Wall clock time and date at job start Sun Mar 29 2020 21:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 O 1.42902 * 109.47535 * 239.99704 * 2 1 3 5 5 C 1.53003 * 109.46941 * 119.99674 * 2 1 3 6 6 H 1.09001 * 110.59584 * 68.86252 * 5 2 1 7 7 C 1.54935 * 110.66651 * 305.85709 * 5 2 1 8 8 C 1.54602 * 102.92208 * 204.15322 * 7 5 2 9 9 C 1.53989 * 105.13706 * 21.95626 * 8 7 5 10 10 N 1.47897 * 107.06356 * 1.22873 * 9 8 7 11 11 C 1.46898 * 111.00160 * 214.15678 * 10 9 8 12 12 C 1.52997 * 109.47043 * 286.27822 * 11 10 9 13 13 C 1.50704 * 109.47125 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99779 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00211 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47372 * 59.99663 * 17 15 13 19 19 H 1.48508 * 109.47340 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47231 * 299.99948 * 17 15 13 21 21 H 1.08999 * 109.47334 * 306.65213 * 1 2 3 22 22 H 1.08998 * 109.46736 * 66.65597 * 1 2 3 23 23 H 1.09007 * 109.46906 * 186.65223 * 1 2 3 24 24 H 1.08993 * 109.47282 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46798 * 299.99979 * 3 2 1 26 26 H 1.09000 * 109.46875 * 59.99413 * 3 2 1 27 27 H 0.96693 * 113.99910 * 59.99807 * 4 2 1 28 28 H 1.08995 * 110.72827 * 322.50861 * 7 5 2 29 29 H 1.08999 * 110.72396 * 85.79563 * 7 5 2 30 30 H 1.09002 * 110.31054 * 140.87707 * 8 7 5 31 31 H 1.09007 * 110.30592 * 263.04464 * 8 7 5 32 32 H 1.09004 * 109.91455 * 241.87020 * 9 8 7 33 33 H 1.09001 * 110.07791 * 120.67559 * 9 8 7 34 34 H 1.09004 * 109.47327 * 46.28373 * 11 10 9 35 35 H 1.09001 * 109.46818 * 166.28211 * 11 10 9 36 36 H 1.08994 * 109.47288 * 300.00478 * 12 11 10 37 37 H 1.09007 * 109.46795 * 60.00112 * 12 11 10 38 38 H 0.96997 * 119.99746 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.8209 -1.7875 1.1928 7 6 1.4216 -0.1029 2.5283 8 6 2.4516 -0.4685 3.6218 9 6 3.7670 -0.7283 2.8645 10 7 3.4962 -0.4905 1.4301 11 6 4.2821 -1.4019 0.5878 12 6 5.7465 -0.9590 0.5855 13 6 6.5529 -1.8944 -0.2781 14 1 6.0692 -2.7217 -0.7759 15 6 7.9083 -1.6939 -0.4327 16 7 8.4972 -0.6860 0.1731 17 14 8.9077 -2.8529 -1.5037 18 1 8.3800 -2.8233 -2.8916 19 1 10.3292 -2.4230 -1.5059 20 1 8.8084 -4.2335 -0.9658 21 1 -0.3634 0.6135 0.8244 22 1 -0.3633 0.4072 -0.9435 23 1 -0.3633 -1.0208 0.1191 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.7211 -0.2703 -1.9979 28 1 1.3319 0.9788 2.4293 29 1 0.4529 -0.5532 2.7449 30 1 2.5737 0.3605 4.3189 31 1 2.1368 -1.3671 4.1527 32 1 4.0853 -1.7597 3.0163 33 1 4.5413 -0.0456 3.2144 34 1 4.2095 -2.4153 0.9828 35 1 3.8944 -1.3804 -0.4307 36 1 5.8190 0.0543 0.1905 37 1 6.1342 -0.9804 1.6041 38 1 9.4507 -0.5447 0.0641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610999018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:25 Heat of formation + Delta-G solvation = -61.546551 kcal Electronic energy + Delta-G solvation = -16812.843726 eV Core-core repulsion = 14268.605660 eV Total energy + Delta-G solvation = -2544.238065 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.46570 -36.64421 -33.67160 -32.21927 -31.45058 -28.47371 -27.56094 -27.07810 -24.27021 -22.39067 -21.27951 -19.54324 -18.91336 -16.33637 -16.27816 -16.02212 -15.06987 -14.44327 -14.20031 -13.89720 -13.30777 -13.08620 -13.00435 -12.37858 -12.13536 -11.83344 -11.61496 -11.44633 -11.43548 -11.26680 -10.96998 -10.85933 -10.71147 -10.54923 -10.44730 -10.11525 -9.80813 -9.50405 -9.12469 -9.01715 -8.23501 -7.67849 -5.90178 -3.91540 3.39252 3.42824 3.46020 4.31946 4.43882 4.57827 4.91164 5.08835 5.14532 5.22803 5.30270 5.38462 5.45485 5.60425 5.70032 5.73967 5.87245 5.95842 6.00162 6.02469 6.17441 6.20706 6.33347 6.38898 6.42634 6.62262 6.74169 6.80505 7.25191 7.58645 7.64710 7.89103 7.97794 8.07591 8.21268 8.56851 9.16127 9.71222 11.21358 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.007003 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.298107 B = 3997.511700 C = 4459.130790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.141 3.859 3 C -0.166 4.166 4 O -0.551 6.551 5 C 0.076 3.924 6 H 0.051 0.949 7 C -0.116 4.116 8 C -0.130 4.130 9 C 0.038 3.962 10 N -0.504 5.504 11 C 0.051 3.949 12 C 0.033 3.967 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.368 0.632 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.014 0.986 35 H 0.083 0.917 36 H 0.021 0.979 37 H 0.011 0.989 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 2.800 2.910 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.100 3.900 3 C -0.224 4.224 4 O -0.357 6.357 5 C -0.033 4.033 6 H 0.069 0.931 7 C -0.154 4.154 8 C -0.169 4.169 9 C -0.091 4.091 10 N -0.228 5.228 11 C -0.076 4.076 12 C -0.004 4.004 13 C -0.556 4.556 14 H 0.071 0.929 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.215 0.785 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.566 3.017 3.236 16.182 hybrid contribution 0.202 -1.139 -0.745 1.376 sum -15.364 1.878 2.491 15.677 Atomic orbital electron populations 1.22515 0.96528 1.02229 1.02086 1.21034 0.91003 0.92229 0.85731 1.22347 1.04597 0.94928 1.00500 1.86651 1.77018 1.56706 1.15315 1.22608 0.90670 0.97454 0.92537 0.93123 1.22550 0.97593 1.01345 0.93946 1.22418 0.95523 1.01113 0.97809 1.22814 0.96765 1.00295 0.89179 1.64782 1.02187 1.51830 1.04043 1.22636 0.96681 0.91301 0.96970 1.18997 0.87837 0.96886 0.96690 1.21202 0.93036 1.12330 1.29067 0.92936 1.24986 0.97902 0.95470 0.95998 1.69973 1.10494 1.29498 1.43551 0.86684 0.79055 0.81243 0.81140 1.20263 1.21340 1.20374 0.91693 0.92521 0.92324 0.89569 0.93830 0.92298 0.78478 0.90525 0.91627 0.91332 0.92050 0.93985 0.90422 0.96768 0.89845 0.96016 0.97085 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.36 37.16 0.31 -1.57 16 2 C 0.14 1.98 1.00 -90.62 -0.09 1.89 16 3 C -0.17 -2.31 8.35 37.16 0.31 -2.00 16 4 O -0.55 -8.65 10.80 -35.23 -0.38 -9.04 16 5 C 0.08 1.20 1.98 -65.78 -0.13 1.07 16 6 H 0.05 0.86 8.02 -51.93 -0.42 0.45 16 7 C -0.12 -1.46 5.11 -24.87 -0.13 -1.59 16 8 C -0.13 -1.72 6.93 -25.37 -0.18 -1.90 16 9 C 0.04 0.66 5.98 -2.76 -0.02 0.64 16 10 N -0.50 -9.62 3.76 -222.63 -0.84 -10.45 16 11 C 0.05 1.17 4.68 -3.83 -0.02 1.15 16 12 C 0.03 0.92 5.08 -27.88 -0.14 0.78 16 13 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -27.81 13.29 55.43 0.74 -27.08 16 17 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.51 7.39 -51.93 -0.38 1.13 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 6.41 -51.93 -0.33 0.41 16 27 H 0.37 4.24 9.04 45.56 0.41 4.65 16 28 H 0.08 0.92 6.23 -51.93 -0.32 0.59 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.77 7.50 -51.93 -0.39 0.38 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.01 0.33 7.70 -51.93 -0.40 -0.07 16 35 H 0.08 1.98 5.83 -51.93 -0.30 1.67 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.01 0.31 7.66 -51.92 -0.40 -0.08 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -32.25 295.08 -7.38 -39.63 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.84 Total: 0.74 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.49 Total: -15.63 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.10 Total: -37.53 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.38 Total: -9.04 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.25 -7.38 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610999018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.912 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds