Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47109 * 2 1 4 4 H 1.09004 * 109.50347 * 54.91700 * 3 2 1 5 5 C 1.53100 * 109.50478 * 175.00082 * 3 2 1 6 6 N 1.47020 * 109.25460 * 176.78606 * 5 3 2 7 7 C 1.46898 * 110.99771 * 177.60927 * 6 5 3 8 8 C 1.53006 * 109.47006 * 169.99609 * 7 6 5 9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48510 * 109.46866 * 90.00390 * 13 11 9 15 15 H 1.48502 * 109.47245 * 210.00175 * 13 11 9 16 16 H 1.48494 * 109.47271 * 330.00312 * 13 11 9 17 17 C 1.47020 * 110.74983 * 301.38404 * 6 5 3 18 18 C 1.53092 * 109.25811 * 58.61896 * 17 6 5 19 19 H 1.09007 * 109.54316 * 183.19694 * 18 17 6 20 20 C 1.52995 * 109.50803 * 63.08510 * 18 17 6 21 21 O 1.43009 * 109.50624 * 294.78524 * 3 2 1 22 22 H 1.09000 * 109.47317 * 59.99885 * 1 2 3 23 23 H 1.08994 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46725 * 299.99601 * 1 2 3 25 25 H 1.09005 * 109.47188 * 240.00165 * 2 1 3 26 26 H 1.09000 * 109.47317 * 120.00115 * 2 1 3 27 27 H 1.09000 * 109.50526 * 56.85241 * 5 3 2 28 28 H 1.08990 * 109.50974 * 296.71614 * 5 3 2 29 29 H 1.09001 * 109.47062 * 49.99863 * 7 6 5 30 30 H 1.08993 * 109.47084 * 289.99310 * 7 6 5 31 31 H 1.09001 * 109.46801 * 300.00064 * 8 7 6 32 32 H 1.09001 * 109.46998 * 59.99660 * 8 7 6 33 33 H 0.96997 * 119.99752 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.50618 * 178.55233 * 17 6 5 35 35 H 1.09003 * 109.50594 * 298.67788 * 17 6 5 36 36 H 1.09005 * 109.47138 * 300.21479 * 20 18 17 37 37 H 1.08999 * 109.47490 * 60.21667 * 20 18 17 38 38 H 1.09005 * 109.47227 * 180.21744 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9825 0.8408 5 6 3.5658 1.4453 0.1258 6 7 4.0562 2.8291 0.0477 7 6 5.5140 2.8815 0.2212 8 6 6.0169 4.2878 -0.1112 9 6 7.5123 4.3417 0.0674 10 1 8.0503 3.4610 0.3857 11 6 8.1938 5.5152 -0.1766 12 7 7.5388 6.5875 -0.5647 13 14 10.0475 5.5818 0.0440 14 1 10.7115 5.2212 -1.2345 15 1 10.4498 6.9553 0.4405 16 1 10.4550 4.6221 1.1013 17 6 3.6538 3.4536 -1.2209 18 6 2.1272 3.4307 -1.3331 19 1 1.8262 3.8411 -2.2971 20 6 1.5195 4.2707 -0.2080 21 8 1.6664 2.0811 -1.2238 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9988 0.8594 -0.6850 28 1 3.8529 1.0109 1.0833 29 1 5.9854 2.1599 -0.4459 30 1 5.7659 2.6403 1.2539 31 1 5.7650 4.5290 -1.1439 32 1 5.5454 5.0094 0.5559 33 1 8.0182 7.4132 -0.7360 34 1 4.0052 4.4851 -1.2464 35 1 4.0884 2.8998 -2.0532 36 1 1.8221 3.8606 0.7556 37 1 1.8710 5.2990 -0.2918 38 1 0.4325 4.2508 -0.2861 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609540866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = -78.442956 kcal Electronic energy + Delta-G solvation = -16542.343165 eV Core-core repulsion = 13997.372416 eV Total energy + Delta-G solvation = -2544.970749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01876 -37.42408 -35.23369 -35.02714 -32.19688 -31.71509 -29.03703 -27.43749 -25.84303 -24.15025 -23.11461 -21.55463 -20.40153 -18.67906 -17.47660 -17.23332 -16.58744 -16.27067 -15.85532 -15.55085 -15.00981 -14.67205 -14.54526 -14.21843 -14.16857 -13.27885 -13.23829 -12.93402 -12.85520 -12.73167 -12.68157 -12.48527 -12.06081 -11.98305 -11.93949 -11.83647 -11.39390 -11.25793 -11.06556 -10.56758 -10.44941 -9.27932 -8.22325 -6.33613 1.39336 1.40529 1.51791 2.38599 2.76695 2.95905 3.11299 3.78902 3.89148 4.03664 4.10596 4.20462 4.34465 4.40105 4.44014 4.48711 4.55460 4.60331 4.75221 4.82953 4.88712 4.93335 5.00249 5.00937 5.10159 5.13597 5.29511 5.39152 5.41178 5.49490 5.60207 5.74190 5.98535 6.14950 6.26071 6.29724 6.82111 7.35542 8.89602 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051817 B = 0.005603 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.231390 B = 4996.407686 C = 5365.778594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.092 3.908 4 H 0.069 0.931 5 C 0.021 3.979 6 N -0.539 5.539 7 C 0.076 3.924 8 C 0.032 3.968 9 C -0.547 4.547 10 H 0.058 0.942 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.966 3.034 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.263 1.263 17 C 0.024 3.976 18 C 0.094 3.906 19 H 0.116 0.884 20 C -0.165 4.165 21 O -0.385 6.385 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.017 0.983 30 H 0.067 0.933 31 H -0.001 1.001 32 H -0.004 1.004 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 -10.613 0.959 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C 0.034 3.966 4 H 0.087 0.913 5 C -0.107 4.107 6 N -0.263 5.263 7 C -0.051 4.051 8 C -0.005 4.005 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.790 3.210 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.188 1.188 17 C -0.104 4.104 18 C 0.036 3.964 19 H 0.134 0.866 20 C -0.223 4.223 21 O -0.305 6.305 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.000 -10.270 1.163 16.608 hybrid contribution 1.778 0.229 -0.550 1.876 sum -11.222 -10.041 0.613 15.071 Atomic orbital electron populations 1.21660 0.94294 1.02207 1.01917 1.21549 0.97432 0.92685 1.03292 1.22314 0.91728 0.95053 0.87495 0.91311 1.22913 0.96864 0.88971 1.01918 1.62308 1.12968 1.17524 1.33534 1.22036 0.85374 0.97845 0.99830 1.19029 0.94625 0.91770 0.95090 1.21603 0.93846 0.97001 1.46076 0.92329 1.25929 1.03740 0.95165 0.94590 1.70093 1.37802 1.01915 1.47142 0.85440 0.79144 0.77613 0.78799 1.19837 1.20595 1.18757 1.22794 0.97065 1.00404 0.90179 1.22307 0.90732 0.82760 1.00621 0.86597 1.22176 1.00950 0.99971 0.99162 1.87965 1.76812 1.26203 1.39473 0.93200 0.91313 0.92450 0.91719 0.88863 0.95210 0.88891 0.96471 0.91437 0.98240 0.98587 0.92696 0.90732 0.95916 0.92166 0.92069 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.81 71.98 0.71 -1.79 16 2 C -0.11 -2.21 5.64 30.60 0.17 -2.04 16 3 C 0.09 2.38 2.40 30.63 0.07 2.46 16 4 H 0.07 1.79 6.50 -2.39 -0.02 1.77 16 5 C 0.02 0.65 4.91 86.31 0.42 1.07 16 6 N -0.54 -20.12 4.24 -895.19 -3.80 -23.91 16 7 C 0.08 3.33 5.22 86.31 0.45 3.78 16 8 C 0.03 1.72 4.24 29.85 0.13 1.85 16 9 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 11 C 0.00 0.23 5.46 84.65 0.46 0.69 16 12 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 13 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 C 0.02 0.89 4.35 86.31 0.38 1.26 16 18 C 0.09 2.78 3.92 30.62 0.12 2.90 16 19 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 20 C -0.17 -4.55 8.88 71.98 0.64 -3.91 16 21 O -0.39 -11.24 9.83 -148.98 -1.46 -12.71 16 22 H 0.05 0.99 7.83 -2.39 -0.02 0.97 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.00 -0.04 6.28 -2.39 -0.01 -0.05 16 32 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.07 3.13 6.05 -2.39 -0.01 3.12 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.79 6.13 -2.38 -0.01 1.77 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -63.69 296.78 1.83 -61.86 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.00 Total: 9.62 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.78 Total: -24.95 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.51 Total: -80.21 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.46 Total: -12.71 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.69 1.83 -61.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609540866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.580 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds