Wall clock time and date at job start Sun Mar 29 2020 22:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47168 * 2 1 4 4 O 1.42896 * 109.47540 * 120.00135 * 2 1 3 5 5 C 1.52997 * 109.46991 * 240.00306 * 2 1 3 6 6 H 1.09000 * 109.46683 * 58.93613 * 5 2 1 7 7 C 1.53033 * 109.46554 * 298.95626 * 5 2 1 8 8 C 1.53117 * 109.28332 * 180.80168 * 7 5 2 9 9 H 1.08997 * 109.52438 * 297.75504 * 8 7 5 10 10 C 1.53001 * 109.52484 * 177.55564 * 8 7 5 11 11 C 1.53124 * 109.15686 * 57.65718 * 8 7 5 12 12 C 1.53036 * 109.27679 * 302.34195 * 11 8 7 13 13 N 1.46846 * 109.46548 * 178.90081 * 5 2 1 14 14 C 1.46901 * 111.00246 * 305.85819 * 13 5 2 15 15 C 1.50704 * 109.47175 * 170.51606 * 14 13 5 16 16 H 1.07996 * 120.00177 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99519 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00370 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99717 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47241 * 120.00258 * 19 17 15 22 22 H 1.48504 * 109.47636 * 240.00490 * 19 17 15 23 23 H 1.09005 * 109.47374 * 306.24280 * 1 2 3 24 24 H 1.08993 * 109.47461 * 66.24199 * 1 2 3 25 25 H 1.09003 * 109.46962 * 186.24238 * 1 2 3 26 26 H 0.96695 * 114.00111 * 300.00186 * 4 2 1 27 27 H 1.09003 * 109.50569 * 300.74859 * 7 5 2 28 28 H 1.09008 * 109.50103 * 60.82357 * 7 5 2 29 29 H 1.09002 * 109.46395 * 60.00855 * 10 8 7 30 30 H 1.08998 * 109.47022 * 179.97438 * 10 8 7 31 31 H 1.08990 * 109.47409 * 300.00435 * 10 8 7 32 32 H 1.08994 * 109.50513 * 62.28734 * 11 8 7 33 33 H 1.09000 * 109.50524 * 182.40700 * 11 8 7 34 34 H 1.09001 * 109.46270 * 179.19379 * 12 11 8 35 35 H 1.08992 * 109.47004 * 299.17873 * 12 11 8 36 36 H 1.09000 * 109.47015 * 290.52363 * 14 13 5 37 37 H 1.09006 * 109.46697 * 50.52073 * 14 13 5 38 38 H 0.96996 * 119.99737 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6611 -0.2184 -2.1391 7 6 1.5513 -2.1713 -1.2361 8 6 2.0805 -2.8945 -2.4777 9 1 1.6821 -2.4188 -3.3738 10 6 1.6460 -4.3610 -2.4393 11 6 3.6096 -2.8142 -2.4924 12 6 4.0386 -1.3454 -2.4693 13 7 3.5082 -0.6982 -1.2625 14 6 4.0144 0.6751 -1.1359 15 6 5.5054 0.6428 -0.9195 16 1 6.0251 -0.3031 -0.8804 17 6 6.2062 1.8211 -0.7724 18 7 5.5734 2.9730 -0.8205 19 14 8.0545 1.7813 -0.5049 20 1 8.5224 0.3719 -0.4913 21 1 8.7298 2.5159 -1.6046 22 1 8.3808 2.4242 0.7934 23 1 -0.3634 0.6076 0.8289 24 1 -0.3634 0.4140 -0.9405 25 1 -0.3633 -1.0216 0.1117 26 1 1.7211 -0.2702 1.9979 27 1 1.9186 -2.6710 -0.3397 28 1 0.4614 -2.1881 -1.2414 29 1 0.5575 -4.4170 -2.4232 30 1 2.0228 -4.8748 -3.3237 31 1 2.0476 -4.8357 -1.5442 32 1 4.0092 -3.3239 -1.6159 33 1 3.9903 -3.2902 -3.3961 34 1 5.1269 -1.2849 -2.4653 35 1 3.6500 -0.8394 -3.3530 36 1 3.7913 1.2300 -2.0471 37 1 3.5345 1.1623 -0.2870 38 1 6.0665 3.8019 -0.7167 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615468596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:14 Heat of formation + Delta-G solvation = -63.732656 kcal Electronic energy + Delta-G solvation = -16992.352047 eV Core-core repulsion = 14448.019185 eV Total energy + Delta-G solvation = -2544.332862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07925 -36.25104 -34.26084 -32.30894 -31.53805 -28.77430 -28.13090 -25.76344 -23.80859 -22.59799 -21.03676 -19.74667 -19.03683 -16.63266 -16.20211 -15.29670 -14.56582 -14.34626 -14.21110 -13.69876 -13.44885 -13.13568 -12.77511 -12.41230 -12.36582 -12.09752 -11.62691 -11.53438 -11.34698 -11.13977 -10.78892 -10.63504 -10.59918 -10.53175 -10.19747 -9.96081 -9.77963 -9.55815 -9.11587 -8.97877 -8.34848 -7.04280 -5.97532 -3.96909 3.34194 3.41388 3.47133 4.46999 4.77925 4.87592 5.11185 5.18728 5.29173 5.37428 5.42444 5.59352 5.68773 5.79367 5.86031 5.90352 5.98109 6.03281 6.11142 6.12662 6.21119 6.33054 6.40842 6.45656 6.54563 6.60774 6.74352 6.86358 6.95061 7.40140 7.43490 7.89118 8.18279 8.26624 8.34924 8.68060 9.11171 9.66516 11.13655 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.008638 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.029664 B = 3240.566317 C = 3943.332497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.064 0.936 4 O -0.543 6.543 5 C 0.094 3.906 6 H 0.034 0.966 7 C -0.099 4.099 8 C -0.095 4.095 9 H 0.059 0.941 10 C -0.142 4.142 11 C -0.111 4.111 12 C 0.064 3.936 13 N -0.520 5.520 14 C 0.190 3.810 15 C -0.499 4.499 16 H 0.063 0.937 17 C 0.053 3.947 18 N -0.902 5.902 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.363 0.637 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.015 0.985 36 H -0.015 1.015 37 H 0.037 0.963 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -8.664 -1.069 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.082 0.918 4 O -0.346 6.346 5 C -0.015 4.015 6 H 0.052 0.948 7 C -0.136 4.136 8 C -0.114 4.114 9 H 0.077 0.923 10 C -0.199 4.199 11 C -0.149 4.149 12 C -0.064 4.064 13 N -0.245 5.245 14 C 0.065 3.935 15 C -0.537 4.537 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.542 5.542 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.208 0.792 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.055 0.945 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.116 -9.133 -1.116 12.952 hybrid contribution 0.390 1.119 -0.204 1.202 sum -8.727 -8.014 -1.320 11.922 Atomic orbital electron populations 1.22584 0.97634 1.02152 1.01931 1.21896 0.90905 0.96264 0.86428 0.91817 1.86671 1.76989 1.56169 1.14783 1.21523 0.90820 0.95184 0.93977 0.94842 1.21600 0.98458 0.95246 0.98339 1.21202 0.96530 0.95345 0.98295 0.92252 1.21793 1.00396 0.96350 1.01405 1.21679 0.94497 0.97530 1.01158 1.21948 1.01134 0.92629 0.90706 1.61970 1.03923 1.21988 1.36648 1.19797 0.95705 0.82397 0.95623 1.21218 0.92161 0.92534 1.47816 0.91870 1.24979 0.98575 0.95450 0.95753 1.69968 1.35657 0.97277 1.51323 0.86468 0.85441 0.78072 0.77602 1.19670 1.21232 1.21077 0.92787 0.92096 0.91904 0.79241 0.90472 0.92802 0.93312 0.93208 0.92711 0.91415 0.92744 0.89893 0.96734 0.99774 0.94519 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.02 37.16 0.34 -2.15 16 2 C 0.10 1.84 2.84 -26.73 -0.08 1.76 16 3 H 0.06 1.28 6.06 -51.93 -0.31 0.96 16 4 O -0.54 -9.78 12.47 -35.23 -0.44 -10.22 16 5 C 0.09 1.78 1.74 -67.73 -0.12 1.66 16 6 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.10 -1.59 4.16 -26.65 -0.11 -1.70 16 8 C -0.10 -1.41 2.79 -90.49 -0.25 -1.67 16 9 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 10 C -0.14 -1.73 9.20 37.16 0.34 -1.39 16 11 C -0.11 -1.84 5.38 -26.65 -0.14 -1.98 16 12 C 0.06 1.31 5.29 -3.83 -0.02 1.29 16 13 N -0.52 -11.70 4.37 -228.12 -1.00 -12.70 16 14 C 0.19 5.05 4.43 -4.97 -0.02 5.03 16 15 C -0.50 -14.34 8.43 -34.44 -0.29 -14.63 16 16 H 0.06 1.82 7.08 -52.49 -0.37 1.45 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.80 6.82 -51.93 -0.35 0.44 16 26 H 0.36 4.93 9.08 45.56 0.41 5.34 16 27 H 0.08 1.37 7.63 -51.93 -0.40 0.97 16 28 H 0.05 0.76 6.64 -51.92 -0.35 0.42 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.84 6.66 -51.93 -0.35 1.49 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H -0.02 -0.44 8.13 -51.93 -0.42 -0.86 16 37 H 0.04 1.03 5.66 -51.93 -0.29 0.74 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -31.24 293.22 -7.55 -38.79 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.79 Total: 1.39 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.45 Total: -12.34 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.26 Total: -39.09 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.44 Total: -10.22 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.24 -7.55 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615468596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.944 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds