Wall clock time and date at job start Sun Mar 29 2020 21:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 H 1.09003 * 109.46995 * 55.00238 * 3 2 1 5 5 O 1.42893 * 109.47462 * 294.99977 * 3 2 1 6 6 C 1.53001 * 109.47025 * 174.99842 * 3 2 1 7 7 N 1.46900 * 109.47152 * 184.80274 * 6 3 2 8 8 C 1.46904 * 111.00073 * 162.39652 * 7 6 3 9 9 C 1.50702 * 109.46945 * 195.79429 * 8 7 6 10 10 H 1.07999 * 120.00184 * 5.05391 * 9 8 7 11 11 C 1.37882 * 119.99639 * 185.05691 * 9 8 7 12 12 N 1.31513 * 120.00164 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47285 * 59.99636 * 13 11 9 15 15 H 1.48492 * 109.46928 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46577 * 299.99454 * 13 11 9 17 17 C 1.46897 * 111.00460 * 286.35146 * 7 6 3 18 18 C 1.53005 * 109.46998 * 300.55032 * 17 7 6 19 19 C 1.52995 * 117.49846 * 244.17306 * 18 17 7 20 20 C 1.53002 * 117.49717 * 175.51388 * 18 17 7 21 21 H 1.08995 * 109.47365 * 59.99710 * 1 2 3 22 22 H 1.09002 * 109.47494 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47050 * 299.99736 * 1 2 3 24 24 H 1.09006 * 109.47050 * 240.00264 * 2 1 3 25 25 H 1.09005 * 109.47371 * 120.00408 * 2 1 3 26 26 H 0.96698 * 114.00433 * 300.00197 * 5 3 2 27 27 H 1.08992 * 109.47776 * 304.80716 * 6 3 2 28 28 H 1.09004 * 109.47068 * 64.81048 * 6 3 2 29 29 H 1.08999 * 109.46870 * 315.79232 * 8 7 6 30 30 H 1.08993 * 109.46763 * 75.79520 * 8 7 6 31 31 H 0.96994 * 120.00133 * 180.02562 * 12 11 9 32 32 H 1.09006 * 109.47149 * 60.54645 * 17 7 6 33 33 H 1.08997 * 109.47722 * 180.54920 * 17 7 6 34 34 H 1.08996 * 115.54848 * 29.84404 * 18 17 7 35 35 H 1.09004 * 117.50019 * 0.02562 * 19 18 17 36 36 H 1.08995 * 117.50279 * 145.01957 * 19 18 17 37 37 H 1.08998 * 117.49888 * 214.97498 * 20 18 17 38 38 H 1.09000 * 117.50003 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4443 0.1258 7 7 4.0449 2.8278 0.2414 8 6 5.4138 2.8672 0.7732 9 6 5.7311 4.2645 1.2402 10 1 4.9648 5.0254 1.2270 11 6 6.9998 4.5713 1.6844 12 7 7.9328 3.6446 1.7010 13 14 7.3931 6.3031 2.2640 14 1 6.5171 6.6521 3.4112 15 1 8.8144 6.3723 2.6882 16 1 7.1601 7.2614 1.1537 17 6 3.9615 3.5237 -1.0495 18 6 4.8108 2.7827 -2.0842 19 6 6.0178 3.5208 -2.6666 20 6 4.7718 3.2930 -3.5262 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.0141 1.6543 -2.0138 27 1 3.8569 0.8829 1.0132 28 1 4.0028 0.9805 -0.7581 29 1 5.4978 2.1760 1.6118 30 1 6.1157 2.5772 -0.0086 31 1 8.8252 3.8604 2.0138 32 1 2.9237 3.5491 -1.3822 33 1 4.3321 4.5426 -0.9377 34 1 4.9033 1.7073 -1.9332 35 1 6.2072 4.5341 -2.3123 36 1 6.9043 2.9308 -2.8991 37 1 4.8392 2.5531 -4.3238 38 1 4.1409 4.1562 -3.7377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610511705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:23 Heat of formation + Delta-G solvation = -31.891702 kcal Electronic energy + Delta-G solvation = -16632.084686 eV Core-core repulsion = 14089.132552 eV Total energy + Delta-G solvation = -2542.952135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.72650 -36.82683 -34.65512 -32.67994 -32.35701 -28.55429 -27.11295 -24.88981 -22.79931 -21.82168 -21.53427 -20.95633 -19.05919 -16.29419 -16.04301 -15.73668 -15.29085 -14.74525 -14.32869 -13.97880 -13.90790 -13.10463 -12.85602 -12.24167 -12.08465 -11.92840 -11.62873 -11.15220 -11.07961 -10.96242 -10.89439 -10.81932 -10.77014 -10.51089 -10.38499 -10.00302 -9.86775 -9.57982 -9.15497 -8.77544 -8.36220 -7.08685 -5.96008 -3.96231 3.36667 3.40432 3.43882 4.35591 4.46322 4.63856 4.84004 5.16943 5.26155 5.30131 5.33192 5.39289 5.53389 5.55482 5.69628 5.78680 5.88767 5.94762 6.00929 6.03262 6.13977 6.27446 6.29853 6.43940 6.48796 6.56395 6.66036 6.71146 7.09709 7.35243 7.50299 7.89171 7.94759 8.19664 8.30790 8.64672 9.12069 9.67304 11.14493 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.007694 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.868360 B = 3638.502557 C = 4261.173333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.156 4.156 3 C 0.113 3.887 4 H 0.102 0.898 5 O -0.553 6.553 6 C 0.018 3.982 7 N -0.526 5.526 8 C 0.189 3.811 9 C -0.499 4.499 10 H 0.060 0.940 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.081 3.919 18 C -0.173 4.173 19 C -0.167 4.167 20 C -0.190 4.190 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.365 0.635 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.018 0.982 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 -5.836 -7.123 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.053 3.947 4 H 0.120 0.880 5 O -0.358 6.358 6 C -0.111 4.111 7 N -0.248 5.248 8 C 0.064 3.936 9 C -0.538 4.538 10 H 0.079 0.921 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.047 4.047 18 C -0.193 4.193 19 C -0.204 4.204 20 C -0.227 4.227 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.212 0.788 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.092 -5.210 -6.286 12.981 hybrid contribution 1.451 -0.062 -0.519 1.542 sum -8.641 -5.272 -6.804 12.197 Atomic orbital electron populations 1.21679 0.95475 1.00837 1.02312 1.22227 0.96725 0.98106 1.02344 1.22049 0.93815 0.91302 0.87502 0.87984 1.86562 1.76893 1.56798 1.15550 1.22831 0.94935 0.92796 1.00546 1.62292 1.27186 1.11466 1.23863 1.19782 0.82211 0.97486 0.94136 1.21110 0.95419 0.95791 1.41501 0.92139 1.24957 0.96291 0.97117 0.96185 1.69946 1.03109 1.33011 1.47985 0.86623 0.77040 0.84894 0.79210 1.20259 1.21476 1.20351 1.22057 0.98983 0.97633 0.86029 1.23067 1.02005 0.99579 0.94620 1.22885 0.91795 1.02276 1.03432 1.22887 1.02732 1.03186 0.93922 0.92254 0.93387 0.92776 0.92162 0.91235 0.78826 0.91077 0.95112 0.96377 0.97770 0.93064 0.89177 0.90853 0.88907 0.88587 0.89937 0.90036 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 37.15 0.36 -1.17 16 2 C -0.16 -1.79 5.61 -26.73 -0.15 -1.94 16 3 C 0.11 1.62 3.19 -26.73 -0.09 1.54 16 4 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 5 O -0.55 -7.87 9.81 -35.23 -0.35 -8.21 16 6 C 0.02 0.31 4.65 -3.82 -0.02 0.29 16 7 N -0.53 -11.22 4.60 -236.07 -1.09 -12.31 16 8 C 0.19 4.90 4.62 -4.97 -0.02 4.88 16 9 C -0.50 -14.13 8.46 -34.44 -0.29 -14.42 16 10 H 0.06 1.72 7.68 -52.49 -0.40 1.32 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 13 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.08 1.58 5.15 -3.82 -0.02 1.56 16 18 C -0.17 -3.04 4.19 -90.62 -0.38 -3.42 16 19 C -0.17 -3.01 10.06 -26.70 -0.27 -3.27 16 20 C -0.19 -2.82 10.25 -26.69 -0.27 -3.09 16 21 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.37 4.24 9.05 45.56 0.41 4.65 16 27 H 0.07 1.26 7.69 -51.93 -0.40 0.86 16 28 H 0.03 0.51 5.59 -51.93 -0.29 0.22 16 29 H 0.02 0.51 7.71 -51.93 -0.40 0.11 16 30 H 0.00 0.12 6.80 -51.93 -0.35 -0.23 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 1.63 5.34 -51.93 -0.28 1.35 16 33 H 0.07 1.62 7.02 -51.93 -0.36 1.25 16 34 H 0.09 1.65 5.91 -51.93 -0.31 1.34 16 35 H 0.10 1.88 8.03 -51.93 -0.42 1.46 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -29.82 302.09 -8.13 -37.95 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.72 Total: 4.82 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.24 Total: -17.58 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.35 Total: -38.45 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.35 Total: -8.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.82 -8.13 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610511705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.054 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds