Wall clock time and date at job start Sun Mar 29 2020 21:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46939 * 2 1 4 4 H 1.09003 * 109.46636 * 54.99718 * 3 2 1 5 5 O 1.42896 * 109.46991 * 295.00296 * 3 2 1 6 6 C 1.52996 * 109.47106 * 174.99760 * 3 2 1 7 7 H 1.08997 * 109.46539 * 301.48990 * 6 3 2 8 8 C 1.53039 * 109.46151 * 61.46715 * 6 3 2 9 9 C 1.53114 * 109.27856 * 179.19463 * 8 6 3 10 10 C 1.53120 * 109.16229 * 302.34597 * 9 8 6 11 11 C 1.53033 * 109.27598 * 57.65377 * 10 9 8 12 12 N 1.46842 * 109.46131 * 181.50833 * 6 3 2 13 13 C 1.46897 * 110.99971 * 54.14792 * 12 6 3 14 14 C 1.50701 * 109.47100 * 64.10579 * 13 12 6 15 15 H 1.08000 * 120.00240 * 3.35610 * 14 13 12 16 16 C 1.37879 * 119.99647 * 183.36565 * 14 13 12 17 17 N 1.31508 * 120.00578 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47093 * 59.99502 * 18 16 14 20 20 H 1.48494 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47233 * 300.00020 * 18 16 14 22 22 H 1.09003 * 109.46676 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46804 * 299.99735 * 1 2 3 24 24 H 1.09000 * 109.47089 * 60.00506 * 1 2 3 25 25 H 1.08999 * 109.46804 * 240.00265 * 2 1 3 26 26 H 1.08997 * 109.47365 * 119.99943 * 2 1 3 27 27 H 0.96697 * 114.00136 * 299.99511 * 5 3 2 28 28 H 1.09002 * 109.50285 * 299.14050 * 8 6 3 29 29 H 1.09003 * 109.50342 * 59.21450 * 8 6 3 30 30 H 1.09001 * 109.52612 * 62.25541 * 9 8 6 31 31 H 1.09000 * 109.52404 * 182.37694 * 9 8 6 32 32 H 1.08996 * 109.50575 * 177.59815 * 10 9 8 33 33 H 1.09005 * 109.50304 * 297.67557 * 10 9 8 34 34 H 1.09000 * 109.46489 * 60.83911 * 11 10 9 35 35 H 1.09002 * 109.46255 * 180.81592 * 11 10 9 36 36 H 1.09003 * 109.47135 * 184.09902 * 13 12 6 37 37 H 1.08994 * 109.47149 * 304.10034 * 13 12 6 38 38 H 0.96998 * 120.00291 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4444 0.1258 7 1 3.8542 0.9338 1.0442 8 6 4.1764 0.7193 -1.0751 9 6 5.7027 0.7411 -0.9553 10 6 6.1794 2.1937 -0.8703 11 6 5.5098 2.8761 0.3247 12 7 4.0510 2.8295 0.1621 13 6 3.3789 3.5958 1.2199 14 6 3.7323 3.0133 2.5640 15 1 4.4327 2.1938 2.6302 16 6 3.1614 3.5264 3.7094 17 7 2.3088 4.5244 3.6289 18 14 3.5989 2.8038 5.3755 19 1 5.0588 2.9447 5.6082 20 1 2.8565 3.5270 6.4390 21 1 3.2297 1.3658 5.4038 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 2.0141 1.6543 -2.0138 28 1 3.8275 -0.3132 -1.0931 29 1 3.8758 1.2210 -1.9950 30 1 6.0052 0.2052 -0.0556 31 1 6.1437 0.2627 -1.8298 32 1 7.2616 2.2147 -0.7419 33 1 5.9115 2.7189 -1.7871 34 1 5.7898 2.3586 1.2422 35 1 5.8360 3.9147 0.3795 36 1 3.7038 4.6355 1.1778 37 1 2.2998 3.5462 1.0747 38 1 1.9068 4.8851 4.4347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609625411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:23 Heat of formation + Delta-G solvation = -89.455578 kcal Electronic energy + Delta-G solvation = -17233.774991 eV Core-core repulsion = 14688.326699 eV Total energy + Delta-G solvation = -2545.448292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67075 -37.67023 -35.48466 -33.67154 -33.62886 -31.58631 -28.73725 -27.03622 -25.49739 -23.87717 -22.57010 -21.69657 -20.46504 -18.37759 -17.37912 -16.77444 -16.57867 -16.16755 -15.91220 -15.48070 -14.85591 -14.62963 -14.30191 -14.07050 -13.64774 -13.28421 -13.05450 -12.97095 -12.86998 -12.68002 -12.38240 -12.14262 -12.06245 -11.93301 -11.80469 -11.75140 -11.51195 -11.31201 -10.78055 -10.60165 -10.37851 -8.92986 -8.13679 -6.35857 1.33190 1.34646 1.42892 2.34720 3.08415 3.26773 3.76157 3.86388 4.00702 4.11511 4.21831 4.26175 4.38668 4.40331 4.62089 4.71916 4.78473 4.87559 4.94799 4.96914 5.07616 5.09764 5.12848 5.17725 5.24853 5.30678 5.34535 5.39897 5.41794 5.49500 5.56831 5.77268 6.07823 6.31940 6.65713 6.87047 7.08699 7.35897 8.86553 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.011058 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.823627 B = 2531.471606 C = 3269.910227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 C 0.118 3.882 4 H 0.059 0.941 5 O -0.562 6.562 6 C 0.065 3.935 7 H 0.021 0.979 8 C -0.111 4.111 9 C -0.114 4.114 10 C -0.108 4.108 11 C 0.060 3.940 12 N -0.528 5.528 13 C 0.201 3.799 14 C -0.554 4.554 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.268 1.268 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.377 0.623 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.013 0.987 35 H 0.046 0.954 36 H -0.011 1.011 37 H 0.014 0.986 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -11.151 -9.622 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C 0.058 3.942 4 H 0.077 0.923 5 O -0.369 6.369 6 C -0.044 4.044 7 H 0.039 0.961 8 C -0.148 4.148 9 C -0.151 4.151 10 C -0.146 4.146 11 C -0.069 4.069 12 N -0.251 5.251 13 C 0.074 3.926 14 C -0.593 4.593 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.193 1.193 22 H 0.092 0.908 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.065 0.935 36 H 0.007 0.993 37 H 0.032 0.968 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.682 -10.409 -9.566 14.389 hybrid contribution 0.474 -0.315 1.977 2.057 sum 3.156 -10.724 -7.589 13.512 Atomic orbital electron populations 1.21671 0.95099 1.01966 1.01394 1.22186 0.97104 0.95704 1.03321 1.21823 0.92589 0.93040 0.86727 0.92251 1.86584 1.76410 1.58193 1.15708 1.22112 0.95281 0.89434 0.97566 0.96093 1.21700 0.95853 1.00013 0.97234 1.21533 0.95434 0.96045 1.02132 1.21577 0.99378 0.96161 0.97474 1.21945 0.88659 0.99246 0.97010 1.62336 1.04468 1.12016 1.46290 1.19395 0.93957 0.91883 0.87385 1.21928 1.25988 1.17820 0.93542 0.92848 1.25814 0.94744 0.95203 1.02971 1.70072 1.30223 1.26245 1.29980 0.85682 0.78506 0.78796 0.79190 1.19578 1.20661 1.19304 0.90847 0.94891 0.92253 0.88868 0.91818 0.77438 0.89584 0.90470 0.93198 0.89240 0.90591 0.91247 0.96859 0.93490 0.99271 0.96787 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.81 71.99 0.71 -3.18 16 2 C -0.15 -4.09 5.15 30.60 0.16 -3.94 16 3 C 0.12 4.39 2.28 30.59 0.07 4.46 16 4 H 0.06 2.88 6.15 -2.39 -0.01 2.87 16 5 O -0.56 -20.07 12.71 -148.98 -1.89 -21.96 16 6 C 0.07 2.44 1.38 44.94 0.06 2.51 16 7 H 0.02 0.90 6.98 -2.39 -0.02 0.89 16 8 C -0.11 -2.92 4.71 30.65 0.14 -2.78 16 9 C -0.11 -2.84 6.00 30.67 0.18 -2.66 16 10 C -0.11 -3.12 6.09 30.65 0.19 -2.93 16 11 C 0.06 2.40 5.04 86.32 0.44 2.83 16 12 N -0.53 -23.28 4.59 -875.68 -4.02 -27.29 16 13 C 0.20 11.06 4.70 85.56 0.40 11.47 16 14 C -0.55 -31.49 7.73 25.60 0.20 -31.29 16 15 H 0.05 2.99 5.84 -2.91 -0.02 2.97 16 16 C 0.01 0.70 5.46 84.66 0.46 1.16 16 17 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 18 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.58 7.82 -2.39 -0.02 1.56 16 25 H 0.09 2.02 6.75 -2.39 -0.02 2.00 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.38 9.90 7.27 -74.06 -0.54 9.36 16 28 H 0.09 1.84 6.63 -2.39 -0.02 1.82 16 29 H 0.08 1.89 6.72 -2.39 -0.02 1.88 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.01 0.58 6.62 -2.39 -0.02 0.56 16 35 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.01 0.85 5.94 -2.39 -0.01 0.84 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -66.74 288.08 -0.10 -66.84 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.49 Total: 16.47 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.01 Total: -24.36 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -3.73 Total: -83.72 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.89 Total: -21.96 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.74 -0.10 -66.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609625411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.615 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds