Wall clock time and date at job start Sun Mar 29 2020 22:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47168 * 2 1 4 4 O 1.42897 * 109.46927 * 240.00522 * 2 1 3 5 5 C 1.52998 * 109.47586 * 120.00391 * 2 1 3 6 6 H 1.08996 * 109.46173 * 303.75542 * 5 2 1 7 7 C 1.53040 * 109.46046 * 63.72298 * 5 2 1 8 8 C 1.53120 * 109.27728 * 179.19537 * 7 5 2 9 9 H 1.09004 * 109.57519 * 182.41014 * 8 7 5 10 10 C 1.53001 * 109.52271 * 62.25112 * 8 7 5 11 11 C 1.53120 * 109.16092 * 302.34859 * 8 7 5 12 12 C 1.53032 * 109.27940 * 57.65236 * 11 8 7 13 13 N 1.46843 * 109.52471 * 300.82149 * 12 11 8 14 14 C 1.46907 * 110.99947 * 185.84053 * 13 12 11 15 15 C 1.50703 * 109.46869 * 300.01674 * 14 13 12 16 16 H 1.08000 * 120.00082 * 354.33015 * 15 14 13 17 17 C 1.37879 * 119.99588 * 174.33283 * 15 14 13 18 18 N 1.31515 * 120.00064 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99818 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47167 * 89.99528 * 19 17 15 21 21 H 1.48497 * 109.46920 * 209.99758 * 19 17 15 22 22 H 1.48506 * 109.47030 * 329.99802 * 19 17 15 23 23 H 1.09000 * 109.46554 * 299.35040 * 1 2 3 24 24 H 1.08994 * 109.47244 * 59.34551 * 1 2 3 25 25 H 1.09000 * 109.47260 * 179.35404 * 1 2 3 26 26 H 0.96698 * 114.00147 * 299.99933 * 4 2 1 27 27 H 1.09002 * 109.50361 * 299.13927 * 7 5 2 28 28 H 1.09002 * 109.50197 * 59.25627 * 7 5 2 29 29 H 1.09002 * 109.47401 * 300.32038 * 10 8 7 30 30 H 1.09007 * 109.46639 * 60.31415 * 10 8 7 31 31 H 1.08996 * 109.47098 * 180.31363 * 10 8 7 32 32 H 1.08994 * 109.50127 * 297.71026 * 11 8 7 33 33 H 1.09000 * 109.49800 * 177.59528 * 11 8 7 34 34 H 1.08997 * 109.46308 * 180.80385 * 12 11 8 35 35 H 1.09007 * 109.46413 * 60.83746 * 12 11 8 36 36 H 1.08995 * 109.47253 * 60.01880 * 14 13 12 37 37 H 1.09004 * 109.46965 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2491 6 1 1.6228 -0.2478 2.1378 7 6 1.6078 -2.1887 1.2029 8 6 2.1375 -2.9111 2.4447 9 1 1.8688 -3.9664 2.3956 10 6 1.5259 -2.2856 3.6999 11 6 3.6616 -2.7728 2.4948 12 6 4.0343 -1.2886 2.5035 13 7 3.5057 -0.6427 1.2954 14 6 3.9614 0.7507 1.2010 15 6 3.4847 1.5178 2.4074 16 1 2.8260 1.0462 3.1216 17 6 3.8896 2.8218 2.5993 18 7 4.6921 3.3959 1.7299 19 14 3.2993 3.7725 4.0951 20 1 4.2525 3.5732 5.2162 21 1 3.2204 5.2178 3.7634 22 1 1.9556 3.2822 4.4946 23 1 -0.3632 0.5037 0.8958 24 1 -0.3633 0.5239 -0.8840 25 1 -0.3634 -1.0276 -0.0116 26 1 1.7209 -1.5951 -1.2330 27 1 0.5195 -2.2470 1.1843 28 1 2.0134 -2.6594 0.3073 29 1 1.7930 -1.2298 3.7469 30 1 0.4409 -2.3844 3.6633 31 1 1.9077 -2.7968 4.5836 32 1 4.0994 -3.2528 1.6196 33 1 4.0405 -3.2486 3.3993 34 1 5.1193 -1.1867 2.5248 35 1 3.6076 -0.8122 3.3863 36 1 5.0504 0.7750 1.1620 37 1 3.5552 1.2055 0.2975 38 1 4.9772 4.3132 1.8651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615468597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:15 Heat of formation + Delta-G solvation = -84.683313 kcal Electronic energy + Delta-G solvation = -17437.300211 eV Core-core repulsion = 14892.058861 eV Total energy + Delta-G solvation = -2545.241351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90326 -37.65779 -35.95515 -34.04767 -32.71245 -30.09293 -29.36872 -27.48390 -25.32194 -25.08706 -22.79893 -21.53930 -19.62351 -18.24284 -17.62516 -16.79126 -16.32111 -16.11486 -16.00608 -15.42942 -14.76673 -14.65350 -14.28279 -14.14906 -13.63068 -13.22032 -13.09310 -13.00245 -12.88123 -12.50470 -12.48458 -12.25081 -11.99970 -11.90318 -11.84130 -11.70475 -11.45736 -11.25745 -10.76983 -10.62127 -10.42228 -8.86232 -8.12200 -6.34737 1.33833 1.33873 1.44407 2.35177 3.09124 3.30471 3.73640 3.87635 3.94039 4.10043 4.28903 4.34021 4.41105 4.54385 4.62985 4.66428 4.75325 4.82592 4.90704 4.96859 5.07666 5.13746 5.16772 5.19720 5.29205 5.32986 5.33852 5.41427 5.43978 5.52142 5.62425 5.78021 6.08875 6.34161 6.68886 6.88581 7.06478 7.36959 8.87491 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.010559 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.592646 B = 2651.183638 C = 3056.136837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H 0.062 0.938 4 O -0.567 6.567 5 C 0.067 3.933 6 H 0.030 0.970 7 C -0.107 4.107 8 C -0.085 4.085 9 H 0.095 0.905 10 C -0.150 4.150 11 C -0.104 4.104 12 C 0.062 3.938 13 N -0.529 5.529 14 C 0.199 3.801 15 C -0.549 4.549 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.378 0.622 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.021 0.979 36 H -0.007 1.007 37 H 0.009 0.991 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 -12.732 1.246 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.046 3.954 3 H 0.080 0.920 4 O -0.374 6.374 5 C -0.042 4.042 6 H 0.048 0.952 7 C -0.144 4.144 8 C -0.104 4.104 9 H 0.113 0.887 10 C -0.207 4.207 11 C -0.142 4.142 12 C -0.066 4.066 13 N -0.252 5.252 14 C 0.073 3.927 15 C -0.588 4.588 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.190 1.190 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.227 0.773 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.011 0.989 37 H 0.027 0.973 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.478 -12.254 0.686 14.916 hybrid contribution -0.189 1.289 1.527 2.007 sum -8.667 -10.965 2.212 14.150 Atomic orbital electron populations 1.22412 0.94330 1.03720 1.02420 1.21882 0.93621 0.95512 0.84368 0.91950 1.86583 1.78057 1.29317 1.43492 1.22100 0.88516 0.96925 0.96684 0.95187 1.21732 1.00844 0.92976 0.98883 1.21117 0.94423 1.00321 0.94507 0.88698 1.21922 1.00982 1.00013 0.97795 1.21619 0.96472 0.94042 1.02085 1.21908 0.98047 0.95154 0.91489 1.62321 1.09063 1.16785 1.37079 1.19412 0.93771 0.84661 0.94891 1.21947 1.29415 0.98198 1.09250 0.92672 1.25822 0.95057 0.98809 0.99170 1.70088 1.35286 1.13905 1.37416 0.85624 0.78983 0.77873 0.79658 1.20040 1.20681 1.19000 0.92087 0.91860 0.89607 0.77283 0.89594 0.90652 0.95055 0.91602 0.92066 0.91440 0.90731 0.94053 0.96087 0.98897 0.97274 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 9.25 71.98 0.67 -4.06 16 2 C 0.11 3.90 2.97 30.59 0.09 3.99 16 3 H 0.06 2.96 6.01 -2.38 -0.01 2.94 16 4 O -0.57 -20.27 13.18 -148.98 -1.96 -22.23 16 5 C 0.07 2.45 1.11 44.94 0.05 2.50 16 6 H 0.03 1.25 5.18 -2.39 -0.01 1.24 16 7 C -0.11 -2.80 4.21 30.65 0.13 -2.67 16 8 C -0.09 -2.11 3.22 -10.71 -0.03 -2.14 16 9 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 10 C -0.15 -3.84 8.61 71.98 0.62 -3.22 16 11 C -0.10 -3.02 5.60 30.65 0.17 -2.85 16 12 C 0.06 2.49 4.79 86.32 0.41 2.90 16 13 N -0.53 -23.18 4.62 -875.65 -4.05 -27.23 16 14 C 0.20 10.94 4.71 85.56 0.40 11.34 16 15 C -0.55 -30.92 7.71 25.60 0.20 -30.72 16 16 H 0.06 3.05 5.86 -2.91 -0.02 3.03 16 17 C 0.01 0.61 5.46 84.66 0.46 1.07 16 18 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 19 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.09 1.81 6.58 -2.39 -0.02 1.80 16 26 H 0.38 9.87 7.21 -74.06 -0.53 9.33 16 27 H 0.09 1.82 6.58 -2.39 -0.02 1.81 16 28 H 0.07 1.86 6.69 -2.39 -0.02 1.84 16 29 H 0.03 1.02 4.92 -2.39 -0.01 1.01 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 35 H 0.02 0.91 5.15 -2.38 -0.01 0.90 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.01 0.55 5.88 -2.39 -0.01 0.54 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -66.48 281.23 -0.02 -66.50 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.51 Total: 16.67 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.17 Total: -23.86 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -3.76 Total: -83.66 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.96 Total: -22.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.48 -0.02 -66.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615468597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.182 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds