Wall clock time and date at job start Sun Mar 29 2020 21:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 H 1.08997 * 109.47347 * 54.56082 * 3 2 1 5 5 O 1.42904 * 109.46837 * 294.55954 * 3 2 1 6 6 C 1.52998 * 109.47243 * 174.56132 * 3 2 1 7 7 H 1.08997 * 109.45358 * 182.70083 * 6 3 2 8 8 C 1.53043 * 109.45999 * 62.73115 * 6 3 2 9 9 C 1.53125 * 109.27457 * 180.80725 * 8 6 3 10 10 C 1.53114 * 109.16338 * 57.65062 * 9 8 6 11 11 C 1.53035 * 109.27887 * 302.34650 * 10 9 8 12 12 N 1.46839 * 109.46401 * 302.67816 * 6 3 2 13 13 C 1.46899 * 110.99812 * 305.85424 * 12 6 3 14 14 C 1.50701 * 109.47111 * 301.55386 * 13 12 6 15 15 H 1.07993 * 120.00122 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99850 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99941 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47072 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47385 * 239.99768 * 18 16 14 21 21 H 1.48503 * 109.47332 * 119.99528 * 18 16 14 22 22 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47407 * 300.00591 * 1 2 3 24 24 H 1.09010 * 109.46661 * 60.00764 * 1 2 3 25 25 H 1.08999 * 109.47441 * 239.99023 * 2 1 3 26 26 H 1.09002 * 109.46378 * 119.99460 * 2 1 3 27 27 H 0.96701 * 113.99944 * 300.00028 * 5 3 2 28 28 H 1.08991 * 109.50451 * 60.86332 * 8 6 3 29 29 H 1.08998 * 109.53110 * 300.75969 * 8 6 3 30 30 H 1.08997 * 109.52097 * 297.74415 * 9 8 6 31 31 H 1.09000 * 109.57387 * 177.59058 * 9 8 6 32 32 H 1.08996 * 109.50214 * 182.40117 * 10 9 8 33 33 H 1.09004 * 109.53604 * 62.30486 * 10 9 8 34 34 H 1.08997 * 109.45963 * 299.16191 * 11 10 9 35 35 H 1.09002 * 109.45521 * 179.18773 * 11 10 9 36 36 H 1.09005 * 109.47135 * 181.55322 * 13 12 6 37 37 H 1.09002 * 109.47284 * 61.55664 * 13 12 6 38 38 H 0.97001 * 119.99886 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9837 0.8372 5 8 1.6708 2.0782 -1.2254 6 6 3.5639 1.4446 0.1367 7 1 3.9226 2.4728 0.1849 8 6 4.1854 0.7440 -1.0737 9 6 5.7091 0.7308 -0.9227 10 6 6.0784 0.0289 0.3870 11 6 5.4020 0.7502 1.5549 12 7 3.9460 0.7350 1.3641 13 6 3.2560 1.2964 2.5332 14 6 3.5918 2.7600 2.6598 15 1 4.2520 3.2265 1.9438 16 6 3.0568 3.5034 3.6905 17 7 2.2532 2.9352 4.5629 18 14 3.4736 5.3175 3.8479 19 1 4.3921 5.7114 2.7495 20 1 4.1329 5.5623 5.1556 21 1 2.2274 6.1208 3.7637 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8902 25 1 1.8934 -0.5140 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.0287 1.6490 -2.0146 28 1 3.9144 1.2800 -1.9832 29 1 3.8165 -0.2800 -1.1311 30 1 6.0823 1.7548 -0.9050 31 1 6.1545 0.1953 -1.7612 32 1 7.1598 0.0539 0.5209 33 1 5.7397 -1.0067 0.3536 34 1 5.7521 1.7816 1.5965 35 1 5.6513 0.2442 2.4876 36 1 3.5780 0.7706 3.4322 37 1 2.1793 1.1799 2.4102 38 1 2.0371 1.9931 4.4814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609625412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:26 Heat of formation + Delta-G solvation = -73.044830 kcal Electronic energy + Delta-G solvation = -17333.384411 eV Core-core repulsion = 14788.647743 eV Total energy + Delta-G solvation = -2544.736668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32309 -36.38427 -33.98890 -32.39947 -31.67543 -30.28777 -26.49493 -25.44001 -23.68008 -22.43284 -21.38181 -20.65356 -18.74809 -16.87046 -15.85201 -15.47130 -14.98372 -14.36164 -14.12504 -13.80160 -13.70857 -13.19460 -12.92186 -12.40697 -12.37193 -12.03119 -11.66078 -11.38030 -11.16544 -10.93840 -10.87608 -10.63648 -10.55008 -10.50560 -10.22793 -10.16773 -9.85266 -9.55194 -9.13189 -9.10751 -8.37446 -7.14115 -6.39043 -4.13318 3.41523 3.44652 3.57645 4.50380 4.72038 4.99280 5.15179 5.22060 5.34132 5.34893 5.42126 5.57790 5.62139 5.74097 5.95927 5.98393 6.05373 6.15980 6.19451 6.26665 6.28068 6.30793 6.43258 6.46604 6.58804 6.72155 6.74660 6.84259 6.92799 7.03228 7.21675 7.83491 8.04907 8.10726 8.21330 8.49717 8.79398 9.59556 10.98008 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.010969 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.918728 B = 2551.993359 C = 3167.664345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.112 0.888 5 O -0.564 6.564 6 C 0.067 3.933 7 H 0.053 0.947 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.116 4.116 11 C 0.064 3.936 12 N -0.525 5.525 13 C 0.170 3.830 14 C -0.627 4.627 15 H 0.051 0.949 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 1.068 2.932 19 H -0.291 1.291 20 H -0.287 1.287 21 H -0.286 1.286 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.360 0.640 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -5.738 -10.433 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.054 3.946 4 H 0.129 0.871 5 O -0.368 6.368 6 C -0.043 4.043 7 H 0.071 0.929 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.154 4.154 11 C -0.065 4.065 12 N -0.251 5.251 13 C 0.044 3.956 14 C -0.666 4.666 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.545 5.545 18 Si 0.897 3.103 19 H -0.217 1.217 20 H -0.214 1.214 21 H -0.212 1.212 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.207 0.793 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.258 -4.476 -9.154 10.437 hybrid contribution 0.935 -0.830 -1.068 1.644 sum 3.193 -5.306 -10.222 11.952 Atomic orbital electron populations 1.21730 0.96396 1.00487 1.01937 1.22138 0.95444 0.97794 1.02899 1.22062 0.93291 0.92779 0.86480 0.87054 1.86620 1.76677 1.57754 1.15789 1.21984 0.95074 0.96792 0.90435 0.92923 1.21725 0.95578 1.00964 0.97444 1.21500 0.96066 1.00375 0.97380 1.21617 0.98895 0.99872 0.95037 1.21848 0.88950 0.98902 0.96758 1.62378 1.06002 1.53457 1.03221 1.19919 0.94171 0.93738 0.87750 1.22566 1.32929 0.95953 1.15153 0.93080 1.25713 0.93918 1.05930 0.92628 1.70740 1.33353 1.14330 1.36064 0.83554 0.76187 0.74905 0.75667 1.21694 1.21368 1.21243 0.93605 0.92818 0.92855 0.92699 0.89691 0.79345 0.92526 0.91476 0.92556 0.92744 0.92579 0.91916 0.94430 0.91871 0.96299 0.95545 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.81 37.16 0.36 -1.90 16 2 C -0.15 -2.37 4.88 -26.73 -0.13 -2.50 16 3 C 0.11 2.12 2.31 -26.73 -0.06 2.06 16 4 H 0.11 2.56 6.40 -51.93 -0.33 2.23 16 5 O -0.56 -9.85 12.82 -35.23 -0.45 -10.30 16 6 C 0.07 1.27 1.44 -67.72 -0.10 1.17 16 7 H 0.05 1.19 6.58 -51.93 -0.34 0.85 16 8 C -0.12 -1.79 4.71 -26.64 -0.13 -1.92 16 9 C -0.12 -1.66 6.00 -26.61 -0.16 -1.82 16 10 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16 11 C 0.06 1.23 5.13 -3.84 -0.02 1.21 16 12 N -0.53 -10.80 3.78 -228.13 -0.86 -11.66 16 13 C 0.17 4.20 3.67 -4.98 -0.02 4.19 16 14 C -0.63 -17.12 7.58 -34.44 -0.26 -17.38 16 15 H 0.05 1.43 5.84 -52.49 -0.31 1.12 16 16 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 17 N -0.91 -27.19 13.65 55.43 0.76 -26.43 16 18 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.78 7.84 -51.92 -0.41 0.38 16 25 H 0.05 0.79 6.77 -51.93 -0.35 0.44 16 26 H 0.08 1.53 6.91 -51.93 -0.36 1.17 16 27 H 0.36 4.81 7.27 45.56 0.33 5.15 16 28 H 0.06 0.75 6.78 -51.93 -0.35 0.40 16 29 H 0.07 0.97 6.59 -51.93 -0.34 0.63 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.80 7.01 -51.93 -0.36 0.44 16 35 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.02 0.50 7.93 -51.93 -0.41 0.09 16 37 H 0.03 0.68 5.83 -51.93 -0.30 0.38 16 38 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 LS Contribution 284.46 15.07 4.29 4.29 Total: -1.00 -29.25 284.46 -7.71 -36.95 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.59 Total: 4.93 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.77 Total: -18.26 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.11 Total: -38.09 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.45 Total: -10.30 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.25 -7.71 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609625412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.091 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds