Wall clock time and date at job start Sun Mar 29 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09000 * 109.50468 * 60.08418 * 4 2 1 6 6 C 1.53096 * 109.51209 * 180.21848 * 4 2 1 7 7 N 1.47015 * 109.26007 * 176.78772 * 6 4 2 8 8 C 1.46896 * 110.99897 * 177.60722 * 7 6 4 9 9 C 1.53004 * 109.47172 * 189.67813 * 8 7 6 10 10 C 1.50695 * 109.47061 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00146 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00196 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00392 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46903 * 60.00635 * 14 12 10 16 16 H 1.48499 * 109.47244 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47347 * 300.00529 * 14 12 10 18 18 C 1.47010 * 110.74924 * 301.38105 * 7 6 4 19 19 C 1.53103 * 109.25904 * 58.61925 * 18 7 6 20 20 O 1.43010 * 109.25607 * 303.14815 * 19 18 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.50254 * 296.72484 * 6 4 2 29 29 H 1.08996 * 109.50596 * 56.84990 * 6 4 2 30 30 H 1.09003 * 109.47417 * 309.68285 * 8 7 6 31 31 H 1.09000 * 109.47251 * 69.67838 * 8 7 6 32 32 H 1.08993 * 109.46802 * 300.00013 * 9 8 7 33 33 H 1.09000 * 109.47012 * 59.99879 * 9 8 7 34 34 H 0.96999 * 120.00199 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.51257 * 298.68111 * 18 7 6 36 36 H 1.09002 * 109.54025 * 178.57105 * 18 7 6 37 37 H 1.08997 * 109.50408 * 183.21000 * 19 18 7 38 38 H 1.09001 * 109.50641 * 63.08272 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6782 -0.2070 -2.1396 6 6 3.5710 -0.7266 -1.2473 7 7 4.0547 -1.4870 -2.4089 8 6 5.5220 -1.4687 -2.4761 9 6 5.9787 -2.0559 -3.8131 10 6 7.4839 -2.0365 -3.8822 11 1 8.0575 -1.6450 -3.0551 12 6 8.1290 -2.5196 -5.0010 13 7 7.4305 -2.9969 -6.0080 14 14 9.9948 -2.4950 -5.0871 15 1 10.5524 -3.3047 -3.9740 16 1 10.4381 -3.0650 -6.3847 17 1 10.4773 -1.0955 -4.9712 18 6 3.5459 -2.8659 -2.3773 19 6 2.0151 -2.8392 -2.3678 20 8 1.5637 -2.0698 -1.2501 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 3.9385 0.2981 -1.3043 29 1 3.9322 -1.1930 -0.3308 30 1 5.8769 -0.4417 -2.3900 31 1 5.9306 -2.0638 -1.6594 32 1 5.6238 -3.0828 -3.8990 33 1 5.5701 -1.4607 -4.6298 34 1 7.8841 -3.3364 -6.7953 35 1 3.9067 -3.3665 -1.4789 36 1 3.8951 -3.4036 -3.2588 37 1 1.6339 -3.8571 -2.2869 38 1 1.6533 -2.3867 -3.2911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611502263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:57 Heat of formation + Delta-G solvation = -82.763738 kcal Electronic energy + Delta-G solvation = -16332.361433 eV Core-core repulsion = 13787.203321 eV Total energy + Delta-G solvation = -2545.158112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83351 -37.48147 -36.20031 -35.05535 -31.89544 -31.20530 -28.47376 -27.64739 -25.70096 -24.95616 -22.71195 -21.34197 -20.98256 -18.64433 -17.45029 -17.22083 -16.62234 -16.25015 -15.84927 -15.69590 -15.08133 -14.81031 -14.59690 -14.14937 -14.01079 -13.55498 -13.29422 -12.96460 -12.88881 -12.80573 -12.53357 -12.36864 -12.06942 -11.94482 -11.84839 -11.66040 -11.51155 -11.32336 -11.13151 -10.56468 -10.50007 -9.32663 -8.21437 -6.33176 1.39733 1.42879 1.50887 2.38999 2.72843 2.91992 3.11941 3.73784 3.94348 4.02653 4.08950 4.13836 4.27903 4.33010 4.37712 4.54030 4.58909 4.64707 4.70234 4.83660 4.83874 4.90804 4.93980 5.02751 5.04014 5.10034 5.24781 5.41453 5.43849 5.48374 5.60388 5.73856 6.00656 6.11399 6.23204 6.27150 6.82922 7.35984 8.90514 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050290 B = 0.005246 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.635722 B = 5336.361322 C = 5719.265646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.146 4.146 4 C 0.100 3.900 5 H 0.060 0.940 6 C 0.024 3.976 7 N -0.550 5.550 8 C 0.079 3.921 9 C 0.037 3.963 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.018 3.982 19 C 0.072 3.928 20 O -0.390 6.390 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.018 0.982 32 H -0.005 1.005 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 5.471 11.535 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.203 4.203 4 C 0.042 3.958 5 H 0.078 0.922 6 C -0.104 4.104 7 N -0.275 5.275 8 C -0.048 4.048 9 C 0.000 4.000 10 C -0.586 4.586 11 H 0.078 0.922 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.111 4.111 19 C -0.005 4.005 20 O -0.309 6.309 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.432 5.554 11.090 17.562 hybrid contribution 1.634 -0.627 -0.037 1.750 sum -10.798 4.927 11.053 16.219 Atomic orbital electron populations 1.21715 0.93595 1.01930 1.02255 1.21097 0.97304 0.96225 0.95675 1.21861 1.01225 0.94142 1.03068 1.22310 0.91108 0.83054 0.99349 0.92179 1.22913 0.96793 0.99502 0.91171 1.62257 1.10360 1.13553 1.41294 1.22006 0.85223 0.99979 0.97601 1.18905 0.94554 0.94434 0.92106 1.21578 0.93031 1.41379 1.02627 0.92242 1.25952 1.03826 0.94578 0.95117 1.70097 1.37690 1.42201 1.07053 0.85480 0.79011 0.78904 0.77518 1.19224 1.20708 1.19099 1.22790 0.97302 0.90046 1.00937 1.22679 0.91220 0.97215 0.89356 1.87899 1.72650 1.23655 1.46710 0.92630 0.91141 0.92983 0.90954 0.92105 0.90469 0.92571 0.88960 0.94930 0.91539 0.96367 0.98647 0.98830 0.92687 0.94998 0.90864 0.86326 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.05 71.98 0.65 -1.84 16 2 C -0.08 -1.73 2.72 -10.80 -0.03 -1.76 16 3 C -0.15 -2.50 8.85 71.98 0.64 -1.86 16 4 C 0.10 2.67 2.38 30.63 0.07 2.74 16 5 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 6 C 0.02 0.74 4.48 86.31 0.39 1.13 16 7 N -0.55 -20.91 4.73 -895.22 -4.23 -25.14 16 8 C 0.08 3.48 4.89 86.31 0.42 3.90 16 9 C 0.04 2.03 4.90 29.85 0.15 2.18 16 10 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 12 C 0.00 0.20 5.46 84.66 0.46 0.66 16 13 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 14 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 C 0.02 0.63 5.43 86.32 0.47 1.09 16 19 C 0.07 2.08 7.01 72.02 0.50 2.59 16 20 O -0.39 -11.34 9.80 -148.98 -1.46 -12.80 16 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.05 7.68 -2.38 -0.02 1.04 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.01 6.51 -2.39 -0.02 1.00 16 28 H 0.09 2.62 6.57 -2.39 -0.02 2.60 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 2.82 8.04 -2.39 -0.02 2.80 16 31 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 32 H 0.00 -0.28 6.51 -2.39 -0.02 -0.29 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 2.92 6.37 -2.39 -0.02 2.90 16 37 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.67 298.38 1.57 -63.10 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.00 Total: 7.78 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.96 Total: -22.57 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -3.95 Total: -81.93 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.46 Total: -12.80 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.67 1.57 -63.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611502263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.661 kcal (2) G-P(sol) polarization free energy of solvation -64.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds