Wall clock time and date at job start Sun Mar 29 2020 21:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47064 * 2 1 4 4 C 1.53001 * 109.47322 * 120.00300 * 2 1 3 5 5 H 1.08998 * 109.50412 * 300.08470 * 4 2 1 6 6 C 1.53097 * 109.50446 * 180.02562 * 4 2 1 7 7 N 1.47016 * 109.25580 * 183.21355 * 6 4 2 8 8 C 1.46898 * 110.99994 * 182.38964 * 7 6 4 9 9 C 1.53006 * 109.46953 * 169.99953 * 8 7 6 10 10 C 1.50697 * 109.46969 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00096 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99584 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00237 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47060 * 89.99905 * 14 12 10 16 16 H 1.48500 * 109.47081 * 210.00515 * 14 12 10 17 17 H 1.48498 * 109.46766 * 330.00222 * 14 12 10 18 18 C 1.47015 * 110.75095 * 58.61926 * 7 6 4 19 19 C 1.53098 * 109.25723 * 301.38182 * 18 7 6 20 20 O 1.43014 * 109.50279 * 60.21856 * 4 2 1 21 21 H 1.08995 * 109.47009 * 299.99860 * 1 2 3 22 22 H 1.09000 * 109.47081 * 59.99410 * 1 2 3 23 23 H 1.08994 * 109.46883 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47065 * 240.00622 * 2 1 3 25 25 H 1.08994 * 109.46985 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47128 * 300.00249 * 3 2 1 27 27 H 1.09002 * 109.46246 * 60.00188 * 3 2 1 28 28 H 1.09000 * 109.50984 * 63.28479 * 6 4 2 29 29 H 1.08996 * 109.54131 * 303.17185 * 6 4 2 30 30 H 1.08994 * 109.47795 * 290.00356 * 8 7 6 31 31 H 1.08996 * 109.47199 * 50.00736 * 8 7 6 32 32 H 1.08994 * 109.47199 * 300.00767 * 9 8 7 33 33 H 1.09009 * 109.46751 * 60.00423 * 9 8 7 34 34 H 0.97002 * 119.99336 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.50673 * 61.31448 * 18 7 6 36 36 H 1.09004 * 109.50788 * 181.44864 * 18 7 6 37 37 H 1.08997 * 109.51060 * 296.91507 * 19 18 7 38 38 H 1.08998 * 109.54334 * 176.80599 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6758 -0.2088 2.1396 6 6 3.5710 -0.7212 1.2502 7 7 4.0552 -1.4816 2.4116 8 6 5.5223 -1.4583 2.4817 9 6 5.9781 -2.0385 3.8221 10 6 7.4831 -2.0141 3.8942 11 1 8.0571 -1.6234 3.0670 12 6 8.1273 -2.4905 5.0163 13 7 9.4408 -2.4687 5.0795 14 14 7.1345 -3.1669 6.4468 15 1 6.9201 -4.6237 6.2555 16 1 7.8733 -2.9374 7.7144 17 1 5.8209 -2.4770 6.5077 18 6 3.5513 -2.8623 2.3770 19 6 2.0205 -2.8409 2.3646 20 8 1.5680 -2.0713 1.2473 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9563 0.8901 28 1 3.9349 0.3046 1.3096 29 1 3.9363 -1.1845 0.3338 30 1 5.9345 -2.0555 1.6683 31 1 5.8740 -0.4306 2.3923 32 1 5.5659 -1.4414 4.6354 33 1 5.6263 -3.0664 3.9115 34 1 9.8940 -2.8035 5.8691 35 1 3.9156 -3.3603 1.4785 36 1 3.9006 -3.3995 3.2588 37 1 1.6552 -2.3911 3.2878 38 1 1.6423 -3.8598 2.2818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611502267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:59 Heat of formation + Delta-G solvation = -80.537984 kcal Electronic energy + Delta-G solvation = -16394.986581 eV Core-core repulsion = 13849.924985 eV Total energy + Delta-G solvation = -2545.061596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84190 -37.52393 -36.20083 -35.01675 -32.32806 -31.20710 -28.63119 -27.71559 -25.52955 -24.95209 -22.51232 -21.34672 -20.98110 -19.06761 -17.47332 -17.22648 -16.58262 -16.20951 -15.79571 -15.69022 -15.14054 -14.80318 -14.65375 -14.61734 -14.04342 -13.59786 -13.42402 -12.98747 -12.92649 -12.82858 -12.41475 -12.08742 -12.08083 -11.91308 -11.78948 -11.68031 -11.64082 -11.40538 -11.15670 -10.77698 -10.52532 -9.37129 -8.31949 -6.36769 1.34827 1.37540 1.50395 2.35060 2.72445 2.87126 3.03561 3.73326 3.93710 4.02068 4.08066 4.13404 4.26533 4.30226 4.36795 4.50834 4.58621 4.60717 4.70421 4.80850 4.83228 4.89346 4.90499 4.97345 5.03442 5.09623 5.21671 5.25632 5.40827 5.43396 5.47990 5.59526 5.99657 6.05523 6.22809 6.26344 6.70491 7.28168 8.84806 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045735 B = 0.005762 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.079678 B = 4858.275000 C = 5228.127184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.146 4.146 4 C 0.101 3.899 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.547 5.547 8 C 0.082 3.918 9 C 0.002 3.998 10 C -0.536 4.536 11 H 0.031 0.969 12 C 0.008 3.992 13 N -0.950 5.950 14 Si 0.952 3.048 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.248 1.248 18 C 0.012 3.988 19 C 0.070 3.930 20 O -0.392 6.392 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.267 0.733 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.738 3.504 -7.965 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.203 4.203 4 C 0.043 3.957 5 H 0.082 0.918 6 C -0.105 4.105 7 N -0.271 5.271 8 C -0.045 4.045 9 C -0.036 4.036 10 C -0.574 4.574 11 H 0.049 0.951 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.171 1.171 18 C -0.116 4.116 19 C -0.007 4.007 20 O -0.311 6.311 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.898 3.622 -7.589 21.602 hybrid contribution 1.147 -0.701 0.134 1.351 sum -18.751 2.922 -7.455 20.389 Atomic orbital electron populations 1.21710 0.93555 1.01947 1.02252 1.21102 0.97323 0.96180 0.95804 1.21867 1.01163 0.94239 1.03076 1.22280 0.90959 0.83080 0.99332 0.91841 1.22916 0.96875 0.99520 0.91192 1.62288 1.10027 1.13568 1.41267 1.21847 0.85346 1.00070 0.97233 1.19422 0.93573 0.96031 0.94561 1.21392 0.91983 1.41321 1.02699 0.95055 1.25978 0.95838 0.95548 1.01561 1.70067 1.09661 1.48596 1.30721 0.85633 0.79621 0.79439 0.77835 1.18970 1.20801 1.17131 1.22890 0.97413 0.89898 1.01445 1.22723 0.91200 0.97276 0.89464 1.87913 1.72800 1.23466 1.46884 0.92507 0.91313 0.92923 0.91136 0.92682 0.90616 0.91972 0.89052 0.95102 0.96545 0.91752 0.95897 0.96314 0.92371 0.94960 0.89826 0.92084 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.05 71.98 0.65 -1.68 16 2 C -0.09 -1.66 2.72 -10.79 -0.03 -1.69 16 3 C -0.15 -2.40 8.84 71.99 0.64 -1.77 16 4 C 0.10 2.51 2.38 30.63 0.07 2.58 16 5 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 6 C 0.02 0.66 4.47 86.31 0.39 1.05 16 7 N -0.55 -18.92 4.73 -895.22 -4.23 -23.16 16 8 C 0.08 3.42 4.89 86.31 0.42 3.85 16 9 C 0.00 0.09 3.98 29.85 0.12 0.21 16 10 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 11 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 12 C 0.01 0.46 5.47 84.65 0.46 0.92 16 13 N -0.95 -60.09 13.96 21.45 0.30 -59.80 16 14 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 15 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 18 C 0.01 0.37 5.44 86.31 0.47 0.84 16 19 C 0.07 1.77 7.01 72.01 0.50 2.27 16 20 O -0.39 -10.46 9.81 -148.98 -1.46 -11.92 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 1.00 7.69 -2.39 -0.02 0.98 16 24 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.05 0.97 6.51 -2.39 -0.02 0.96 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 2.48 6.56 -2.39 -0.02 2.46 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.06 2.68 8.04 -2.39 -0.02 2.66 16 32 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 33 H 0.02 0.87 5.94 -2.38 -0.01 0.86 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.73 6.38 -2.38 -0.02 2.71 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -66.10 294.79 1.38 -64.73 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.94 Total: 8.21 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 3.94 Total: -24.64 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.93 Total: -82.95 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.46 Total: -11.92 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -66.10 1.38 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611502267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.811 kcal (2) G-P(sol) polarization free energy of solvation -66.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds