Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46693 * 2 1 4 4 O 1.42895 * 109.47365 * 240.00042 * 2 1 3 5 5 C 1.53004 * 109.46845 * 119.99792 * 2 1 3 6 6 H 1.09001 * 109.45650 * 185.38424 * 5 2 1 7 7 C 1.53029 * 109.46312 * 65.40331 * 5 2 1 8 8 C 1.53122 * 109.31234 * 180.78145 * 7 5 2 9 9 H 1.09006 * 109.51941 * 297.77161 * 8 7 5 10 10 C 1.52999 * 109.52552 * 177.57920 * 8 7 5 11 11 C 1.53201 * 109.11507 * 57.63752 * 8 7 5 12 12 C 1.53039 * 109.29854 * 302.36996 * 11 8 7 13 13 N 1.46843 * 109.46467 * 305.34548 * 5 2 1 14 14 C 1.46905 * 111.00252 * 305.86028 * 13 5 2 15 15 C 1.50702 * 109.47068 * 168.33500 * 14 13 5 16 16 H 1.07995 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99851 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00053 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47231 * 89.99472 * 19 17 15 21 21 H 1.48503 * 109.46846 * 209.99792 * 19 17 15 22 22 H 1.48496 * 109.46948 * 329.99360 * 19 17 15 23 23 H 1.09002 * 109.47690 * 301.86811 * 1 2 3 24 24 H 1.09003 * 109.47413 * 61.87700 * 1 2 3 25 25 H 1.09006 * 109.47060 * 181.87031 * 1 2 3 26 26 H 0.96695 * 114.00091 * 59.99745 * 4 2 1 27 27 H 1.09000 * 109.50410 * 300.74319 * 7 5 2 28 28 H 1.09001 * 109.50548 * 60.82262 * 7 5 2 29 29 H 1.09000 * 109.46970 * 60.00136 * 10 8 7 30 30 H 1.08992 * 109.47074 * 180.02562 * 10 8 7 31 31 H 1.09005 * 109.47076 * 300.00182 * 10 8 7 32 32 H 1.09001 * 109.49555 * 182.42484 * 11 8 7 33 33 H 1.08998 * 109.52838 * 62.33834 * 11 8 7 34 34 H 1.09002 * 109.46641 * 299.16491 * 12 11 8 35 35 H 1.09000 * 109.45577 * 179.18935 * 12 11 8 36 36 H 1.08994 * 109.46847 * 288.33395 * 14 13 5 37 37 H 1.08995 * 109.46953 * 48.33441 * 14 13 5 38 38 H 0.96994 * 119.99889 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 3.1257 -0.6384 1.2986 7 6 1.6437 -2.1978 1.1831 8 6 2.1386 -2.9120 2.4439 9 1 3.2267 -2.8626 2.4870 10 6 1.6928 -4.3753 2.4111 11 6 1.5457 -2.2223 3.6766 12 6 1.9448 -0.7449 3.6706 13 7 1.4479 -0.1073 2.4447 14 6 1.6919 1.3411 2.4684 15 6 0.8407 1.9764 3.5375 16 1 0.1839 1.3655 4.1389 17 6 0.8998 3.3379 3.7472 18 7 1.6993 4.0820 3.0146 19 14 -0.1547 4.1253 5.0729 20 1 0.5950 4.1460 6.3546 21 1 -0.4936 5.5154 4.6751 22 1 -1.4040 3.3406 5.2427 23 1 -0.3634 0.5426 0.8727 24 1 -0.3634 0.4844 -0.9063 25 1 -0.3633 -1.0272 0.0335 26 1 1.7210 -0.2701 -1.9979 27 1 0.5587 -2.2810 1.1200 28 1 2.0956 -2.6569 0.3038 29 1 2.1107 -4.8627 1.5302 30 1 2.0452 -4.8826 3.3090 31 1 0.6045 -4.4227 2.3707 32 1 1.9281 -2.6989 4.5793 33 1 0.4591 -2.3058 3.6535 34 1 3.0310 -0.6619 3.7084 35 1 1.5122 -0.2484 4.5392 36 1 2.7440 1.5288 2.6824 37 1 1.4364 1.7685 1.4989 38 1 1.7411 5.0397 3.1624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615468599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = -86.053240 kcal Electronic energy + Delta-G solvation = -17027.121468 eV Core-core repulsion = 14481.820713 eV Total energy + Delta-G solvation = -2545.300755 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67845 -37.76316 -36.03259 -34.35403 -32.80362 -30.09962 -29.72448 -27.54466 -25.22600 -24.41722 -22.97270 -21.15071 -20.15784 -18.58133 -17.99274 -16.94635 -16.37958 -15.92857 -15.65516 -15.35091 -15.22645 -14.47489 -14.18212 -14.02160 -13.76765 -13.46285 -13.25993 -12.79939 -12.73967 -12.65161 -12.57381 -12.38977 -12.09581 -12.07204 -11.92129 -11.53595 -11.33812 -11.00932 -10.93758 -10.73962 -10.48119 -9.01117 -8.19742 -6.29139 1.40936 1.41772 1.53554 2.40009 2.98561 3.12973 3.61147 3.81828 3.95583 3.98877 4.10200 4.23978 4.35940 4.51097 4.56827 4.70114 4.75664 4.82320 4.89226 4.95933 5.03548 5.08347 5.13470 5.16663 5.18954 5.28555 5.31693 5.40553 5.46444 5.50856 5.60671 5.68848 6.07268 6.35793 6.65368 6.87312 6.89556 7.40254 8.91341 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027318 B = 0.008643 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.716795 B = 3238.831587 C = 3927.667597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.111 3.889 3 H 0.030 0.970 4 O -0.573 6.573 5 C 0.089 3.911 6 H 0.008 0.992 7 C -0.086 4.086 8 C -0.095 4.095 9 H 0.056 0.944 10 C -0.134 4.134 11 C -0.101 4.101 12 C 0.063 3.937 13 N -0.522 5.522 14 C 0.202 3.798 15 C -0.517 4.517 16 H 0.063 0.937 17 C 0.002 3.998 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.263 1.263 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.393 0.607 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.006 0.994 35 H 0.065 0.935 36 H -0.051 1.051 37 H 0.021 0.979 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -12.903 -3.643 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.052 3.948 3 H 0.048 0.952 4 O -0.381 6.381 5 C -0.020 4.020 6 H 0.026 0.974 7 C -0.124 4.124 8 C -0.113 4.113 9 H 0.075 0.925 10 C -0.192 4.192 11 C -0.139 4.139 12 C -0.065 4.065 13 N -0.248 5.248 14 C 0.076 3.924 15 C -0.556 4.556 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.188 1.188 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.242 0.758 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.083 0.917 36 H -0.034 1.034 37 H 0.039 0.961 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.877 -13.195 -3.260 13.721 hybrid contribution 0.591 1.738 0.204 1.848 sum -1.286 -11.457 -3.056 11.927 Atomic orbital electron populations 1.22239 0.94685 1.02779 1.02131 1.21570 0.94537 0.93348 0.85310 0.95242 1.86367 1.77527 1.57819 1.16373 1.21461 0.94497 0.96203 0.89801 0.97443 1.21514 1.01537 0.91558 0.97753 1.21230 0.99367 0.96201 0.94544 0.92529 1.21716 1.01567 0.93666 1.02216 1.21644 1.01384 0.92558 0.98278 1.21999 0.95668 0.95809 0.93065 1.62014 1.57688 1.04038 1.01081 1.19505 0.92270 0.83797 0.96845 1.21440 1.23634 0.92531 1.17970 0.91839 1.25891 0.97011 0.97912 0.98813 1.70090 1.39729 1.06119 1.41701 0.85413 0.79137 0.77502 0.78765 1.20064 1.20819 1.18752 0.92478 0.91825 0.91140 0.75780 0.91110 0.90979 0.92097 0.91727 0.92302 0.90239 0.91304 0.97593 0.91665 1.03385 0.96093 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.38 8.95 71.98 0.64 -4.74 16 2 C 0.11 4.05 2.86 30.60 0.09 4.13 16 3 H 0.03 1.25 6.40 -2.39 -0.02 1.24 16 4 O -0.57 -17.34 12.44 -148.98 -1.85 -19.19 16 5 C 0.09 3.45 1.91 44.94 0.09 3.53 16 6 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 7 C -0.09 -2.66 4.22 30.64 0.13 -2.53 16 8 C -0.09 -2.61 2.79 -10.69 -0.03 -2.64 16 9 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 10 C -0.13 -2.78 9.21 71.98 0.66 -2.12 16 11 C -0.10 -3.04 5.38 30.67 0.17 -2.87 16 12 C 0.06 2.51 5.30 86.33 0.46 2.96 16 13 N -0.52 -22.87 3.63 -875.66 -3.18 -26.05 16 14 C 0.20 10.86 4.02 85.56 0.34 11.20 16 15 C -0.52 -29.29 8.44 25.60 0.22 -29.08 16 16 H 0.06 3.52 7.24 -2.91 -0.02 3.50 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.94 -56.59 13.29 21.45 0.28 -56.31 16 19 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H 0.06 2.31 6.90 -2.39 -0.02 2.29 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.14 6.48 -2.38 -0.02 2.12 16 26 H 0.39 8.20 9.08 -74.06 -0.67 7.52 16 27 H 0.07 2.16 6.51 -2.39 -0.02 2.15 16 28 H 0.07 2.13 7.58 -2.39 -0.02 2.12 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.06 2.81 6.82 -2.39 -0.02 2.80 16 36 H -0.05 -3.11 8.11 -2.39 -0.02 -3.13 16 37 H 0.02 1.19 5.35 -2.39 -0.01 1.18 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.60 290.81 0.85 -63.75 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.35 Total: 13.03 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.22 Total: -21.59 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.90 Total: -82.36 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.85 Total: -19.19 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -64.60 0.85 -63.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615468599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.304 kcal (2) G-P(sol) polarization free energy of solvation -64.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds