Wall clock time and date at job start Sun Mar 29 2020 21:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 C 1.53006 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50980 * 54.90938 * 4 3 2 6 6 C 1.53101 * 109.50684 * 175.00183 * 4 3 2 7 7 N 1.47011 * 109.25841 * 176.78009 * 6 4 3 8 8 C 1.46896 * 110.99920 * 177.60388 * 7 6 4 9 9 C 1.52998 * 109.47029 * 170.00184 * 8 7 6 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.47014 * 110.75213 * 301.38317 * 7 6 4 19 19 C 1.53098 * 109.25943 * 58.61549 * 18 7 6 20 20 O 1.43014 * 109.25766 * 303.15078 * 19 18 7 21 21 H 1.08998 * 109.46609 * 300.00224 * 1 2 3 22 22 H 1.08994 * 109.46961 * 59.99848 * 1 2 3 23 23 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47313 * 240.00030 * 2 1 3 25 25 H 1.09001 * 109.47343 * 120.00222 * 2 1 3 26 26 H 1.08998 * 109.47625 * 60.00398 * 3 2 1 27 27 H 1.09000 * 109.47211 * 299.99489 * 3 2 1 28 28 H 1.08998 * 109.50647 * 56.84468 * 6 4 3 29 29 H 1.08998 * 109.50402 * 296.71578 * 6 4 3 30 30 H 1.09000 * 109.47274 * 50.00315 * 8 7 6 31 31 H 1.09002 * 109.47154 * 289.99822 * 8 7 6 32 32 H 1.09001 * 109.47671 * 60.00253 * 9 8 7 33 33 H 1.09006 * 109.47297 * 299.99972 * 9 8 7 34 34 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 35 35 H 1.09009 * 109.50178 * 178.55087 * 18 7 6 36 36 H 1.08996 * 109.50781 * 298.67858 * 18 7 6 37 37 H 1.08992 * 109.50285 * 183.21373 * 19 18 7 38 38 H 1.09002 * 109.54098 * 63.10845 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8520 -0.8416 6 6 4.0813 2.8802 -0.1264 7 7 5.5493 2.8813 -0.0488 8 6 6.0846 4.2382 -0.2225 9 6 7.5781 4.2436 0.1093 10 6 8.1272 5.6358 -0.0682 11 1 7.4760 6.4366 -0.3863 12 6 9.4607 5.8872 0.1755 13 7 10.2538 4.9119 0.5624 14 14 10.1414 7.6127 -0.0452 15 1 11.5908 7.6182 0.2782 16 1 9.9459 8.0457 -1.4521 17 1 9.4285 8.5460 0.8636 18 6 6.0044 2.2936 1.2196 19 6 5.4740 0.8619 1.3318 20 8 4.0480 0.8773 1.2231 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.6735 3.4837 0.6845 29 1 3.7670 3.2957 -1.0838 30 1 5.5617 4.9232 0.4449 31 1 5.9407 4.5562 -1.2551 32 1 8.1012 3.5586 -0.5581 33 1 7.7221 3.9255 1.1420 34 1 9.9004 4.0159 0.6766 35 1 7.0942 2.2811 1.2445 36 1 5.6275 2.8878 2.0520 37 1 5.7610 0.4420 2.2958 38 1 5.8936 0.2537 0.5305 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611155160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:56 Heat of formation + Delta-G solvation = -69.052755 kcal Electronic energy + Delta-G solvation = -16137.597206 eV Core-core repulsion = 13593.033647 eV Total energy + Delta-G solvation = -2544.563559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53291 -36.14715 -34.88771 -33.26403 -31.24796 -29.72993 -27.71057 -25.45787 -23.51436 -23.15333 -21.32376 -20.64579 -19.75727 -16.91591 -16.37929 -15.96506 -14.98613 -14.73187 -14.56010 -14.49458 -13.82495 -13.68692 -13.27566 -13.02352 -12.54442 -12.24014 -12.13190 -11.64547 -11.47307 -11.29893 -10.98210 -10.96765 -10.86122 -10.74483 -10.30006 -10.19062 -10.08870 -9.73908 -9.27437 -8.60816 -8.34095 -7.88850 -6.38592 -4.07530 3.42957 3.45003 3.63763 3.86352 4.21069 4.55072 4.73176 4.91566 4.99209 5.19965 5.26822 5.33607 5.39179 5.40371 5.48319 5.53491 5.68654 5.70334 5.76044 5.78110 5.93001 6.02499 6.06515 6.16645 6.17977 6.26189 6.30243 6.32696 6.72758 7.19786 7.30275 7.35939 7.53956 7.62418 8.20320 8.43265 8.85976 9.64572 11.02401 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.065273 B = 0.004717 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.867040 B = 5934.391510 C = 6257.345092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.094 3.906 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.540 5.540 8 C 0.069 3.931 9 C 0.008 3.992 10 C -0.604 4.604 11 H 0.048 0.952 12 C 0.016 3.984 13 N -0.911 5.911 14 Si 1.070 2.930 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.288 1.288 18 C 0.016 3.984 19 C 0.065 3.935 20 O -0.385 6.385 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.016 0.984 33 H 0.011 0.989 34 H 0.268 0.732 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 -8.436 -0.473 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.149 4.149 4 C 0.036 3.964 5 H 0.082 0.918 6 C -0.105 4.105 7 N -0.265 5.265 8 C -0.057 4.057 9 C -0.029 4.029 10 C -0.642 4.642 11 H 0.066 0.934 12 C -0.188 4.188 13 N -0.547 5.547 14 Si 0.898 3.102 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.113 4.113 19 C -0.012 4.012 20 O -0.304 6.304 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.976 -7.882 -0.603 16.057 hybrid contribution -1.510 -0.170 0.322 1.553 sum -15.486 -8.052 -0.281 17.456 Atomic orbital electron populations 1.21781 0.96103 1.01408 1.01640 1.21463 0.95339 0.96576 1.02481 1.21618 0.92888 0.97705 1.02657 1.22171 0.93847 0.92982 0.87380 0.91820 1.22762 0.89484 0.96839 1.01463 1.62365 1.07185 1.23662 1.33285 1.22203 0.98125 0.85330 1.00086 1.19357 0.89683 0.97850 0.95992 1.21996 0.97071 0.94541 1.50641 0.93379 1.25853 0.93707 1.05422 0.93835 1.70787 1.38267 1.02273 1.43421 0.83533 0.76220 0.74040 0.76416 1.20716 1.21391 1.21489 1.22833 1.02371 0.95116 0.90950 1.22686 0.80579 0.96089 1.01820 1.87913 1.21386 1.82244 1.38865 0.92820 0.92910 0.92909 0.92216 0.91249 0.91275 0.90651 0.94544 0.90264 0.95928 0.91625 0.96582 0.97115 0.92116 0.88508 0.94517 0.88812 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.21 5.83 -26.73 -0.16 -1.36 16 3 C -0.11 -1.22 4.93 -26.73 -0.13 -1.35 16 4 C 0.09 1.30 2.80 -26.68 -0.07 1.23 16 5 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.02 0.37 4.91 -3.71 -0.02 0.35 16 7 N -0.54 -10.20 4.88 -234.31 -1.14 -11.35 16 8 C 0.07 1.51 5.22 -3.83 -0.02 1.49 16 9 C 0.01 0.22 3.55 -27.88 -0.10 0.12 16 10 C -0.60 -17.45 9.11 -34.44 -0.31 -17.77 16 11 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 12 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 13 N -0.91 -28.10 13.65 55.43 0.76 -27.35 16 14 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.02 0.28 4.94 -3.71 -0.02 0.26 16 19 C 0.07 0.97 7.01 37.21 0.26 1.23 16 20 O -0.38 -5.86 10.02 -35.23 -0.35 -6.21 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 33 H 0.01 0.29 6.14 -51.93 -0.32 -0.03 16 34 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 35 H 0.10 1.88 6.05 -51.92 -0.31 1.56 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -30.94 300.36 -8.46 -39.40 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.87 Total: -3.08 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.30 Total: -16.34 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.39 Total: -38.69 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.94 -8.46 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611155160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.649 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds