Wall clock time and date at job start Sun Mar 29 2020 21:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 H 1.09003 * 109.46636 * 54.99718 * 3 2 1 5 5 O 1.42896 * 109.46991 * 295.00296 * 3 2 1 6 6 C 1.52996 * 109.47106 * 174.99760 * 3 2 1 7 7 H 1.08997 * 109.46539 * 301.48990 * 6 3 2 8 8 C 1.53039 * 109.46151 * 61.46715 * 6 3 2 9 9 C 1.53114 * 109.27856 * 179.19463 * 8 6 3 10 10 C 1.53120 * 109.16229 * 302.34597 * 9 8 6 11 11 C 1.53033 * 109.27598 * 57.65377 * 10 9 8 12 12 N 1.46842 * 109.46131 * 181.50833 * 6 3 2 13 13 C 1.46897 * 110.99971 * 54.14792 * 12 6 3 14 14 C 1.50701 * 109.47100 * 64.10579 * 13 12 6 15 15 H 1.08000 * 120.00240 * 3.35610 * 14 13 12 16 16 C 1.37879 * 119.99647 * 183.36565 * 14 13 12 17 17 N 1.31508 * 120.00578 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47093 * 59.99502 * 18 16 14 20 20 H 1.48494 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47233 * 300.00020 * 18 16 14 22 22 H 1.09003 * 109.46676 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46804 * 299.99735 * 1 2 3 24 24 H 1.09000 * 109.47089 * 60.00506 * 1 2 3 25 25 H 1.08999 * 109.46804 * 240.00265 * 2 1 3 26 26 H 1.08997 * 109.47365 * 119.99943 * 2 1 3 27 27 H 0.96697 * 114.00136 * 299.99511 * 5 3 2 28 28 H 1.09002 * 109.50285 * 299.14050 * 8 6 3 29 29 H 1.09003 * 109.50342 * 59.21450 * 8 6 3 30 30 H 1.09001 * 109.52612 * 62.25541 * 9 8 6 31 31 H 1.09000 * 109.52404 * 182.37694 * 9 8 6 32 32 H 1.08996 * 109.50575 * 177.59815 * 10 9 8 33 33 H 1.09005 * 109.50304 * 297.67557 * 10 9 8 34 34 H 1.09000 * 109.46489 * 60.83911 * 11 10 9 35 35 H 1.09002 * 109.46255 * 180.81592 * 11 10 9 36 36 H 1.09003 * 109.47135 * 184.09902 * 13 12 6 37 37 H 1.08994 * 109.47149 * 304.10034 * 13 12 6 38 38 H 0.96998 * 120.00291 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4444 0.1258 7 1 3.8542 0.9338 1.0442 8 6 4.1764 0.7193 -1.0751 9 6 5.7027 0.7411 -0.9553 10 6 6.1794 2.1937 -0.8703 11 6 5.5098 2.8761 0.3247 12 7 4.0510 2.8295 0.1621 13 6 3.3789 3.5958 1.2199 14 6 3.7323 3.0133 2.5640 15 1 4.4327 2.1938 2.6302 16 6 3.1614 3.5264 3.7094 17 7 2.3088 4.5244 3.6289 18 14 3.5989 2.8038 5.3755 19 1 5.0588 2.9447 5.6082 20 1 2.8565 3.5270 6.4390 21 1 3.2297 1.3658 5.4038 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 2.0141 1.6543 -2.0138 28 1 3.8275 -0.3132 -1.0931 29 1 3.8758 1.2210 -1.9950 30 1 6.0052 0.2052 -0.0556 31 1 6.1437 0.2627 -1.8298 32 1 7.2616 2.2147 -0.7419 33 1 5.9115 2.7189 -1.7871 34 1 5.7898 2.3586 1.2422 35 1 5.8360 3.9147 0.3795 36 1 3.7038 4.6355 1.1778 37 1 2.2998 3.5462 1.0747 38 1 1.9068 4.8851 4.4347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609625411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:24 Heat of formation + Delta-G solvation = -68.335348 kcal Electronic energy + Delta-G solvation = -17232.859149 eV Core-core repulsion = 14688.326699 eV Total energy + Delta-G solvation = -2544.532450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15521 -36.19922 -33.65240 -32.35660 -31.75928 -30.21486 -26.79687 -25.58579 -23.71684 -22.43866 -20.99724 -20.30225 -18.88883 -16.35847 -15.81316 -15.19053 -15.04167 -14.59247 -14.27758 -14.00184 -13.43569 -13.09127 -12.73652 -12.50330 -12.19209 -11.75606 -11.65023 -11.43390 -11.10248 -10.94101 -10.75267 -10.62490 -10.48572 -10.46705 -10.36343 -10.03921 -9.86852 -9.74669 -9.23563 -8.95592 -8.38814 -7.06182 -5.99578 -4.09917 3.27643 3.33382 3.35079 4.40850 4.78579 5.12546 5.21766 5.28490 5.31297 5.36546 5.48610 5.53975 5.62053 5.77426 5.97640 6.02427 6.05357 6.16942 6.23362 6.27849 6.33794 6.36715 6.37443 6.49831 6.56228 6.67574 6.72876 6.89541 6.98183 7.36844 7.59758 7.95829 8.12296 8.27820 8.37001 8.42583 9.02009 9.56832 11.04240 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.011058 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.823627 B = 2531.471606 C = 3269.910227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.154 4.154 3 C 0.112 3.888 4 H 0.115 0.885 5 O -0.548 6.548 6 C 0.065 3.935 7 H 0.048 0.952 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.117 4.117 11 C 0.063 3.937 12 N -0.526 5.526 13 C 0.184 3.816 14 C -0.551 4.551 15 H 0.054 0.946 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.278 1.278 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.358 0.642 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.042 0.958 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -8.604 -8.400 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C 0.053 3.947 4 H 0.133 0.867 5 O -0.352 6.352 6 C -0.044 4.044 7 H 0.066 0.934 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.155 4.155 11 C -0.066 4.066 12 N -0.250 5.250 13 C 0.059 3.941 14 C -0.590 4.590 15 H 0.072 0.928 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.713 3.287 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.203 0.797 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.617 -7.842 -8.320 11.547 hybrid contribution 0.812 -1.158 1.651 2.174 sum 2.429 -8.999 -6.670 11.462 Atomic orbital electron populations 1.21683 0.95651 1.00535 1.02455 1.22267 0.96653 0.98408 1.01936 1.22107 0.93050 0.91474 0.88060 0.86734 1.86624 1.76134 1.57360 1.15094 1.22000 0.94734 0.91224 0.96455 0.93401 1.21703 0.95464 0.99063 0.99340 1.21503 0.95971 0.97145 1.00685 1.21628 0.98536 0.95508 0.99829 1.21866 0.89537 0.99756 0.95444 1.62387 1.03589 1.10384 1.48669 1.19813 0.95299 0.93057 0.85971 1.21745 1.26359 1.18096 0.92778 0.92779 1.24946 0.94908 0.94864 0.98920 1.69935 1.29061 1.24812 1.28880 0.86773 0.78567 0.79279 0.84090 1.20341 1.21190 1.20325 0.93609 0.92602 0.92338 0.92237 0.91464 0.79654 0.92440 0.91717 0.92684 0.92882 0.92792 0.91881 0.94707 0.91828 0.95593 0.93965 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.81 37.16 0.36 -1.70 16 2 C -0.15 -2.31 5.15 -26.72 -0.14 -2.45 16 3 C 0.11 2.07 2.28 -26.73 -0.06 2.01 16 4 H 0.12 2.60 6.15 -51.93 -0.32 2.28 16 5 O -0.55 -9.91 12.71 -35.23 -0.45 -10.36 16 6 C 0.07 1.23 1.38 -67.73 -0.09 1.14 16 7 H 0.05 1.02 6.98 -51.93 -0.36 0.65 16 8 C -0.12 -1.76 4.71 -26.65 -0.13 -1.89 16 9 C -0.12 -1.66 6.00 -26.61 -0.16 -1.82 16 10 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 11 C 0.06 1.24 5.04 -3.83 -0.02 1.22 16 12 N -0.53 -11.31 4.59 -228.13 -1.05 -12.36 16 13 C 0.18 4.78 4.70 -4.98 -0.02 4.75 16 14 C -0.55 -15.02 7.73 -34.44 -0.27 -15.28 16 15 H 0.05 1.47 5.84 -52.49 -0.31 1.16 16 16 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 25 H 0.06 0.77 6.75 -51.93 -0.35 0.42 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.36 5.13 7.27 45.56 0.33 5.46 16 28 H 0.06 0.76 6.63 -51.93 -0.34 0.41 16 29 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.75 6.62 -51.93 -0.34 0.40 16 35 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 1.18 5.94 -51.93 -0.31 0.88 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 288.08 15.07 4.34 4.34 Total: -1.00 -29.19 288.08 -7.92 -37.10 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.70 Total: 4.55 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.78 Total: -14.25 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.31 Total: -37.78 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.45 Total: -10.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.19 -7.92 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609625411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.232 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds