Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47168 * 2 1 4 4 O 1.42897 * 109.46927 * 240.00522 * 2 1 3 5 5 C 1.52998 * 109.47586 * 120.00391 * 2 1 3 6 6 H 1.08996 * 109.46173 * 303.75542 * 5 2 1 7 7 C 1.53040 * 109.46046 * 63.72298 * 5 2 1 8 8 C 1.53120 * 109.27728 * 179.19537 * 7 5 2 9 9 H 1.09004 * 109.57519 * 182.41014 * 8 7 5 10 10 C 1.53001 * 109.52271 * 62.25112 * 8 7 5 11 11 C 1.53120 * 109.16092 * 302.34859 * 8 7 5 12 12 C 1.53032 * 109.27940 * 57.65236 * 11 8 7 13 13 N 1.46843 * 109.52471 * 300.82149 * 12 11 8 14 14 C 1.46907 * 110.99947 * 185.84053 * 13 12 11 15 15 C 1.50703 * 109.46869 * 300.01674 * 14 13 12 16 16 H 1.08000 * 120.00082 * 354.33015 * 15 14 13 17 17 C 1.37879 * 119.99588 * 174.33283 * 15 14 13 18 18 N 1.31515 * 120.00064 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99818 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47167 * 89.99528 * 19 17 15 21 21 H 1.48497 * 109.46920 * 209.99758 * 19 17 15 22 22 H 1.48506 * 109.47030 * 329.99802 * 19 17 15 23 23 H 1.09000 * 109.46554 * 299.35040 * 1 2 3 24 24 H 1.08994 * 109.47244 * 59.34551 * 1 2 3 25 25 H 1.09000 * 109.47260 * 179.35404 * 1 2 3 26 26 H 0.96698 * 114.00147 * 299.99933 * 4 2 1 27 27 H 1.09002 * 109.50361 * 299.13927 * 7 5 2 28 28 H 1.09002 * 109.50197 * 59.25627 * 7 5 2 29 29 H 1.09002 * 109.47401 * 300.32038 * 10 8 7 30 30 H 1.09007 * 109.46639 * 60.31415 * 10 8 7 31 31 H 1.08996 * 109.47098 * 180.31363 * 10 8 7 32 32 H 1.08994 * 109.50127 * 297.71026 * 11 8 7 33 33 H 1.09000 * 109.49800 * 177.59528 * 11 8 7 34 34 H 1.08997 * 109.46308 * 180.80385 * 12 11 8 35 35 H 1.09007 * 109.46413 * 60.83746 * 12 11 8 36 36 H 1.08995 * 109.47253 * 60.01880 * 14 13 12 37 37 H 1.09004 * 109.46965 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2491 6 1 1.6228 -0.2478 2.1378 7 6 1.6078 -2.1887 1.2029 8 6 2.1375 -2.9111 2.4447 9 1 1.8688 -3.9664 2.3956 10 6 1.5259 -2.2856 3.6999 11 6 3.6616 -2.7728 2.4948 12 6 4.0343 -1.2886 2.5035 13 7 3.5057 -0.6427 1.2954 14 6 3.9614 0.7507 1.2010 15 6 3.4847 1.5178 2.4074 16 1 2.8260 1.0462 3.1216 17 6 3.8896 2.8218 2.5993 18 7 4.6921 3.3959 1.7299 19 14 3.2993 3.7725 4.0951 20 1 4.2525 3.5732 5.2162 21 1 3.2204 5.2178 3.7634 22 1 1.9556 3.2822 4.4946 23 1 -0.3632 0.5037 0.8958 24 1 -0.3633 0.5239 -0.8840 25 1 -0.3634 -1.0276 -0.0116 26 1 1.7209 -1.5951 -1.2330 27 1 0.5195 -2.2470 1.1843 28 1 2.0134 -2.6594 0.3073 29 1 1.7930 -1.2298 3.7469 30 1 0.4409 -2.3844 3.6633 31 1 1.9077 -2.7968 4.5836 32 1 4.0994 -3.2528 1.6196 33 1 4.0405 -3.2486 3.3993 34 1 5.1193 -1.1867 2.5248 35 1 3.6076 -0.8122 3.3863 36 1 5.0504 0.7750 1.1620 37 1 3.5552 1.2055 0.2975 38 1 4.9772 4.3132 1.8651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615468597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = -63.179945 kcal Electronic energy + Delta-G solvation = -17436.367755 eV Core-core repulsion = 14892.058861 eV Total energy + Delta-G solvation = -2544.308895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.43069 -36.24304 -34.21834 -32.08905 -31.29321 -28.71663 -27.78813 -25.83257 -23.79746 -23.45505 -21.12167 -20.05931 -18.10908 -16.48160 -15.94154 -15.03249 -14.85338 -14.56704 -14.49217 -13.84925 -13.35582 -13.14765 -12.92376 -12.59642 -12.07558 -11.74175 -11.57990 -11.36159 -11.21590 -11.04871 -10.83817 -10.58593 -10.48561 -10.47165 -10.29041 -10.04262 -9.83923 -9.67940 -9.27318 -9.01021 -8.39009 -7.02267 -5.99930 -4.10357 3.26203 3.33649 3.35284 4.40336 4.81361 5.08249 5.15713 5.19453 5.29243 5.34416 5.58089 5.70943 5.73378 5.84347 5.89130 5.91897 5.99036 6.09220 6.15917 6.24898 6.30118 6.42197 6.46791 6.51425 6.55472 6.70014 6.75789 6.92497 6.99491 7.37263 7.59511 7.95211 8.12297 8.26343 8.35508 8.43257 9.01767 9.56456 11.03743 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.010559 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.592646 B = 2651.183638 C = 3056.136837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.115 0.885 4 O -0.552 6.552 5 C 0.065 3.935 6 H 0.052 0.948 7 C -0.113 4.113 8 C -0.087 4.087 9 H 0.059 0.941 10 C -0.152 4.152 11 C -0.113 4.113 12 C 0.063 3.937 13 N -0.527 5.527 14 C 0.183 3.817 15 C -0.549 4.549 16 H 0.054 0.946 17 C 0.066 3.934 18 N -0.888 5.888 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.359 0.641 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.032 0.968 37 H 0.036 0.964 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 -10.556 0.338 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.046 3.954 3 H 0.132 0.868 4 O -0.356 6.356 5 C -0.045 4.045 6 H 0.070 0.930 7 C -0.151 4.151 8 C -0.106 4.106 9 H 0.077 0.923 10 C -0.210 4.210 11 C -0.151 4.151 12 C -0.065 4.065 13 N -0.251 5.251 14 C 0.058 3.942 15 C -0.588 4.588 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.713 3.287 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.205 0.795 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.390 -10.045 -0.225 11.908 hybrid contribution -0.872 0.643 1.859 2.152 sum -7.262 -9.402 1.634 11.992 Atomic orbital electron populations 1.22532 0.97702 1.01563 1.02233 1.22100 0.91118 0.98030 0.84194 0.86771 1.86626 1.77484 1.27702 1.43812 1.22023 0.90920 0.93855 0.97674 0.93004 1.21726 0.99057 0.96405 0.97923 1.21063 0.96034 0.98450 0.95050 0.92257 1.21957 0.99705 1.02193 0.97104 1.21666 0.94785 0.97799 1.00817 1.21867 0.99435 0.92147 0.93072 1.62376 1.06710 1.19899 1.36085 1.19828 0.96460 0.81751 0.96193 1.21763 1.29904 0.97944 1.09193 0.92745 1.24952 0.94909 0.97678 0.96135 1.69950 1.33890 1.13484 1.35363 0.86716 0.79148 0.79400 0.83475 1.20688 1.21148 1.20031 0.91865 0.92403 0.92842 0.79530 0.92429 0.91709 0.91536 0.93427 0.93291 0.91921 0.92754 0.91954 0.94247 0.94952 0.94623 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.25 37.16 0.34 -2.35 16 2 C 0.10 1.92 2.97 -26.73 -0.08 1.85 16 3 H 0.11 2.54 6.01 -51.92 -0.31 2.23 16 4 O -0.55 -10.03 13.18 -35.23 -0.46 -10.49 16 5 C 0.06 1.20 1.11 -67.72 -0.08 1.13 16 6 H 0.05 1.07 5.18 -51.93 -0.27 0.80 16 7 C -0.11 -1.68 4.21 -26.65 -0.11 -1.79 16 8 C -0.09 -1.25 3.22 -90.50 -0.29 -1.54 16 9 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 10 C -0.15 -2.18 8.61 37.16 0.32 -1.86 16 11 C -0.11 -1.76 5.60 -26.65 -0.15 -1.91 16 12 C 0.06 1.24 4.79 -3.84 -0.02 1.23 16 13 N -0.53 -11.23 4.62 -228.12 -1.05 -12.28 16 14 C 0.18 4.72 4.71 -4.97 -0.02 4.70 16 15 C -0.55 -14.83 7.71 -34.44 -0.27 -15.09 16 16 H 0.05 1.46 5.86 -52.49 -0.31 1.15 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 19 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.67 6.58 -51.93 -0.34 0.33 16 26 H 0.36 5.12 7.21 45.56 0.33 5.45 16 27 H 0.06 0.76 6.58 -51.93 -0.34 0.42 16 28 H 0.06 0.93 6.69 -51.93 -0.35 0.58 16 29 H 0.07 1.13 4.92 -51.93 -0.26 0.87 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.28 8.12 -51.93 -0.42 0.85 16 35 H 0.04 0.83 5.15 -51.93 -0.27 0.57 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.99 5.88 -51.93 -0.31 0.68 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 281.23 15.07 4.24 4.24 Total: -1.00 -29.13 281.23 -7.37 -36.50 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.36 Total: 5.04 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.45 Total: -13.92 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.32 Total: -37.66 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.46 Total: -10.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.13 -7.37 -36.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615468597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.677 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds