Wall clock time and date at job start Sun Mar 29 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09000 * 109.50468 * 60.08418 * 4 2 1 6 6 C 1.53096 * 109.51209 * 180.21848 * 4 2 1 7 7 N 1.47015 * 109.26007 * 176.78772 * 6 4 2 8 8 C 1.46896 * 110.99897 * 177.60722 * 7 6 4 9 9 C 1.53004 * 109.47172 * 189.67813 * 8 7 6 10 10 C 1.50695 * 109.47061 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00146 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00196 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00392 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46903 * 60.00635 * 14 12 10 16 16 H 1.48499 * 109.47244 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47347 * 300.00529 * 14 12 10 18 18 C 1.47010 * 110.74924 * 301.38105 * 7 6 4 19 19 C 1.53103 * 109.25904 * 58.61925 * 18 7 6 20 20 O 1.43010 * 109.25607 * 303.14815 * 19 18 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.50254 * 296.72484 * 6 4 2 29 29 H 1.08996 * 109.50596 * 56.84990 * 6 4 2 30 30 H 1.09003 * 109.47417 * 309.68285 * 8 7 6 31 31 H 1.09000 * 109.47251 * 69.67838 * 8 7 6 32 32 H 1.08993 * 109.46802 * 300.00013 * 9 8 7 33 33 H 1.09000 * 109.47012 * 59.99879 * 9 8 7 34 34 H 0.96999 * 120.00199 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.51257 * 298.68111 * 18 7 6 36 36 H 1.09002 * 109.54025 * 178.57105 * 18 7 6 37 37 H 1.08997 * 109.50408 * 183.21000 * 19 18 7 38 38 H 1.09001 * 109.50641 * 63.08272 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6782 -0.2070 -2.1396 6 6 3.5710 -0.7266 -1.2473 7 7 4.0547 -1.4870 -2.4089 8 6 5.5220 -1.4687 -2.4761 9 6 5.9787 -2.0559 -3.8131 10 6 7.4839 -2.0365 -3.8822 11 1 8.0575 -1.6450 -3.0551 12 6 8.1290 -2.5196 -5.0010 13 7 7.4305 -2.9969 -6.0080 14 14 9.9948 -2.4950 -5.0871 15 1 10.5524 -3.3047 -3.9740 16 1 10.4381 -3.0650 -6.3847 17 1 10.4773 -1.0955 -4.9712 18 6 3.5459 -2.8659 -2.3773 19 6 2.0151 -2.8392 -2.3678 20 8 1.5637 -2.0698 -1.2501 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 3.9385 0.2981 -1.3043 29 1 3.9322 -1.1930 -0.3308 30 1 5.8769 -0.4417 -2.3900 31 1 5.9306 -2.0638 -1.6594 32 1 5.6238 -3.0828 -3.8990 33 1 5.5701 -1.4607 -4.6298 34 1 7.8841 -3.3364 -6.7953 35 1 3.9067 -3.3665 -1.4789 36 1 3.8951 -3.4036 -3.2588 37 1 1.6339 -3.8571 -2.2869 38 1 1.6533 -2.3867 -3.2911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611502263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:57 Heat of formation + Delta-G solvation = -63.181116 kcal Electronic energy + Delta-G solvation = -16331.512266 eV Core-core repulsion = 13787.203321 eV Total energy + Delta-G solvation = -2544.308945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56702 -36.05081 -35.11697 -32.96849 -30.05624 -29.93190 -27.35896 -26.30816 -24.04082 -23.54242 -21.11788 -20.03096 -19.69652 -16.62789 -16.22027 -15.83143 -14.92934 -14.61228 -14.55452 -14.34189 -13.79156 -13.54190 -13.24106 -12.73571 -12.46536 -12.22583 -12.09992 -11.68925 -11.35949 -11.08907 -11.01499 -10.98996 -10.86157 -10.69300 -10.54234 -10.16997 -9.87987 -9.59068 -9.17349 -9.09553 -8.34075 -7.79228 -6.00666 -4.03286 3.32828 3.37221 3.39520 3.86529 4.27462 4.49526 4.81831 4.92118 5.11766 5.28017 5.33647 5.35198 5.44397 5.50552 5.56620 5.58877 5.76907 5.76969 5.80801 5.86773 6.03966 6.07225 6.10726 6.22377 6.27188 6.33012 6.38596 6.46411 6.93202 7.36660 7.42780 7.51669 7.75991 7.86677 8.05626 8.41766 9.03433 9.60363 11.10710 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050290 B = 0.005246 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.635722 B = 5336.361322 C = 5719.265646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.099 3.901 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.538 5.538 8 C 0.063 3.937 9 C 0.029 3.971 10 C -0.523 4.523 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.017 3.983 19 C 0.066 3.934 20 O -0.386 6.386 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 4.671 10.289 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.205 4.205 4 C 0.041 3.959 5 H 0.082 0.918 6 C -0.106 4.106 7 N -0.262 5.262 8 C -0.064 4.064 9 C -0.009 4.009 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.111 4.111 19 C -0.011 4.011 20 O -0.305 6.305 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.393 4.746 9.825 16.511 hybrid contribution 1.674 -0.375 0.358 1.753 sum -10.718 4.370 10.183 15.416 Atomic orbital electron populations 1.21744 0.94657 1.02287 1.01170 1.21081 0.96462 0.95711 0.97431 1.21866 1.01529 0.95139 1.01999 1.22180 0.92517 0.83290 0.97893 0.91802 1.22813 0.95442 0.99609 0.92733 1.62331 1.12257 1.12447 1.39205 1.22359 0.83116 1.00358 1.00518 1.19087 0.95248 0.95971 0.90575 1.21148 0.91813 1.41129 1.02135 0.92860 1.24987 0.98279 0.95297 0.95669 1.69959 1.35393 1.41502 1.06389 0.86647 0.85741 0.78351 0.77192 1.20293 1.21238 1.20219 1.22788 0.95173 0.90928 1.02198 1.22668 0.93535 0.95679 0.89242 1.87887 1.72803 1.23108 1.46736 0.92889 0.93020 0.91914 0.90763 0.92333 0.92334 0.92097 0.89997 0.94814 0.92017 0.96156 0.96516 0.95710 0.92917 0.94736 0.88609 0.88885 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.05 37.16 0.34 -1.11 16 2 C -0.09 -1.00 2.72 -90.63 -0.25 -1.24 16 3 C -0.15 -1.45 8.85 37.15 0.33 -1.12 16 4 C 0.10 1.39 2.38 -26.68 -0.06 1.33 16 5 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 6 C 0.02 0.36 4.48 -3.71 -0.02 0.34 16 7 N -0.54 -10.17 4.73 -234.31 -1.11 -11.28 16 8 C 0.06 1.37 4.89 -3.82 -0.02 1.35 16 9 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.02 0.31 5.43 -3.71 -0.02 0.29 16 19 C 0.07 0.97 7.01 37.21 0.26 1.23 16 20 O -0.39 -5.89 9.80 -35.23 -0.35 -6.23 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 28 H 0.08 1.21 6.57 -51.93 -0.34 0.87 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 31 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.02 0.46 6.51 -51.93 -0.34 0.12 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.82 6.37 -51.93 -0.33 1.49 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -30.20 298.38 -8.01 -38.21 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.78 Total: -3.75 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.01 Total: -11.95 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.37 Total: -37.46 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.35 Total: -6.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.20 -8.01 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611502263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.974 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds