Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47330 * 2 1 4 4 O 1.42906 * 109.47249 * 239.99857 * 2 1 3 5 5 C 1.53004 * 109.47353 * 120.00252 * 2 1 3 6 6 N 1.46902 * 109.47503 * 177.12421 * 5 2 1 7 7 C 1.46897 * 110.99775 * 152.63856 * 6 5 2 8 8 C 1.52999 * 109.46715 * 194.44065 * 7 6 5 9 9 C 1.50706 * 109.47292 * 184.55944 * 8 7 6 10 10 H 1.07998 * 119.99694 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00121 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99789 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00026 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46932 * 90.00437 * 13 11 9 15 15 H 1.48499 * 109.46990 * 210.00295 * 13 11 9 16 16 H 1.48503 * 109.46810 * 330.00341 * 13 11 9 17 17 C 1.46899 * 110.99551 * 276.59522 * 6 5 2 18 18 C 1.52994 * 117.50310 * 0.69702 * 17 6 5 19 19 C 1.52998 * 117.49834 * 292.07016 * 17 6 5 20 20 H 1.08999 * 109.46917 * 295.19436 * 1 2 3 21 21 H 1.08995 * 109.46969 * 55.19049 * 1 2 3 22 22 H 1.09001 * 109.47139 * 175.19315 * 1 2 3 23 23 H 1.08999 * 109.47170 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47404 * 299.99962 * 3 2 1 25 25 H 1.08997 * 109.47346 * 60.00466 * 3 2 1 26 26 H 0.96698 * 113.99951 * 171.91142 * 4 2 1 27 27 H 1.09006 * 109.46743 * 297.12472 * 5 2 1 28 28 H 1.09001 * 109.47057 * 57.12142 * 5 2 1 29 29 H 1.08996 * 109.47544 * 314.43840 * 7 6 5 30 30 H 1.09003 * 109.47265 * 74.44600 * 7 6 5 31 31 H 1.09001 * 109.47610 * 304.55739 * 8 7 6 32 32 H 1.09004 * 109.47354 * 64.56184 * 8 7 6 33 33 H 0.96993 * 119.99946 * 179.97438 * 12 11 9 34 34 H 1.08998 * 115.54452 * 146.41011 * 17 6 5 35 35 H 1.09005 * 117.49580 * 359.97438 * 18 17 6 36 36 H 1.08995 * 117.50362 * 145.02059 * 18 17 6 37 37 H 1.08993 * 117.49882 * 214.98045 * 19 17 6 38 38 H 1.09003 * 117.49927 * 359.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5074 -0.7818 1.2150 7 6 4.0635 -0.8444 2.5732 8 6 5.5632 -0.5456 2.5245 9 6 6.1550 -0.7192 3.8995 10 1 5.5244 -1.0129 4.7257 11 6 7.5013 -0.5022 4.1031 12 7 8.0178 -0.6542 5.3030 13 14 8.5919 0.0064 2.6743 14 1 8.6213 1.4879 2.5771 15 1 9.9691 -0.5024 2.8972 16 1 8.0522 -0.5619 1.4130 17 6 3.9687 -1.9167 0.4044 18 6 2.9023 -2.7955 -0.2524 19 6 3.7000 -3.3239 0.9415 20 1 -0.3633 0.4375 0.9299 21 1 -0.3633 0.5866 -0.8437 22 1 -0.3633 -1.0241 -0.0861 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 2.9620 -0.6057 -1.2976 27 1 1.7194 -0.1785 2.1385 28 1 1.6352 -1.7330 1.2754 29 1 3.5665 -0.1071 3.2037 30 1 3.9048 -1.8409 2.9853 31 1 6.0482 -1.2324 1.8309 32 1 5.7187 0.4798 2.1889 33 1 8.9650 -0.5019 5.4461 34 1 4.8968 -1.7561 -0.1441 35 1 1.8583 -2.5317 -0.0827 36 1 3.1285 -3.2131 -1.2334 37 1 4.4510 -4.0892 0.7459 38 1 3.1813 -3.4076 1.8966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614587619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -20.525836 kcal Electronic energy + Delta-G solvation = -16811.065364 eV Core-core repulsion = 14268.606090 eV Total energy + Delta-G solvation = -2542.459274 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76232 -36.77134 -34.06384 -32.82542 -31.84853 -29.70999 -27.23466 -25.94903 -24.06684 -22.07084 -21.39954 -19.86009 -19.00672 -17.07370 -16.67382 -16.07877 -15.19329 -14.84697 -14.17304 -14.02667 -13.43023 -13.19294 -12.70333 -12.67164 -12.30584 -12.22433 -11.94788 -11.64839 -11.54612 -11.39438 -11.05174 -10.96751 -10.72900 -10.60606 -10.04301 -9.90610 -9.72791 -9.69191 -9.27138 -9.19837 -8.52017 -7.84524 -6.03466 -4.01279 3.32841 3.39846 3.44739 4.06297 4.25278 4.36644 4.47004 4.99727 5.03482 5.13889 5.20031 5.25458 5.31640 5.33118 5.55794 5.67266 5.73270 5.85022 5.92693 5.99880 6.07005 6.13174 6.18183 6.22218 6.28531 6.38707 6.46158 6.50626 6.79181 7.14917 7.33886 7.57647 7.59062 7.84926 7.89328 8.54158 9.00707 9.59338 11.10051 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.007058 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.066755 B = 3966.213268 C = 4143.639502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.135 3.865 3 C -0.170 4.170 4 O -0.560 6.560 5 C 0.018 3.982 6 N -0.510 5.510 7 C 0.072 3.928 8 C -0.002 4.002 9 C -0.520 4.520 10 H 0.069 0.931 11 C 0.067 3.933 12 N -0.905 5.905 13 Si 0.882 3.118 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C 0.021 3.979 18 C -0.174 4.174 19 C -0.216 4.216 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.380 0.620 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 -0.154 -11.899 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.094 3.906 3 C -0.228 4.228 4 O -0.368 6.368 5 C -0.111 4.111 6 N -0.233 5.233 7 C -0.054 4.054 8 C -0.040 4.040 9 C -0.559 4.559 10 H 0.087 0.913 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.189 1.189 17 C -0.088 4.088 18 C -0.211 4.211 19 C -0.255 4.255 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.230 0.770 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.899 0.170 -12.061 17.661 hybrid contribution 1.092 -0.348 0.016 1.146 sum -11.808 -0.178 -12.046 16.869 Atomic orbital electron populations 1.21741 0.93453 1.02351 1.02075 1.21103 0.93250 0.91320 0.84898 1.22372 1.03232 0.95817 1.01354 1.86439 1.28781 1.76470 1.45131 1.22939 0.89491 1.00092 0.98561 1.62157 1.06577 1.39199 1.15347 1.22223 0.98158 0.99474 0.85587 1.19476 0.90587 0.96501 0.97448 1.21098 0.94149 1.46660 0.93968 0.91281 1.24992 0.98024 0.94856 0.95510 1.69915 1.13079 1.50129 1.21293 0.86743 0.79636 0.79107 0.83584 1.20333 1.21561 1.18937 1.22877 0.99453 0.85883 1.00575 1.23480 0.98323 1.02579 0.96736 1.23366 1.04368 0.99312 0.98440 0.91475 0.92055 0.92274 0.90700 0.92988 0.92264 0.77022 0.90791 0.93184 0.91890 0.94898 0.96460 0.96527 0.92774 0.86321 0.87144 0.89089 0.89004 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.84 37.16 0.33 -1.11 16 2 C 0.14 1.65 1.05 -90.62 -0.10 1.56 16 3 C -0.17 -2.07 8.61 37.16 0.32 -1.75 16 4 O -0.56 -7.15 9.90 -35.23 -0.35 -7.50 16 5 C 0.02 0.25 3.96 -3.82 -0.02 0.23 16 6 N -0.51 -8.26 3.84 -226.65 -0.87 -9.13 16 7 C 0.07 1.43 4.79 -3.83 -0.02 1.41 16 8 C 0.00 -0.06 4.16 -27.88 -0.12 -0.17 16 9 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 10 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 13 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 17 C 0.02 0.32 3.94 -67.72 -0.27 0.05 16 18 C -0.17 -2.25 7.17 -26.73 -0.19 -2.45 16 19 C -0.22 -3.21 9.26 -26.73 -0.25 -3.46 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.38 4.70 6.89 45.56 0.31 5.01 16 27 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 28 H 0.05 0.69 5.37 -51.93 -0.28 0.41 16 29 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 30 H 0.03 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.02 0.42 6.43 -51.93 -0.33 0.08 16 32 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.12 1.84 8.08 -51.93 -0.42 1.42 16 35 H 0.11 1.47 4.74 -51.93 -0.25 1.22 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.40 7.22 -51.93 -0.38 1.03 16 LS Contribution 291.89 15.07 4.40 4.40 Total: -1.00 -29.97 291.89 -7.26 -37.23 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.81 Total: 4.02 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.73 Total: -19.02 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.10 Total: -36.44 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.35 Total: -7.50 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.97 -7.26 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614587619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.705 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds