Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47168 * 2 1 4 4 O 1.42896 * 109.47540 * 120.00135 * 2 1 3 5 5 C 1.52997 * 109.46991 * 240.00306 * 2 1 3 6 6 H 1.09000 * 109.46683 * 58.93613 * 5 2 1 7 7 C 1.53033 * 109.46554 * 298.95626 * 5 2 1 8 8 C 1.53117 * 109.28332 * 180.80168 * 7 5 2 9 9 H 1.08997 * 109.52438 * 297.75504 * 8 7 5 10 10 C 1.53001 * 109.52484 * 177.55564 * 8 7 5 11 11 C 1.53124 * 109.15686 * 57.65718 * 8 7 5 12 12 C 1.53036 * 109.27679 * 302.34195 * 11 8 7 13 13 N 1.46846 * 109.46548 * 178.90081 * 5 2 1 14 14 C 1.46901 * 111.00246 * 305.85819 * 13 5 2 15 15 C 1.50704 * 109.47175 * 170.51606 * 14 13 5 16 16 H 1.07996 * 120.00177 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99519 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00370 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99717 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47241 * 120.00258 * 19 17 15 22 22 H 1.48504 * 109.47636 * 240.00490 * 19 17 15 23 23 H 1.09005 * 109.47374 * 306.24280 * 1 2 3 24 24 H 1.08993 * 109.47461 * 66.24199 * 1 2 3 25 25 H 1.09003 * 109.46962 * 186.24238 * 1 2 3 26 26 H 0.96695 * 114.00111 * 300.00186 * 4 2 1 27 27 H 1.09003 * 109.50569 * 300.74859 * 7 5 2 28 28 H 1.09008 * 109.50103 * 60.82357 * 7 5 2 29 29 H 1.09002 * 109.46395 * 60.00855 * 10 8 7 30 30 H 1.08998 * 109.47022 * 179.97438 * 10 8 7 31 31 H 1.08990 * 109.47409 * 300.00435 * 10 8 7 32 32 H 1.08994 * 109.50513 * 62.28734 * 11 8 7 33 33 H 1.09000 * 109.50524 * 182.40700 * 11 8 7 34 34 H 1.09001 * 109.46270 * 179.19379 * 12 11 8 35 35 H 1.08992 * 109.47004 * 299.17873 * 12 11 8 36 36 H 1.09000 * 109.47015 * 290.52363 * 14 13 5 37 37 H 1.09006 * 109.46697 * 50.52073 * 14 13 5 38 38 H 0.96996 * 119.99737 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6611 -0.2184 -2.1391 7 6 1.5513 -2.1713 -1.2361 8 6 2.0805 -2.8945 -2.4777 9 1 1.6821 -2.4188 -3.3738 10 6 1.6460 -4.3610 -2.4393 11 6 3.6096 -2.8142 -2.4924 12 6 4.0386 -1.3454 -2.4693 13 7 3.5082 -0.6982 -1.2625 14 6 4.0144 0.6751 -1.1359 15 6 5.5054 0.6428 -0.9195 16 1 6.0251 -0.3031 -0.8804 17 6 6.2062 1.8211 -0.7724 18 7 5.5734 2.9730 -0.8205 19 14 8.0545 1.7813 -0.5049 20 1 8.5224 0.3719 -0.4913 21 1 8.7298 2.5159 -1.6046 22 1 8.3808 2.4242 0.7934 23 1 -0.3634 0.6076 0.8289 24 1 -0.3634 0.4140 -0.9405 25 1 -0.3633 -1.0216 0.1117 26 1 1.7211 -0.2702 1.9979 27 1 1.9186 -2.6710 -0.3397 28 1 0.4614 -2.1881 -1.2414 29 1 0.5575 -4.4170 -2.4232 30 1 2.0228 -4.8748 -3.3237 31 1 2.0476 -4.8357 -1.5442 32 1 4.0092 -3.3239 -1.6159 33 1 3.9903 -3.2902 -3.3961 34 1 5.1269 -1.2849 -2.4653 35 1 3.6500 -0.8394 -3.3530 36 1 3.7913 1.2300 -2.0471 37 1 3.5345 1.1623 -0.2870 38 1 6.0665 3.8019 -0.7167 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615468596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -86.588969 kcal Electronic energy + Delta-G solvation = -16993.343171 eV Core-core repulsion = 14448.019185 eV Total energy + Delta-G solvation = -2545.323986 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58375 -37.63757 -35.97437 -34.28459 -33.00305 -30.25207 -29.64221 -27.51091 -25.19096 -24.37261 -22.70226 -21.09785 -20.53221 -18.53465 -17.91018 -17.00732 -16.34426 -15.96474 -15.57564 -15.17656 -14.98278 -14.42323 -14.28045 -14.02005 -13.88828 -13.59707 -13.17057 -12.81046 -12.80029 -12.65413 -12.57852 -12.35984 -12.11304 -12.01695 -11.91224 -11.53751 -11.35578 -10.98598 -10.88263 -10.68717 -10.44184 -8.89012 -8.20771 -6.29535 1.38267 1.39050 1.53001 2.39481 3.10803 3.24141 3.49877 3.84131 3.92959 3.98543 4.19978 4.28086 4.38088 4.43441 4.55375 4.62860 4.75781 4.85024 4.89661 4.91507 4.96941 5.04731 5.11184 5.17248 5.18157 5.27834 5.30548 5.35313 5.41581 5.47602 5.62578 5.69497 6.09626 6.43681 6.73765 6.87235 7.05195 7.39474 8.90539 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.008638 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.029664 B = 3240.566317 C = 3943.332497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 H 0.027 0.973 4 O -0.562 6.562 5 C 0.085 3.915 6 H 0.028 0.972 7 C -0.088 4.088 8 C -0.094 4.094 9 H 0.064 0.936 10 C -0.135 4.135 11 C -0.102 4.102 12 C 0.062 3.938 13 N -0.530 5.530 14 C 0.208 3.792 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.381 0.619 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.009 0.991 36 H -0.050 1.050 37 H 0.016 0.984 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -10.363 -1.138 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.045 3.955 3 H 0.044 0.956 4 O -0.368 6.368 5 C -0.024 4.024 6 H 0.046 0.954 7 C -0.126 4.126 8 C -0.113 4.113 9 H 0.083 0.917 10 C -0.192 4.192 11 C -0.140 4.140 12 C -0.066 4.066 13 N -0.255 5.255 14 C 0.082 3.918 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.228 0.772 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.027 0.973 36 H -0.032 1.032 37 H 0.034 0.966 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.842 -10.846 -1.178 14.693 hybrid contribution 0.585 1.681 -0.177 1.789 sum -9.256 -9.165 -1.354 13.096 Atomic orbital electron populations 1.22445 0.93739 1.03592 1.03153 1.21819 0.93817 0.93861 0.86022 0.95555 1.86606 1.77816 1.56542 1.15825 1.21755 0.88407 0.97730 0.94503 0.95376 1.21539 1.00010 0.92642 0.98371 1.21218 0.94797 0.97452 0.97790 0.91714 1.21720 1.01569 0.93865 1.02038 1.21625 0.96272 0.94122 1.01956 1.21985 0.99605 0.95345 0.89709 1.61930 1.06599 1.19142 1.37799 1.19417 0.94951 0.84465 0.93012 1.21489 0.93399 0.92546 1.48277 0.92485 1.25893 1.03766 0.94906 0.95120 1.70089 1.37745 0.97994 1.51795 0.85351 0.79113 0.78394 0.77867 1.18998 1.20251 1.20225 0.90983 0.91407 0.90356 0.77198 0.91942 0.89988 0.91558 0.91807 0.92890 0.92253 0.90322 0.92491 0.97315 1.03249 0.96575 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 9.02 71.98 0.65 -3.62 16 2 C 0.10 3.70 2.84 30.59 0.09 3.78 16 3 H 0.03 1.12 6.06 -2.39 -0.01 1.11 16 4 O -0.56 -20.24 12.47 -148.98 -1.86 -22.10 16 5 C 0.08 3.22 1.74 44.94 0.08 3.30 16 6 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 7 C -0.09 -2.66 4.16 30.64 0.13 -2.53 16 8 C -0.09 -2.56 2.79 -10.71 -0.03 -2.59 16 9 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 10 C -0.13 -2.79 9.20 71.98 0.66 -2.12 16 11 C -0.10 -3.26 5.38 30.65 0.16 -3.10 16 12 C 0.06 2.59 5.29 86.32 0.46 3.05 16 13 N -0.53 -24.64 4.37 -875.65 -3.83 -28.47 16 14 C 0.21 11.67 4.43 85.56 0.38 12.05 16 15 C -0.52 -30.95 8.43 25.60 0.22 -30.73 16 16 H 0.06 3.39 7.08 -2.91 -0.02 3.37 16 17 C 0.00 0.04 5.46 84.65 0.46 0.50 16 18 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 19 Si 0.97 45.88 29.54 68.60 2.03 47.90 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.08 1.73 6.82 -2.39 -0.02 1.71 16 26 H 0.38 10.22 9.08 -74.06 -0.67 9.55 16 27 H 0.06 2.11 7.63 -2.39 -0.02 2.09 16 28 H 0.08 2.04 6.64 -2.38 -0.02 2.02 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.63 6.66 -2.39 -0.02 2.62 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H -0.05 -3.07 8.13 -2.39 -0.02 -3.09 16 37 H 0.02 0.97 5.66 -2.38 -0.01 0.96 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -69.35 293.22 0.23 -69.13 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.35 Total: 13.05 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 3.25 Total: -22.03 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.54 Total: -85.95 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.86 Total: -22.10 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.35 0.23 -69.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615468596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.462 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds