Wall clock time and date at job start Sun Mar 29 2020 21:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47064 * 2 1 4 4 C 1.53001 * 109.47322 * 120.00300 * 2 1 3 5 5 H 1.08998 * 109.50412 * 300.08470 * 4 2 1 6 6 C 1.53097 * 109.50446 * 180.02562 * 4 2 1 7 7 N 1.47016 * 109.25580 * 183.21355 * 6 4 2 8 8 C 1.46898 * 110.99994 * 182.38964 * 7 6 4 9 9 C 1.53006 * 109.46953 * 169.99953 * 8 7 6 10 10 C 1.50697 * 109.46969 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00096 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99584 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00237 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47060 * 89.99905 * 14 12 10 16 16 H 1.48500 * 109.47081 * 210.00515 * 14 12 10 17 17 H 1.48498 * 109.46766 * 330.00222 * 14 12 10 18 18 C 1.47015 * 110.75095 * 58.61926 * 7 6 4 19 19 C 1.53098 * 109.25723 * 301.38182 * 18 7 6 20 20 O 1.43014 * 109.50279 * 60.21856 * 4 2 1 21 21 H 1.08995 * 109.47009 * 299.99860 * 1 2 3 22 22 H 1.09000 * 109.47081 * 59.99410 * 1 2 3 23 23 H 1.08994 * 109.46883 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47065 * 240.00622 * 2 1 3 25 25 H 1.08994 * 109.46985 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47128 * 300.00249 * 3 2 1 27 27 H 1.09002 * 109.46246 * 60.00188 * 3 2 1 28 28 H 1.09000 * 109.50984 * 63.28479 * 6 4 2 29 29 H 1.08996 * 109.54131 * 303.17185 * 6 4 2 30 30 H 1.08994 * 109.47795 * 290.00356 * 8 7 6 31 31 H 1.08996 * 109.47199 * 50.00736 * 8 7 6 32 32 H 1.08994 * 109.47199 * 300.00767 * 9 8 7 33 33 H 1.09009 * 109.46751 * 60.00423 * 9 8 7 34 34 H 0.97002 * 119.99336 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.50673 * 61.31448 * 18 7 6 36 36 H 1.09004 * 109.50788 * 181.44864 * 18 7 6 37 37 H 1.08997 * 109.51060 * 296.91507 * 19 18 7 38 38 H 1.08998 * 109.54334 * 176.80599 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6758 -0.2088 2.1396 6 6 3.5710 -0.7212 1.2502 7 7 4.0552 -1.4816 2.4116 8 6 5.5223 -1.4583 2.4817 9 6 5.9781 -2.0385 3.8221 10 6 7.4831 -2.0141 3.8942 11 1 8.0571 -1.6234 3.0670 12 6 8.1273 -2.4905 5.0163 13 7 9.4408 -2.4687 5.0795 14 14 7.1345 -3.1669 6.4468 15 1 6.9201 -4.6237 6.2555 16 1 7.8733 -2.9374 7.7144 17 1 5.8209 -2.4770 6.5077 18 6 3.5513 -2.8623 2.3770 19 6 2.0205 -2.8409 2.3646 20 8 1.5680 -2.0713 1.2473 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9563 0.8901 28 1 3.9349 0.3046 1.3096 29 1 3.9363 -1.1845 0.3338 30 1 5.9345 -2.0555 1.6683 31 1 5.8740 -0.4306 2.3923 32 1 5.5659 -1.4414 4.6354 33 1 5.6263 -3.0664 3.9115 34 1 9.8940 -2.8035 5.8691 35 1 3.9156 -3.3603 1.4785 36 1 3.9006 -3.3995 3.2588 37 1 1.6552 -2.3911 3.2878 38 1 1.6423 -3.8598 2.2818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611502267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:59 Heat of formation + Delta-G solvation = -59.780729 kcal Electronic energy + Delta-G solvation = -16394.086479 eV Core-core repulsion = 13849.924985 eV Total energy + Delta-G solvation = -2544.161494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66804 -36.17457 -35.19939 -32.92513 -30.44853 -30.08786 -27.48741 -26.54315 -24.05123 -23.57864 -20.98865 -20.11245 -19.72304 -16.98070 -16.36072 -15.95127 -15.09460 -14.71447 -14.61676 -14.12423 -13.91121 -13.51715 -13.37322 -12.82013 -12.69541 -12.51173 -12.25514 -11.80064 -11.54367 -11.23553 -11.10654 -11.08726 -10.90457 -10.74175 -10.31173 -10.04978 -9.92164 -9.76202 -9.29183 -9.22402 -8.54021 -7.93146 -6.05665 -4.03991 3.30544 3.38297 3.43890 3.77890 4.19067 4.44988 4.74816 4.86152 5.05375 5.17835 5.26107 5.28445 5.33954 5.41225 5.47196 5.53549 5.68739 5.69594 5.75368 5.80623 5.96583 6.00496 6.01435 6.08969 6.17791 6.24484 6.27116 6.33511 6.72429 7.09380 7.22840 7.29388 7.52892 7.57453 7.82047 8.51541 8.98182 9.56689 11.07719 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045735 B = 0.005762 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.079678 B = 4858.275000 C = 5228.127184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.099 3.901 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.541 5.541 8 C 0.071 3.929 9 C -0.007 4.007 10 C -0.522 4.522 11 H 0.070 0.930 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.263 1.263 18 C 0.016 3.984 19 C 0.066 3.934 20 O -0.385 6.385 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.213 3.552 -8.285 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.206 4.206 4 C 0.041 3.959 5 H 0.082 0.918 6 C -0.106 4.106 7 N -0.266 5.266 8 C -0.056 4.056 9 C -0.044 4.044 10 C -0.560 4.560 11 H 0.089 0.911 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.113 4.113 19 C -0.011 4.011 20 O -0.304 6.304 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.352 3.665 -7.888 19.410 hybrid contribution 0.303 -0.750 0.316 0.869 sum -17.049 2.915 -7.572 18.881 Atomic orbital electron populations 1.21744 0.94638 1.02276 1.01216 1.21087 0.96473 0.95745 0.97381 1.21873 1.01569 0.95081 1.02044 1.22190 0.92508 0.83204 0.98001 0.91786 1.22816 0.95443 0.99677 0.92636 1.62341 1.12355 1.12272 1.39623 1.22150 0.83031 1.00869 0.99519 1.19568 0.96714 0.95420 0.92729 1.21075 0.89603 1.41687 1.03684 0.91140 1.24995 0.94751 0.95273 0.98306 1.69920 1.07599 1.47261 1.29471 0.86768 0.80885 0.79625 0.82017 1.20345 1.21366 1.18768 1.22800 0.95398 0.90963 1.02122 1.22658 0.93362 0.95778 0.89338 1.87903 1.72908 1.22988 1.46591 0.92896 0.92963 0.91933 0.90692 0.92045 0.92264 0.92347 0.89790 0.94559 0.95472 0.91358 0.95705 0.97124 0.92710 0.94369 0.89058 0.92552 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.05 37.16 0.34 -1.04 16 2 C -0.09 -0.95 2.72 -90.61 -0.25 -1.20 16 3 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 4 C 0.10 1.32 2.38 -26.68 -0.06 1.25 16 5 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 6 C 0.02 0.34 4.47 -3.71 -0.02 0.32 16 7 N -0.54 -9.64 4.73 -234.31 -1.11 -10.75 16 8 C 0.07 1.47 4.89 -3.82 -0.02 1.45 16 9 C -0.01 -0.16 3.98 -27.88 -0.11 -0.27 16 10 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 11 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 14 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 18 C 0.02 0.25 5.44 -3.71 -0.02 0.23 16 19 C 0.07 0.90 7.01 37.21 0.26 1.16 16 20 O -0.38 -5.56 9.81 -35.23 -0.35 -5.90 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.59 6.51 -51.93 -0.34 0.25 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.18 6.56 -51.93 -0.34 0.84 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 32 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 33 H 0.01 0.25 5.94 -51.92 -0.31 -0.05 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.56 6.38 -51.93 -0.33 1.23 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 294.79 15.07 4.44 4.44 Total: -1.00 -30.80 294.79 -7.63 -38.43 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.74 Total: -3.60 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.02 Total: -12.59 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.33 Total: -38.00 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.35 Total: -5.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.80 -7.63 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611502267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.351 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds