Wall clock time and date at job start Sun Mar 29 2020 21:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 O 1.42902 * 109.47535 * 239.99704 * 2 1 3 5 5 C 1.53003 * 109.46941 * 119.99674 * 2 1 3 6 6 H 1.09001 * 110.59584 * 68.86252 * 5 2 1 7 7 C 1.54935 * 110.66651 * 305.85709 * 5 2 1 8 8 C 1.54602 * 102.92208 * 204.15322 * 7 5 2 9 9 C 1.53989 * 105.13706 * 21.95626 * 8 7 5 10 10 N 1.47897 * 107.06356 * 1.22873 * 9 8 7 11 11 C 1.46898 * 111.00160 * 214.15678 * 10 9 8 12 12 C 1.52997 * 109.47043 * 286.27822 * 11 10 9 13 13 C 1.50704 * 109.47125 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99779 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00211 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47372 * 59.99663 * 17 15 13 19 19 H 1.48508 * 109.47340 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47231 * 299.99948 * 17 15 13 21 21 H 1.08999 * 109.47334 * 306.65213 * 1 2 3 22 22 H 1.08998 * 109.46736 * 66.65597 * 1 2 3 23 23 H 1.09007 * 109.46906 * 186.65223 * 1 2 3 24 24 H 1.08993 * 109.47282 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46798 * 299.99979 * 3 2 1 26 26 H 1.09000 * 109.46875 * 59.99413 * 3 2 1 27 27 H 0.96693 * 113.99910 * 59.99807 * 4 2 1 28 28 H 1.08995 * 110.72827 * 322.50861 * 7 5 2 29 29 H 1.08999 * 110.72396 * 85.79563 * 7 5 2 30 30 H 1.09002 * 110.31054 * 140.87707 * 8 7 5 31 31 H 1.09007 * 110.30592 * 263.04464 * 8 7 5 32 32 H 1.09004 * 109.91455 * 241.87020 * 9 8 7 33 33 H 1.09001 * 110.07791 * 120.67559 * 9 8 7 34 34 H 1.09004 * 109.47327 * 46.28373 * 11 10 9 35 35 H 1.09001 * 109.46818 * 166.28211 * 11 10 9 36 36 H 1.08994 * 109.47288 * 300.00478 * 12 11 10 37 37 H 1.09007 * 109.46795 * 60.00112 * 12 11 10 38 38 H 0.96997 * 119.99746 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.8209 -1.7875 1.1928 7 6 1.4216 -0.1029 2.5283 8 6 2.4516 -0.4685 3.6218 9 6 3.7670 -0.7283 2.8645 10 7 3.4962 -0.4905 1.4301 11 6 4.2821 -1.4019 0.5878 12 6 5.7465 -0.9590 0.5855 13 6 6.5529 -1.8944 -0.2781 14 1 6.0692 -2.7217 -0.7759 15 6 7.9083 -1.6939 -0.4327 16 7 8.4972 -0.6860 0.1731 17 14 8.9077 -2.8529 -1.5037 18 1 8.3800 -2.8233 -2.8916 19 1 10.3292 -2.4230 -1.5059 20 1 8.8084 -4.2335 -0.9658 21 1 -0.3634 0.6135 0.8244 22 1 -0.3633 0.4072 -0.9435 23 1 -0.3633 -1.0208 0.1191 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.7211 -0.2703 -1.9979 28 1 1.3319 0.9788 2.4293 29 1 0.4529 -0.5532 2.7449 30 1 2.5737 0.3605 4.3189 31 1 2.1368 -1.3671 4.1527 32 1 4.0853 -1.7597 3.0163 33 1 4.5413 -0.0456 3.2144 34 1 4.2095 -2.4153 0.9828 35 1 3.8944 -1.3804 -0.4307 36 1 5.8190 0.0543 0.1905 37 1 6.1342 -0.9804 1.6041 38 1 9.4507 -0.5447 0.0641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610999018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:25 Heat of formation + Delta-G solvation = -84.742887 kcal Electronic energy + Delta-G solvation = -16813.849594 eV Core-core repulsion = 14268.605660 eV Total energy + Delta-G solvation = -2545.243934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73170 -37.89167 -35.67545 -33.88000 -32.83591 -30.33292 -28.78780 -28.06090 -26.29645 -23.68422 -22.93446 -21.15348 -20.13693 -18.51951 -17.49284 -17.21742 -16.54680 -16.50454 -15.45933 -15.24079 -14.84543 -14.49961 -14.28162 -14.07612 -13.47275 -13.27576 -13.08025 -12.91996 -12.77360 -12.59057 -12.51328 -12.41247 -12.33846 -11.98674 -11.76584 -11.55756 -11.43536 -11.22666 -11.05896 -10.71760 -10.53534 -9.23937 -8.21030 -6.32932 1.37073 1.41455 1.49482 2.39225 3.11280 3.12083 3.28225 3.75940 3.94649 4.06288 4.15978 4.16759 4.28800 4.48746 4.52412 4.63225 4.73051 4.80731 4.89863 4.91659 4.96118 5.01829 5.06709 5.13505 5.14636 5.28984 5.32973 5.39535 5.44608 5.62349 5.66509 5.81571 6.10886 6.23037 6.35715 6.83479 7.03005 7.35801 8.91151 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.007003 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.298107 B = 3997.511700 C = 4459.130790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.161 4.161 4 O -0.581 6.581 5 C 0.069 3.931 6 H 0.036 0.964 7 C -0.106 4.106 8 C -0.121 4.121 9 C 0.030 3.970 10 N -0.515 5.515 11 C 0.073 3.927 12 C 0.046 3.954 13 C -0.547 4.547 14 H 0.054 0.946 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.267 1.267 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.384 0.616 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.003 0.997 35 H 0.076 0.924 36 H -0.011 1.011 37 H -0.016 1.016 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.109 2.610 2.775 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.095 3.905 3 C -0.218 4.218 4 O -0.389 6.389 5 C -0.040 4.040 6 H 0.054 0.946 7 C -0.143 4.143 8 C -0.159 4.159 9 C -0.098 4.098 10 N -0.239 5.239 11 C -0.055 4.055 12 C 0.009 3.991 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.192 1.192 21 H 0.102 0.898 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.233 0.767 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.022 0.978 35 H 0.094 0.906 36 H 0.007 0.993 37 H 0.003 0.997 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.519 2.836 3.100 18.016 hybrid contribution 0.819 -1.036 -0.689 1.490 sum -16.700 1.799 2.411 16.969 Atomic orbital electron populations 1.22407 0.93171 1.02822 1.03887 1.21191 0.93379 0.91482 0.84430 1.22274 1.01631 0.95568 1.02337 1.86595 1.77926 1.57695 1.16722 1.22843 0.88282 0.97397 0.95468 0.94562 1.22580 0.98384 1.02050 0.91312 1.22394 0.92854 1.02745 0.97890 1.22872 0.99181 0.98722 0.89049 1.64686 1.04353 1.50468 1.04348 1.22175 0.94475 0.91269 0.97532 1.18785 0.90928 0.94916 0.94482 1.21592 0.94086 1.12953 1.29906 0.92731 1.25985 0.99098 0.97240 0.97281 1.70113 1.11091 1.31237 1.44733 0.85471 0.77272 0.78908 0.79200 1.19106 1.20352 1.19200 0.89774 0.90846 0.92352 0.94026 0.91803 0.90675 0.76661 0.89369 0.88417 0.89421 0.90344 0.95799 0.92287 0.97844 0.90588 0.99304 0.99732 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.36 71.98 0.60 -2.37 16 2 C 0.14 3.61 1.00 -10.79 -0.01 3.59 16 3 C -0.16 -4.28 8.35 71.98 0.60 -3.68 16 4 O -0.58 -18.08 10.80 -148.98 -1.61 -19.69 16 5 C 0.07 2.09 1.98 45.26 0.09 2.18 16 6 H 0.04 1.21 8.02 -2.39 -0.02 1.19 16 7 C -0.11 -2.33 5.11 31.80 0.16 -2.16 16 8 C -0.12 -2.94 6.93 31.47 0.22 -2.73 16 9 C 0.03 1.07 5.98 86.45 0.52 1.59 16 10 N -0.51 -20.25 3.76 -858.26 -3.22 -23.48 16 11 C 0.07 3.54 4.68 86.30 0.40 3.95 16 12 C 0.05 2.71 5.08 29.85 0.15 2.86 16 13 C -0.55 -33.64 9.11 25.60 0.23 -33.41 16 14 H 0.05 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -59.42 13.29 21.45 0.28 -59.14 16 17 Si 0.97 46.33 29.54 68.60 2.03 48.35 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H 0.08 1.21 7.38 -2.39 -0.02 1.19 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 24 H 0.04 1.48 7.39 -2.39 -0.02 1.46 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.72 6.41 -2.39 -0.02 1.70 16 27 H 0.38 8.58 9.04 -74.06 -0.67 7.91 16 28 H 0.09 1.77 6.23 -2.39 -0.01 1.76 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.02 0.92 7.50 -2.39 -0.02 0.90 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.00 0.17 7.70 -2.39 -0.02 0.15 16 35 H 0.08 3.76 5.83 -2.39 -0.01 3.75 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H -0.02 -0.98 7.66 -2.38 -0.02 -1.00 16 38 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -72.74 295.08 1.26 -71.49 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.35 Total: 12.07 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.43 Total: -29.60 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.94 Total: -82.61 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.61 Total: -19.69 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -72.74 1.26 -71.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610999018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.257 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds