Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47330 * 2 1 4 4 O 1.42906 * 109.47249 * 239.99857 * 2 1 3 5 5 C 1.53004 * 109.47353 * 120.00252 * 2 1 3 6 6 N 1.46902 * 109.47503 * 177.12421 * 5 2 1 7 7 C 1.46897 * 110.99775 * 152.63856 * 6 5 2 8 8 C 1.52999 * 109.46715 * 194.44065 * 7 6 5 9 9 C 1.50706 * 109.47292 * 184.55944 * 8 7 6 10 10 H 1.07998 * 119.99694 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00121 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99789 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00026 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46932 * 90.00437 * 13 11 9 15 15 H 1.48499 * 109.46990 * 210.00295 * 13 11 9 16 16 H 1.48503 * 109.46810 * 330.00341 * 13 11 9 17 17 C 1.46899 * 110.99551 * 276.59522 * 6 5 2 18 18 C 1.52994 * 117.50310 * 0.69702 * 17 6 5 19 19 C 1.52998 * 117.49834 * 292.07016 * 17 6 5 20 20 H 1.08999 * 109.46917 * 295.19436 * 1 2 3 21 21 H 1.08995 * 109.46969 * 55.19049 * 1 2 3 22 22 H 1.09001 * 109.47139 * 175.19315 * 1 2 3 23 23 H 1.08999 * 109.47170 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47404 * 299.99962 * 3 2 1 25 25 H 1.08997 * 109.47346 * 60.00466 * 3 2 1 26 26 H 0.96698 * 113.99951 * 171.91142 * 4 2 1 27 27 H 1.09006 * 109.46743 * 297.12472 * 5 2 1 28 28 H 1.09001 * 109.47057 * 57.12142 * 5 2 1 29 29 H 1.08996 * 109.47544 * 314.43840 * 7 6 5 30 30 H 1.09003 * 109.47265 * 74.44600 * 7 6 5 31 31 H 1.09001 * 109.47610 * 304.55739 * 8 7 6 32 32 H 1.09004 * 109.47354 * 64.56184 * 8 7 6 33 33 H 0.96993 * 119.99946 * 179.97438 * 12 11 9 34 34 H 1.08998 * 115.54452 * 146.41011 * 17 6 5 35 35 H 1.09005 * 117.49580 * 359.97438 * 18 17 6 36 36 H 1.08995 * 117.50362 * 145.02059 * 18 17 6 37 37 H 1.08993 * 117.49882 * 214.98045 * 19 17 6 38 38 H 1.09003 * 117.49927 * 359.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5074 -0.7818 1.2150 7 6 4.0635 -0.8444 2.5732 8 6 5.5632 -0.5456 2.5245 9 6 6.1550 -0.7192 3.8995 10 1 5.5244 -1.0129 4.7257 11 6 7.5013 -0.5022 4.1031 12 7 8.0178 -0.6542 5.3030 13 14 8.5919 0.0064 2.6743 14 1 8.6213 1.4879 2.5771 15 1 9.9691 -0.5024 2.8972 16 1 8.0522 -0.5619 1.4130 17 6 3.9687 -1.9167 0.4044 18 6 2.9023 -2.7955 -0.2524 19 6 3.7000 -3.3239 0.9415 20 1 -0.3633 0.4375 0.9299 21 1 -0.3633 0.5866 -0.8437 22 1 -0.3633 -1.0241 -0.0861 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 2.9620 -0.6057 -1.2976 27 1 1.7194 -0.1785 2.1385 28 1 1.6352 -1.7330 1.2754 29 1 3.5665 -0.1071 3.2037 30 1 3.9048 -1.8409 2.9853 31 1 6.0482 -1.2324 1.8309 32 1 5.7187 0.4798 2.1889 33 1 8.9650 -0.5019 5.4461 34 1 4.8968 -1.7561 -0.1441 35 1 1.8583 -2.5317 -0.0827 36 1 3.1285 -3.2131 -1.2334 37 1 4.4510 -4.0892 0.7459 38 1 3.1813 -3.4076 1.8966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614587619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -40.936732 kcal Electronic energy + Delta-G solvation = -16811.950447 eV Core-core repulsion = 14268.606090 eV Total energy + Delta-G solvation = -2543.344357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92242 -37.86302 -35.72715 -34.47848 -33.18424 -31.38033 -28.13975 -27.42217 -25.60263 -23.44748 -22.80336 -21.06537 -20.32112 -19.01466 -18.03099 -17.21361 -16.55306 -16.14763 -15.87228 -15.22096 -14.82814 -14.69873 -14.62940 -13.75631 -13.65031 -13.22856 -13.15574 -12.98048 -12.75947 -12.56901 -12.51347 -12.34972 -12.08022 -11.90769 -11.74661 -11.44952 -11.40053 -11.33519 -10.87790 -10.75495 -10.43882 -9.15745 -8.29782 -6.33592 1.36473 1.37682 1.50556 2.36504 2.81567 3.06237 3.06977 3.41059 3.90484 4.00228 4.07162 4.11412 4.13440 4.29820 4.44603 4.50535 4.63639 4.71791 4.83013 4.83439 4.97206 5.00599 5.03270 5.09867 5.18906 5.20691 5.27242 5.35418 5.36891 5.49513 5.53165 5.63675 6.11662 6.20795 6.32234 6.74247 6.91772 7.31189 8.87102 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.007058 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.066755 B = 3966.213268 C = 4143.639502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.139 3.861 3 C -0.167 4.167 4 O -0.563 6.563 5 C 0.018 3.982 6 N -0.507 5.507 7 C 0.085 3.915 8 C 0.007 3.993 9 C -0.531 4.531 10 H 0.029 0.971 11 C 0.006 3.994 12 N -0.952 5.952 13 Si 0.953 3.047 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.247 1.247 17 C 0.004 3.996 18 C -0.139 4.139 19 C -0.228 4.228 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.382 0.618 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 0.205 -14.412 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.098 3.902 3 C -0.225 4.225 4 O -0.371 6.371 5 C -0.110 4.110 6 N -0.230 5.230 7 C -0.043 4.043 8 C -0.031 4.031 9 C -0.570 4.570 10 H 0.048 0.952 11 C -0.191 4.191 12 N -0.593 5.593 13 Si 0.776 3.224 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.170 1.170 17 C -0.105 4.105 18 C -0.176 4.176 19 C -0.267 4.267 20 H 0.097 0.903 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.651 0.526 -14.589 19.987 hybrid contribution 1.256 -0.494 0.872 1.607 sum -12.395 0.032 -13.717 18.488 Atomic orbital electron populations 1.21746 0.91750 1.02789 1.03103 1.21130 0.94403 0.90905 0.83779 1.22333 1.02046 0.95992 1.02082 1.86439 1.28993 1.76539 1.45136 1.23037 0.87725 1.00523 0.99736 1.62053 1.08134 1.39955 1.12825 1.21886 0.95962 0.98505 0.87902 1.19318 0.92974 0.96381 0.94389 1.21440 0.94184 1.46140 0.95226 0.95243 1.25972 0.99744 0.94846 0.98499 1.70067 1.13723 1.51643 1.23853 0.85622 0.77359 0.79172 0.80254 1.19252 1.21081 1.17020 1.22954 1.00658 0.85663 1.01235 1.23444 0.97560 0.99929 0.96687 1.23375 1.05234 0.99226 0.98904 0.90322 0.91266 0.92111 0.92438 0.91840 0.91990 0.76857 0.90880 0.93002 0.92307 0.96240 0.96313 0.96383 0.92508 0.86426 0.87015 0.87114 0.88652 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.84 71.98 0.64 -1.80 16 2 C 0.14 3.06 1.05 -10.79 -0.01 3.04 16 3 C -0.17 -3.71 8.61 71.98 0.62 -3.09 16 4 O -0.56 -12.78 9.90 -148.98 -1.48 -14.26 16 5 C 0.02 0.47 3.96 86.30 0.34 0.81 16 6 N -0.51 -15.84 3.84 -870.99 -3.35 -19.19 16 7 C 0.08 3.37 4.79 86.30 0.41 3.78 16 8 C 0.01 0.34 4.16 29.85 0.12 0.47 16 9 C -0.53 -31.09 9.66 25.60 0.25 -30.84 16 10 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 11 C 0.01 0.36 5.47 84.66 0.46 0.82 16 12 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 13 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 16 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 17 C 0.00 0.11 3.94 44.91 0.18 0.29 16 18 C -0.14 -3.25 7.17 30.59 0.22 -3.03 16 19 C -0.23 -6.52 9.26 30.59 0.28 -6.24 16 20 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.48 7.69 -2.39 -0.02 1.46 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.38 8.43 6.89 -74.06 -0.51 7.92 16 27 H 0.07 1.91 7.53 -2.38 -0.02 1.90 16 28 H 0.05 1.34 5.37 -2.39 -0.01 1.33 16 29 H 0.06 2.36 7.67 -2.39 -0.02 2.34 16 30 H 0.02 0.82 6.56 -2.39 -0.02 0.80 16 31 H 0.02 0.88 6.43 -2.39 -0.02 0.86 16 32 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 34 H 0.12 3.42 8.08 -2.39 -0.02 3.41 16 35 H 0.11 2.64 4.74 -2.38 -0.01 2.63 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.07 2.35 7.22 -2.39 -0.02 2.34 16 Total: -1.00 -64.55 291.89 1.33 -63.21 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.46 Total: 19.24 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 3.51 Total: -35.78 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -3.05 Total: -79.30 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.48 Total: -14.26 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -64.55 1.33 -63.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614587619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.277 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds