 H 1.09003 * 109.50594 * 298.67788 * 17 6 5 36 36 H 1.09005 * 109.47138 * 300.21479 * 20 18 17 37 37 H 1.08999 * 109.47490 * 60.21667 * 20 18 17 38 38 H 1.09005 * 109.47227 * 180.21744 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9825 0.8408 5 6 3.5658 1.4453 0.1258 6 7 4.0562 2.8291 0.0477 7 6 5.5140 2.8815 0.2212 8 6 6.0169 4.2878 -0.1112 9 6 7.5123 4.3417 0.0674 10 1 8.0503 3.4610 0.3857 11 6 8.1938 5.5152 -0.1766 12 7 7.5388 6.5875 -0.5647 13 14 10.0475 5.5818 0.0440 14 1 10.7115 5.2212 -1.2345 15 1 10.4498 6.9553 0.4405 16 1 10.4550 4.6221 1.1013 17 6 3.6538 3.4536 -1.2209 18 6 2.1272 3.4307 -1.3331 19 1 1.8262 3.8411 -2.2971 20 6 1.5195 4.2707 -0.2080 21 8 1.6664 2.0811 -1.2238 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9988 0.8594 -0.6850 28 1 3.8529 1.0109 1.0833 29 1 5.9854 2.1599 -0.4459 30 1 5.7659 2.6403 1.2539 31 1 5.7650 4.5290 -1.1439 32 1 5.5454 5.0094 0.5559 33 1 8.0182 7.4132 -0.7360 34 1 4.0052 4.4851 -1.2464 35 1 4.0884 2.8998 -2.0532 36 1 1.8221 3.8606 0.7556 37 1 1.8710 5.2990 -0.2918 38 1 0.4325 4.2508 -0.2861 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609540866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = -59.692208 kcal Electronic energy + Delta-G solvation = -16541.530072 eV Core-core repulsion = 13997.372416 eV Total energy + Delta-G solvation = -2544.157655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72376 -35.89051 -34.18985 -32.95381 -30.94690 -29.99682 -27.67551 -25.84922 -24.21173 -22.77455 -21.81881 -20.01616 -19.07216 -16.66457 -16.24735 -15.79503 -14.86071 -14.69939 -14.36569 -14.18562 -13.77862 -13.52321 -13.20783 -12.70394 -12.23731 -12.06212 -11.88081 -11.64731 -11.45230 -11.17036 -11.00904 -10.97359 -10.86080 -10.79755 -10.48916 -10.05133 -9.90847 -9.49895 -9.15197 -9.06613 -8.36757 -7.74355 -6.02766 -4.05102 3.30533 3.36845 3.40226 3.93384 4.31217 4.49269 4.92557 5.04506 5.18905 5.26943 5.33604 5.39279 5.43097 5.49174 5.59883 5.68703 5.83566 5.90469 5.95519 6.02539 6.07105 6.14379 6.26041 6.30079 6.33960 6.42869 6.47339 6.58849 6.89233 7.43163 7.45378 7.54917 7.72801 7.82002 8.01107 8.39976 9.01242 9.58823 11.08658 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051817 B = 0.005603 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.231390 B = 4996.407686 C = 5365.778594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.067 0.933 5 C 0.023 3.977 6 N -0.535 5.535 7 C 0.062 3.938 8 C 0.022 3.978 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.022 3.978 18 C 0.089 3.911 19 H 0.099 0.901 20 C -0.172 4.172 21 O -0.381 6.381 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.101 0.899 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -9.312 0.437 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.085 0.915 5 C -0.106 4.106 6 N -0.259 5.259 7 C -0.065 4.065 8 C -0.015 4.015 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.107 4.107 18 C 0.031 3.969 19 H 0.117 0.883 20 C -0.230 4.230 21 O -0.300 6.300 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.701 -8.949 0.638 15.550 hybrid contribution 1.726 -0.174 -0.382 1.776 sum -10.975 -9.123 0.256 14.274 Atomic orbital electron populations 1.21688 0.95333 1.01119 1.02268 1.21523 0.96587 0.94762 1.02478 1.22163 0.93237 0.93308 0.87949 0.91539 1.22768 0.95462 0.91088 1.01291 1.62346 1.15080 1.15276 1.33241 1.22354 0.83335 1.00925 0.99881 1.19226 0.95447 0.89802 0.97069 1.21176 0.92526 0.96554 1.45830 0.92766 1.24986 0.98398 0.95671 0.95201 1.69962 1.35633 1.01253 1.46442 0.86583 0.85641 0.77295 0.78418 1.20699 1.21162 1.19869 1.22847 0.94710 1.02280 0.90827 1.22305 0.93127 0.82175 0.99245 0.88283 1.22248 0.99717 1.00695 1.00307 1.87954 1.77063 1.26368 1.38617 0.91992 0.93074 0.92968 0.91413 0.90780 0.94698 0.90424 0.96172 0.91832 0.96233 0.95679 0.92965 0.88055 0.94694 0.91045 0.91517 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 37.16 0.36 -1.11 16 2 C -0.12 -1.29 5.64 -26.73 -0.15 -1.44 16 3 C 0.09 1.27 2.40 -26.68 -0.06 1.20 16 4 H 0.07 0.93 6.50 -51.93 -0.34 0.59 16 5 C 0.02 0.36 4.91 -3.71 -0.02 0.34 16 6 N -0.53 -9.94 4.24 -234.30 -0.99 -10.93 16 7 C 0.06 1.32 5.22 -3.82 -0.02 1.30 16 8 C 0.02 0.56 4.24 -27.88 -0.12 0.44 16 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 10 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 17 C 0.02 0.39 4.35 -3.71 -0.02 0.37 16 18 C 0.09 1.36 3.92 -26.69 -0.10 1.25 16 19 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 20 C -0.17 -2.45 8.88 37.16 0.33 -2.12 16 21 O -0.38 -5.84 9.83 -35.23 -0.35 -6.19 16 22 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.02 0.53 6.28 -51.93 -0.33 0.20 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 2.01 6.05 -51.93 -0.31 1.70 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.09 6.13 -51.93 -0.32 0.77 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -29.69 296.78 -8.10 -37.79 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.74 Total: -2.51 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.21 Total: -13.28 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.26 Total: -36.89 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.35 Total: -6.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.69 -8.10 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609540866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.907 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds