Wall clock time and date at job start Sun Mar 29 2020 21:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 C 1.53006 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50980 * 54.90938 * 4 3 2 6 6 C 1.53101 * 109.50684 * 175.00183 * 4 3 2 7 7 N 1.47011 * 109.25841 * 176.78009 * 6 4 3 8 8 C 1.46896 * 110.99920 * 177.60388 * 7 6 4 9 9 C 1.52998 * 109.47029 * 170.00184 * 8 7 6 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.47014 * 110.75213 * 301.38317 * 7 6 4 19 19 C 1.53098 * 109.25943 * 58.61549 * 18 7 6 20 20 O 1.43014 * 109.25766 * 303.15078 * 19 18 7 21 21 H 1.08998 * 109.46609 * 300.00224 * 1 2 3 22 22 H 1.08994 * 109.46961 * 59.99848 * 1 2 3 23 23 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47313 * 240.00030 * 2 1 3 25 25 H 1.09001 * 109.47343 * 120.00222 * 2 1 3 26 26 H 1.08998 * 109.47625 * 60.00398 * 3 2 1 27 27 H 1.09000 * 109.47211 * 299.99489 * 3 2 1 28 28 H 1.08998 * 109.50647 * 56.84468 * 6 4 3 29 29 H 1.08998 * 109.50402 * 296.71578 * 6 4 3 30 30 H 1.09000 * 109.47274 * 50.00315 * 8 7 6 31 31 H 1.09002 * 109.47154 * 289.99822 * 8 7 6 32 32 H 1.09001 * 109.47671 * 60.00253 * 9 8 7 33 33 H 1.09006 * 109.47297 * 299.99972 * 9 8 7 34 34 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 35 35 H 1.09009 * 109.50178 * 178.55087 * 18 7 6 36 36 H 1.08996 * 109.50781 * 298.67858 * 18 7 6 37 37 H 1.08992 * 109.50285 * 183.21373 * 19 18 7 38 38 H 1.09002 * 109.54098 * 63.10845 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8520 -0.8416 6 6 4.0813 2.8802 -0.1264 7 7 5.5493 2.8813 -0.0488 8 6 6.0846 4.2382 -0.2225 9 6 7.5781 4.2436 0.1093 10 6 8.1272 5.6358 -0.0682 11 1 7.4760 6.4366 -0.3863 12 6 9.4607 5.8872 0.1755 13 7 10.2538 4.9119 0.5624 14 14 10.1414 7.6127 -0.0452 15 1 11.5908 7.6182 0.2782 16 1 9.9459 8.0457 -1.4521 17 1 9.4285 8.5460 0.8636 18 6 6.0044 2.2936 1.2196 19 6 5.4740 0.8619 1.3318 20 8 4.0480 0.8773 1.2231 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.6735 3.4837 0.6845 29 1 3.7670 3.2957 -1.0838 30 1 5.5617 4.9232 0.4449 31 1 5.9407 4.5562 -1.2551 32 1 8.1012 3.5586 -0.5581 33 1 7.7221 3.9255 1.1420 34 1 9.9004 4.0159 0.6766 35 1 7.0942 2.2811 1.2445 36 1 5.6275 2.8878 2.0520 37 1 5.7610 0.4420 2.2958 38 1 5.8936 0.2537 0.5305 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611155160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:55 Heat of formation + Delta-G solvation = -89.166076 kcal Electronic energy + Delta-G solvation = -16138.469385 eV Core-core repulsion = 13593.033647 eV Total energy + Delta-G solvation = -2545.435738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83046 -37.64411 -35.86193 -35.33078 -32.38983 -31.55282 -28.99454 -26.96780 -25.21504 -24.60602 -22.57365 -21.81687 -21.24462 -19.02083 -17.54475 -17.39276 -16.29477 -16.10444 -15.93836 -15.62305 -15.46896 -15.41487 -14.62408 -14.28536 -13.99409 -13.67895 -13.47405 -13.05783 -12.85133 -12.73098 -12.41971 -12.21747 -12.07246 -11.95132 -11.89814 -11.71829 -11.50977 -11.28434 -10.78210 -10.59795 -10.55840 -9.44407 -8.73267 -6.43962 1.51347 1.59913 1.79519 2.52875 2.69868 2.84727 3.12374 3.65758 3.90648 3.97922 4.05377 4.10482 4.22467 4.25996 4.26887 4.39084 4.51584 4.54196 4.64663 4.69944 4.77327 4.79287 4.83249 4.93210 4.97087 5.08816 5.16498 5.27714 5.34229 5.37328 5.49567 5.75713 5.98940 6.04264 6.13456 6.16918 6.53036 7.38131 8.67968 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.065273 B = 0.004717 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.867040 B = 5934.391510 C = 6257.345092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.105 4.105 4 C 0.095 3.905 5 H 0.066 0.934 6 C 0.022 3.978 7 N -0.547 5.547 8 C 0.084 3.916 9 C 0.015 3.985 10 C -0.624 4.624 11 H 0.051 0.949 12 C -0.037 4.037 13 N -0.935 5.935 14 Si 1.120 2.880 15 H -0.282 1.282 16 H -0.268 1.268 17 H -0.269 1.269 18 C 0.016 3.984 19 C 0.073 3.927 20 O -0.390 6.390 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.018 0.982 31 H 0.067 0.933 32 H -0.008 1.008 33 H -0.003 1.003 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.117 0.883 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 -8.173 -0.993 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.143 4.143 4 C 0.037 3.963 5 H 0.084 0.916 6 C -0.106 4.106 7 N -0.272 5.272 8 C -0.044 4.044 9 C -0.022 4.022 10 C -0.662 4.662 11 H 0.069 0.931 12 C -0.235 4.235 13 N -0.572 5.572 14 Si 0.940 3.060 15 H -0.207 1.207 16 H -0.193 1.193 17 H -0.194 1.194 18 C -0.112 4.112 19 C -0.004 4.004 20 O -0.309 6.309 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.011 0.989 33 H 0.015 0.985 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.134 0.866 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.488 -7.643 -1.126 17.308 hybrid contribution -1.080 -0.298 0.484 1.220 sum -16.568 -7.940 -0.642 18.384 Atomic orbital electron populations 1.21756 0.94716 1.02123 1.02068 1.21432 0.96524 0.95598 1.02064 1.21629 0.90579 0.98716 1.03388 1.22311 0.95648 0.91352 0.86957 0.91636 1.22907 0.87077 0.98495 1.02093 1.62336 1.09457 1.21532 1.33830 1.21891 0.95357 0.87229 0.99901 1.19215 0.92354 0.96087 0.94562 1.22438 0.97614 0.95789 1.50355 0.93092 1.27481 0.94505 1.08760 0.92713 1.70919 1.38724 1.02237 1.45276 0.82911 0.75626 0.69621 0.77828 1.20750 1.19257 1.19431 1.22821 1.01113 0.97110 0.90184 1.22680 0.80584 0.93798 1.03360 1.87925 1.21189 1.82174 1.39652 0.92837 0.92043 0.92114 0.91810 0.92526 0.91600 0.88846 0.94995 0.88784 0.96355 0.91432 0.98942 0.98456 0.93525 0.90792 0.95582 0.86553 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.40 16 2 C -0.12 -2.10 5.83 30.60 0.18 -1.92 16 3 C -0.11 -2.08 4.93 30.60 0.15 -1.93 16 4 C 0.10 2.46 2.80 30.63 0.09 2.55 16 5 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 6 C 0.02 0.67 4.91 86.32 0.42 1.10 16 7 N -0.55 -20.57 4.88 -895.22 -4.36 -24.93 16 8 C 0.08 3.68 5.22 86.30 0.45 4.13 16 9 C 0.02 0.81 3.55 29.85 0.11 0.91 16 10 C -0.62 -36.41 9.11 25.60 0.23 -36.18 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C -0.04 -2.18 5.46 84.65 0.46 -1.71 16 13 N -0.93 -58.67 13.65 21.45 0.29 -58.38 16 14 Si 1.12 50.59 29.90 68.60 2.05 52.64 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 C 0.02 0.58 4.94 86.31 0.43 1.01 16 19 C 0.07 2.10 7.01 72.02 0.50 2.60 16 20 O -0.39 -11.28 10.02 -148.98 -1.49 -12.77 16 21 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.15 7.83 -2.39 -0.02 1.13 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 32 H -0.01 -0.45 8.01 -2.39 -0.02 -0.47 16 33 H 0.00 -0.15 6.14 -2.38 -0.01 -0.17 16 34 H 0.26 16.23 7.22 -92.71 -0.67 15.56 16 35 H 0.07 3.00 6.05 -2.38 -0.01 2.98 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -66.23 300.36 1.31 -64.91 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.09 Total: 9.38 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 3.73 Total: -30.85 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.07 Total: -83.31 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.49 Total: -12.77 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -66.23 1.31 -64.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611155160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.252 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds