Wall clock time and date at job start Sun Mar 29 2020 21:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 H 1.09003 * 109.46995 * 55.00238 * 3 2 1 5 5 O 1.42893 * 109.47462 * 294.99977 * 3 2 1 6 6 C 1.53001 * 109.47025 * 174.99842 * 3 2 1 7 7 N 1.46900 * 109.47152 * 184.80274 * 6 3 2 8 8 C 1.46904 * 111.00073 * 162.39652 * 7 6 3 9 9 C 1.50702 * 109.46945 * 195.79429 * 8 7 6 10 10 H 1.07999 * 120.00184 * 5.05391 * 9 8 7 11 11 C 1.37882 * 119.99639 * 185.05691 * 9 8 7 12 12 N 1.31513 * 120.00164 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47285 * 59.99636 * 13 11 9 15 15 H 1.48492 * 109.46928 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46577 * 299.99454 * 13 11 9 17 17 C 1.46897 * 111.00460 * 286.35146 * 7 6 3 18 18 C 1.53005 * 109.46998 * 300.55032 * 17 7 6 19 19 C 1.52995 * 117.49846 * 244.17306 * 18 17 7 20 20 C 1.53002 * 117.49717 * 175.51388 * 18 17 7 21 21 H 1.08995 * 109.47365 * 59.99710 * 1 2 3 22 22 H 1.09002 * 109.47494 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47050 * 299.99736 * 1 2 3 24 24 H 1.09006 * 109.47050 * 240.00264 * 2 1 3 25 25 H 1.09005 * 109.47371 * 120.00408 * 2 1 3 26 26 H 0.96698 * 114.00433 * 300.00197 * 5 3 2 27 27 H 1.08992 * 109.47776 * 304.80716 * 6 3 2 28 28 H 1.09004 * 109.47068 * 64.81048 * 6 3 2 29 29 H 1.08999 * 109.46870 * 315.79232 * 8 7 6 30 30 H 1.08993 * 109.46763 * 75.79520 * 8 7 6 31 31 H 0.96994 * 120.00133 * 180.02562 * 12 11 9 32 32 H 1.09006 * 109.47149 * 60.54645 * 17 7 6 33 33 H 1.08997 * 109.47722 * 180.54920 * 17 7 6 34 34 H 1.08996 * 115.54848 * 29.84404 * 18 17 7 35 35 H 1.09004 * 117.50019 * 0.02562 * 19 18 17 36 36 H 1.08995 * 117.50279 * 145.01957 * 19 18 17 37 37 H 1.08998 * 117.49888 * 214.97498 * 20 18 17 38 38 H 1.09000 * 117.50003 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4443 0.1258 7 7 4.0449 2.8278 0.2414 8 6 5.4138 2.8672 0.7732 9 6 5.7311 4.2645 1.2402 10 1 4.9648 5.0254 1.2270 11 6 6.9998 4.5713 1.6844 12 7 7.9328 3.6446 1.7010 13 14 7.3931 6.3031 2.2640 14 1 6.5171 6.6521 3.4112 15 1 8.8144 6.3723 2.6882 16 1 7.1601 7.2614 1.1537 17 6 3.9615 3.5237 -1.0495 18 6 4.8108 2.7827 -2.0842 19 6 6.0178 3.5208 -2.6666 20 6 4.7718 3.2930 -3.5262 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.0141 1.6543 -2.0138 27 1 3.8569 0.8829 1.0132 28 1 4.0028 0.9805 -0.7581 29 1 5.4978 2.1760 1.6118 30 1 6.1157 2.5772 -0.0086 31 1 8.8252 3.8604 2.0138 32 1 2.9237 3.5491 -1.3822 33 1 4.3321 4.5426 -0.9377 34 1 4.9033 1.7073 -1.9332 35 1 6.2072 4.5341 -2.3123 36 1 6.9043 2.9308 -2.8991 37 1 4.8392 2.5531 -4.3238 38 1 4.1409 4.1562 -3.7377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610511705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:22 Heat of formation + Delta-G solvation = -52.334256 kcal Electronic energy + Delta-G solvation = -16632.971142 eV Core-core repulsion = 14089.132552 eV Total energy + Delta-G solvation = -2543.838590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14578 -38.09776 -36.28121 -34.48371 -33.64761 -30.08975 -28.89210 -26.53774 -24.31953 -23.15353 -23.08859 -22.16875 -20.60621 -18.38141 -17.38740 -17.02552 -16.83042 -16.30087 -15.87901 -15.52094 -15.22581 -14.45502 -14.24530 -14.12758 -13.48610 -13.18731 -12.95790 -12.73266 -12.68228 -12.62514 -12.42761 -12.27290 -12.21641 -11.99215 -11.77651 -11.71504 -11.44105 -11.08514 -10.83937 -10.56936 -10.20490 -8.81002 -8.16445 -6.25376 1.38886 1.41582 1.49395 2.40738 2.98634 3.15259 3.34155 3.61718 3.89766 4.04930 4.10239 4.14629 4.25009 4.29872 4.42553 4.61040 4.70859 4.80786 4.81872 4.87804 4.97209 5.03657 5.08446 5.14619 5.16422 5.28940 5.32301 5.39078 5.42100 5.46881 5.55493 5.69970 6.14662 6.46313 6.74536 6.91657 6.95685 7.43540 8.93155 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.007694 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.868360 B = 3638.502557 C = 4261.173333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.148 4.148 3 C 0.125 3.875 4 H 0.084 0.916 5 O -0.560 6.560 6 C 0.018 3.982 7 N -0.539 5.539 8 C 0.207 3.793 9 C -0.516 4.516 10 H 0.053 0.947 11 C 0.005 3.995 12 N -0.933 5.933 13 Si 0.961 3.039 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.089 3.911 18 C -0.183 4.183 19 C -0.194 4.194 20 C -0.145 4.145 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.380 0.620 27 H 0.060 0.940 28 H 0.042 0.958 29 H -0.010 1.010 30 H -0.019 1.019 31 H 0.262 0.738 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -6.014 -8.360 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C 0.066 3.934 4 H 0.102 0.898 5 O -0.367 6.367 6 C -0.110 4.110 7 N -0.261 5.261 8 C 0.081 3.919 9 C -0.554 4.554 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.574 5.574 13 Si 0.786 3.214 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.195 1.195 17 C -0.039 4.039 18 C -0.203 4.203 19 C -0.232 4.232 20 C -0.182 4.182 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.228 0.772 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.008 0.992 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.418 -5.396 -7.541 14.709 hybrid contribution 1.838 -0.036 -0.159 1.845 sum -9.581 -5.431 -7.700 13.438 Atomic orbital electron populations 1.21651 0.94439 1.01878 1.02004 1.22142 0.97476 0.95748 1.03218 1.21822 0.91159 0.93164 0.87296 0.89753 1.86517 1.76798 1.57387 1.15992 1.22945 0.97170 0.90337 1.00576 1.62202 1.24110 1.14310 1.25466 1.19384 0.84443 0.95604 0.92471 1.21389 0.95590 0.96713 1.41717 0.92863 1.25799 0.96087 1.01274 0.96132 1.70067 1.03485 1.35106 1.48737 0.85571 0.77046 0.79893 0.78924 1.19520 1.20763 1.19536 1.21964 1.00247 0.95874 0.85766 1.22932 1.01738 0.99183 0.96408 1.22849 0.93063 1.01060 1.06202 1.22973 0.99194 1.03470 0.92556 0.92385 0.91674 0.93290 0.90656 0.91042 0.77177 0.92120 0.93958 0.99212 1.00122 0.92901 0.87205 0.94159 0.88807 0.91085 0.90062 0.87017 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.81 71.98 0.71 -1.94 16 2 C -0.15 -3.06 5.61 30.59 0.17 -2.89 16 3 C 0.13 3.44 3.19 30.59 0.10 3.54 16 4 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 5 O -0.56 -14.63 9.81 -148.98 -1.46 -16.10 16 6 C 0.02 0.63 4.65 86.30 0.40 1.03 16 7 N -0.54 -23.41 4.60 -900.79 -4.14 -27.56 16 8 C 0.21 11.18 4.62 85.56 0.39 11.57 16 9 C -0.52 -30.05 8.46 25.60 0.22 -29.83 16 10 H 0.05 3.11 7.68 -2.91 -0.02 3.09 16 11 C 0.00 0.28 5.46 84.66 0.46 0.74 16 12 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 13 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 C 0.09 3.47 5.15 86.31 0.44 3.92 16 18 C -0.18 -6.29 4.19 -10.79 -0.05 -6.33 16 19 C -0.19 -7.02 10.06 30.62 0.31 -6.71 16 20 C -0.14 -3.90 10.25 30.62 0.31 -3.58 16 21 H 0.06 1.10 7.82 -2.39 -0.02 1.08 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 24 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.38 7.57 9.05 -74.06 -0.67 6.90 16 27 H 0.06 2.19 7.69 -2.39 -0.02 2.17 16 28 H 0.04 1.36 5.59 -2.38 -0.01 1.35 16 29 H -0.01 -0.60 7.71 -2.39 -0.02 -0.62 16 30 H -0.02 -1.10 6.80 -2.39 -0.02 -1.11 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.11 3.82 5.34 -2.38 -0.01 3.80 16 33 H 0.04 1.81 7.02 -2.39 -0.02 1.80 16 34 H 0.09 3.22 5.91 -2.39 -0.01 3.21 16 35 H 0.07 2.89 8.03 -2.38 -0.02 2.87 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.51 302.09 0.53 -64.98 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.35 Total: 18.33 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 3.47 Total: -30.50 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.86 Total: -84.28 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.46 Total: -16.10 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.51 0.53 -64.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610511705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.648 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds