Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46693 * 2 1 4 4 O 1.42895 * 109.47365 * 240.00042 * 2 1 3 5 5 C 1.53004 * 109.46845 * 119.99792 * 2 1 3 6 6 H 1.09001 * 109.45650 * 185.38424 * 5 2 1 7 7 C 1.53029 * 109.46312 * 65.40331 * 5 2 1 8 8 C 1.53122 * 109.31234 * 180.78145 * 7 5 2 9 9 H 1.09006 * 109.51941 * 297.77161 * 8 7 5 10 10 C 1.52999 * 109.52552 * 177.57920 * 8 7 5 11 11 C 1.53201 * 109.11507 * 57.63752 * 8 7 5 12 12 C 1.53039 * 109.29854 * 302.36996 * 11 8 7 13 13 N 1.46843 * 109.46467 * 305.34548 * 5 2 1 14 14 C 1.46905 * 111.00252 * 305.86028 * 13 5 2 15 15 C 1.50702 * 109.47068 * 168.33500 * 14 13 5 16 16 H 1.07995 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99851 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00053 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47231 * 89.99472 * 19 17 15 21 21 H 1.48503 * 109.46846 * 209.99792 * 19 17 15 22 22 H 1.48496 * 109.46948 * 329.99360 * 19 17 15 23 23 H 1.09002 * 109.47690 * 301.86811 * 1 2 3 24 24 H 1.09003 * 109.47413 * 61.87700 * 1 2 3 25 25 H 1.09006 * 109.47060 * 181.87031 * 1 2 3 26 26 H 0.96695 * 114.00091 * 59.99745 * 4 2 1 27 27 H 1.09000 * 109.50410 * 300.74319 * 7 5 2 28 28 H 1.09001 * 109.50548 * 60.82262 * 7 5 2 29 29 H 1.09000 * 109.46970 * 60.00136 * 10 8 7 30 30 H 1.08992 * 109.47074 * 180.02562 * 10 8 7 31 31 H 1.09005 * 109.47076 * 300.00182 * 10 8 7 32 32 H 1.09001 * 109.49555 * 182.42484 * 11 8 7 33 33 H 1.08998 * 109.52838 * 62.33834 * 11 8 7 34 34 H 1.09002 * 109.46641 * 299.16491 * 12 11 8 35 35 H 1.09000 * 109.45577 * 179.18935 * 12 11 8 36 36 H 1.08994 * 109.46847 * 288.33395 * 14 13 5 37 37 H 1.08995 * 109.46953 * 48.33441 * 14 13 5 38 38 H 0.96994 * 119.99889 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 3.1257 -0.6384 1.2986 7 6 1.6437 -2.1978 1.1831 8 6 2.1386 -2.9120 2.4439 9 1 3.2267 -2.8626 2.4870 10 6 1.6928 -4.3753 2.4111 11 6 1.5457 -2.2223 3.6766 12 6 1.9448 -0.7449 3.6706 13 7 1.4479 -0.1073 2.4447 14 6 1.6919 1.3411 2.4684 15 6 0.8407 1.9764 3.5375 16 1 0.1839 1.3655 4.1389 17 6 0.8998 3.3379 3.7472 18 7 1.6993 4.0820 3.0146 19 14 -0.1547 4.1253 5.0729 20 1 0.5950 4.1460 6.3546 21 1 -0.4936 5.5154 4.6751 22 1 -1.4040 3.3406 5.2427 23 1 -0.3634 0.5426 0.8727 24 1 -0.3634 0.4844 -0.9063 25 1 -0.3633 -1.0272 0.0335 26 1 1.7210 -0.2701 -1.9979 27 1 0.5587 -2.2810 1.1200 28 1 2.0956 -2.6569 0.3038 29 1 2.1107 -4.8627 1.5302 30 1 2.0452 -4.8826 3.3090 31 1 0.6045 -4.4227 2.3707 32 1 1.9281 -2.6989 4.5793 33 1 0.4591 -2.3058 3.6535 34 1 3.0310 -0.6619 3.7084 35 1 1.5122 -0.2484 4.5392 36 1 2.7440 1.5288 2.6824 37 1 1.4364 1.7685 1.4989 38 1 1.7411 5.0397 3.1624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615468599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = -65.598199 kcal Electronic energy + Delta-G solvation = -17026.234471 eV Core-core repulsion = 14481.820713 eV Total energy + Delta-G solvation = -2544.413758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16504 -36.40347 -34.40202 -32.40439 -31.31649 -28.48957 -28.27951 -25.81120 -23.78877 -22.70932 -21.26972 -19.83102 -18.62650 -16.86647 -16.16331 -15.23175 -14.75704 -14.33830 -14.22568 -13.89801 -13.58067 -13.19882 -12.50217 -12.44826 -12.14629 -12.13051 -11.58780 -11.40892 -11.26612 -11.20850 -10.86799 -10.71341 -10.53692 -10.50960 -10.21090 -10.05236 -9.78319 -9.59281 -9.20338 -9.07076 -8.40836 -7.19617 -6.03345 -4.04357 3.30889 3.37358 3.41455 4.37399 4.50372 5.05730 5.13384 5.24744 5.30305 5.34871 5.52396 5.60589 5.80843 5.87526 5.89465 5.98717 6.04756 6.08567 6.14132 6.29228 6.37982 6.41183 6.47195 6.56408 6.58814 6.69633 6.80872 6.88671 6.94132 7.33039 7.37275 7.81364 8.00652 8.10831 8.23912 8.56925 9.03823 9.59843 11.07399 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027318 B = 0.008643 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.716795 B = 3238.831587 C = 3927.667597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 H 0.061 0.939 4 O -0.575 6.575 5 C 0.095 3.905 6 H 0.030 0.970 7 C -0.096 4.096 8 C -0.096 4.096 9 H 0.060 0.940 10 C -0.142 4.142 11 C -0.111 4.111 12 C 0.067 3.933 13 N -0.526 5.526 14 C 0.185 3.815 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.090 0.910 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.372 0.628 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.084 0.916 36 H -0.011 1.011 37 H 0.037 0.963 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -11.113 -3.810 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.046 3.954 3 H 0.079 0.921 4 O -0.379 6.379 5 C -0.014 4.014 6 H 0.048 0.952 7 C -0.134 4.134 8 C -0.114 4.114 9 H 0.079 0.921 10 C -0.199 4.199 11 C -0.149 4.149 12 C -0.062 4.062 13 N -0.252 5.252 14 C 0.060 3.940 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.109 0.891 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.218 0.782 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.102 0.898 36 H 0.006 0.994 37 H 0.055 0.945 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.698 -11.382 -3.409 11.902 hybrid contribution 0.161 1.185 0.327 1.239 sum -0.537 -10.198 -3.082 10.667 Atomic orbital electron populations 1.22373 0.95794 1.02201 1.02552 1.21850 0.93875 0.95009 0.84662 0.92109 1.86413 1.77452 1.58099 1.15985 1.21325 0.95850 0.93977 0.90247 0.95221 1.21580 1.01380 0.94014 0.96449 1.21224 0.99657 0.94427 0.96117 0.92125 1.21788 1.01185 0.96080 1.00875 1.21704 1.01187 0.95597 0.96418 1.21926 0.96539 0.93170 0.94528 1.62037 1.57485 1.06291 0.99394 1.19853 0.95086 0.80866 0.98173 1.21160 1.23561 0.92027 1.17591 0.91841 1.24986 0.95782 0.97326 0.96525 1.69957 1.38188 1.05762 1.39978 0.86527 0.80751 0.78521 0.81802 1.20792 1.21309 1.19778 0.89145 0.94103 0.92580 0.78234 0.91422 0.91840 0.93182 0.93209 0.92824 0.92642 0.91482 0.96423 0.89778 0.99366 0.94496 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.95 37.16 0.33 -2.60 16 2 C 0.10 1.88 2.86 -26.73 -0.08 1.81 16 3 H 0.06 1.22 6.40 -51.93 -0.33 0.89 16 4 O -0.57 -9.08 12.44 -35.23 -0.44 -9.51 16 5 C 0.10 1.81 1.91 -67.73 -0.13 1.68 16 6 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.10 -1.57 4.22 -26.65 -0.11 -1.69 16 8 C -0.10 -1.42 2.79 -90.45 -0.25 -1.67 16 9 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 10 C -0.14 -1.73 9.21 37.16 0.34 -1.39 16 11 C -0.11 -1.77 5.38 -26.61 -0.14 -1.91 16 12 C 0.07 1.31 5.30 -3.83 -0.02 1.29 16 13 N -0.53 -11.18 3.63 -228.13 -0.83 -12.01 16 14 C 0.19 4.73 4.02 -4.97 -0.02 4.71 16 15 C -0.50 -13.89 8.44 -34.44 -0.29 -14.18 16 16 H 0.06 1.73 7.24 -52.49 -0.38 1.35 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.09 1.81 6.90 -51.93 -0.36 1.45 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.90 6.48 -51.93 -0.34 0.57 16 26 H 0.37 4.24 9.08 45.56 0.41 4.65 16 27 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 28 H 0.06 1.02 7.58 -51.93 -0.39 0.62 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 1.77 6.82 -51.93 -0.35 1.42 16 36 H -0.01 -0.32 8.11 -51.93 -0.42 -0.74 16 37 H 0.04 0.98 5.35 -51.93 -0.28 0.71 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -29.37 290.81 -7.35 -36.73 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.72 Total: 2.21 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -0.47 Total: -12.52 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.09 Total: -37.73 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.44 Total: -9.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.37 -7.35 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615468599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.870 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds