Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47432 * 2 1 4 4 H 1.09001 * 109.50723 * 55.09033 * 3 2 1 5 5 C 1.53097 * 109.50949 * 175.21478 * 3 2 1 6 6 N 1.47010 * 109.26134 * 176.78280 * 5 3 2 7 7 C 1.46897 * 111.00436 * 177.61159 * 6 5 3 8 8 H 1.08996 * 109.47340 * 67.54476 * 7 6 5 9 9 C 1.53007 * 109.46967 * 307.54333 * 7 6 5 10 10 C 1.52998 * 109.47362 * 187.54852 * 7 6 5 11 11 C 1.50696 * 109.47369 * 185.26495 * 10 7 6 12 12 H 1.08002 * 119.99611 * 1.74363 * 11 10 7 13 13 C 1.37874 * 120.00425 * 181.75275 * 11 10 7 14 14 N 1.31513 * 119.99784 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00254 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47114 * 269.99361 * 15 13 11 17 17 H 1.48501 * 109.47221 * 149.99219 * 15 13 11 18 18 H 1.48502 * 109.47202 * 29.99401 * 15 13 11 19 19 C 1.47012 * 110.75278 * 301.38784 * 6 5 3 20 20 C 1.53102 * 109.25997 * 58.61480 * 19 6 5 21 21 O 1.43014 * 109.50493 * 295.00227 * 3 2 1 22 22 H 1.08999 * 109.46926 * 300.00123 * 1 2 3 23 23 H 1.08999 * 109.46751 * 59.99986 * 1 2 3 24 24 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47185 * 239.99973 * 2 1 3 26 26 H 1.09005 * 109.47419 * 120.00043 * 2 1 3 27 27 H 1.08999 * 109.50447 * 56.85046 * 5 3 2 28 28 H 1.08997 * 109.50657 * 296.72336 * 5 3 2 29 29 H 1.09000 * 109.47239 * 179.97438 * 9 7 6 30 30 H 1.08996 * 109.47207 * 300.00224 * 9 7 6 31 31 H 1.08999 * 109.46501 * 60.00036 * 9 7 6 32 32 H 1.08995 * 109.47229 * 65.25952 * 10 7 6 33 33 H 1.09008 * 109.47020 * 305.26279 * 10 7 6 34 34 H 0.97000 * 120.00377 * 0.02562 * 14 13 11 35 35 H 1.09008 * 109.50879 * 178.54575 * 19 6 5 36 36 H 1.08999 * 109.50826 * 298.67835 * 19 6 5 37 37 H 1.09000 * 109.50736 * 63.08522 * 20 19 6 38 38 H 1.08999 * 109.50889 * 183.21921 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9816 0.8426 5 6 3.5663 1.4451 0.1204 6 7 4.0565 2.8288 0.0423 7 6 5.5149 2.8810 0.2107 8 1 5.9967 2.4110 -0.6466 9 6 5.9078 2.1363 1.4882 10 6 5.9647 4.3399 0.3121 11 6 7.4699 4.3997 0.3548 12 1 8.0486 3.4904 0.2853 13 6 8.1082 5.6150 0.4827 14 7 7.4035 6.7222 0.5670 15 14 9.9740 5.6890 0.5363 16 1 10.4334 5.5804 1.9443 17 1 10.4349 6.9792 -0.0367 18 1 10.5369 4.5663 -0.2560 19 6 3.6497 3.4549 -1.2241 20 6 2.1226 3.4322 -1.3310 21 8 1.6621 2.0826 -1.2217 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.9965 0.8601 -0.6926 28 1 3.8567 1.0094 1.0763 29 1 6.9899 2.1746 1.6129 30 1 5.4259 2.6063 2.3455 31 1 5.5873 1.0970 1.4159 32 1 5.5575 4.7833 1.2207 33 1 5.6036 4.8926 -0.5553 34 1 6.4347 6.6838 0.5396 35 1 4.0010 4.4865 -1.2495 36 1 4.0812 2.9021 -2.0586 37 1 1.6925 4.0297 -0.5271 38 1 1.8189 3.8436 -2.2936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616015724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = -62.633509 kcal Electronic energy + Delta-G solvation = -16575.100737 eV Core-core repulsion = 14030.815537 eV Total energy + Delta-G solvation = -2544.285199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59521 -36.51165 -33.97358 -33.31338 -30.96210 -29.86345 -26.74064 -26.35832 -24.04070 -22.70738 -21.76373 -20.38636 -19.31174 -16.89283 -16.35120 -16.13061 -14.81540 -14.62331 -14.40505 -14.03084 -13.71930 -13.64195 -13.24875 -13.06087 -12.27374 -12.01489 -11.92459 -11.42671 -11.36600 -11.21506 -11.01757 -10.92823 -10.86616 -10.76402 -10.26601 -10.11827 -10.00992 -9.56331 -9.27458 -8.55807 -8.30455 -7.85759 -6.35080 -4.03661 3.43292 3.46778 3.62286 3.86544 4.20723 4.56576 4.85213 5.00841 5.14840 5.27428 5.36103 5.40259 5.43049 5.49392 5.57361 5.71006 5.81419 5.84820 5.87960 5.93307 6.02850 6.04854 6.18482 6.19998 6.25952 6.27005 6.57187 6.76787 6.97524 7.25305 7.30917 7.39001 7.62873 7.69349 8.24561 8.47122 8.89522 9.67906 11.05628 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054488 B = 0.005737 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.746720 B = 4879.254752 C = 5211.933108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.093 3.907 4 H 0.064 0.936 5 C 0.020 3.980 6 N -0.535 5.535 7 C 0.092 3.908 8 H 0.029 0.971 9 C -0.132 4.132 10 C 0.021 3.979 11 C -0.598 4.598 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.913 5.913 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.285 1.285 18 H -0.290 1.290 19 C 0.017 3.983 20 C 0.066 3.934 21 O -0.386 6.386 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.016 0.984 33 H 0.007 0.993 34 H 0.269 0.731 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -11.003 -1.304 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.082 0.918 5 C -0.108 4.108 6 N -0.260 5.260 7 C -0.015 4.015 8 H 0.047 0.953 9 C -0.190 4.190 10 C -0.016 4.016 11 C -0.637 4.637 12 H 0.067 0.933 13 C -0.188 4.188 14 N -0.550 5.550 15 Si 0.899 3.101 16 H -0.215 1.215 17 H -0.210 1.210 18 H -0.216 1.216 19 C -0.111 4.111 20 C -0.010 4.010 21 O -0.305 6.305 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.789 -9.792 -0.936 13.877 hybrid contribution -0.661 -1.339 -0.619 1.616 sum -10.450 -11.130 -1.556 15.346 Atomic orbital electron populations 1.21692 0.95264 1.01212 1.02283 1.21521 0.96643 0.94605 1.02561 1.22201 0.93364 0.93537 0.87350 0.91836 1.22828 0.95178 0.91121 1.01720 1.62346 1.14880 1.15602 1.33180 1.21717 0.83347 1.00049 0.96378 0.95325 1.21801 1.02297 0.97215 0.97661 1.19266 0.96441 0.89493 0.96439 1.22023 0.91291 0.95281 1.55132 0.93321 1.25797 1.06916 0.92218 0.93874 1.70740 1.08619 1.29008 1.46593 0.83529 0.74390 0.75562 0.76656 1.21461 1.21024 1.21573 1.22778 0.95715 1.01696 0.90906 1.22653 0.93298 0.83305 1.01785 1.87906 1.76735 1.26698 1.39152 0.92910 0.92016 0.92974 0.91367 0.90668 0.94791 0.89613 0.91254 0.92702 0.94683 0.96604 0.97467 0.92031 0.88860 0.94667 0.92536 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.81 37.16 0.36 -1.10 16 2 C -0.12 -1.28 5.65 -26.73 -0.15 -1.44 16 3 C 0.09 1.30 2.81 -26.68 -0.07 1.23 16 4 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 5 C 0.02 0.31 4.42 -3.71 -0.02 0.30 16 6 N -0.53 -10.00 4.59 -226.33 -1.04 -11.04 16 7 C 0.09 1.97 2.09 -67.71 -0.14 1.83 16 8 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 9 C -0.13 -2.57 8.52 37.16 0.32 -2.25 16 10 C 0.02 0.54 3.77 -27.89 -0.11 0.43 16 11 C -0.60 -16.90 8.38 -34.44 -0.29 -17.19 16 12 H 0.05 1.36 7.14 -52.49 -0.37 0.98 16 13 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 14 N -0.91 -28.03 13.65 55.43 0.76 -27.27 16 15 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.02 0.30 5.42 -3.71 -0.02 0.28 16 20 C 0.07 0.98 7.01 37.21 0.26 1.24 16 21 O -0.39 -5.87 10.01 -35.23 -0.35 -6.22 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.27 6.06 -51.93 -0.31 0.96 16 29 H 0.07 1.43 7.00 -51.93 -0.36 1.06 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.57 6.27 -51.93 -0.33 0.25 16 32 H 0.02 0.43 7.94 -51.93 -0.41 0.02 16 33 H 0.01 0.19 6.13 -51.92 -0.32 -0.12 16 34 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 35 H 0.09 1.77 6.19 -51.92 -0.32 1.44 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -30.51 294.14 -7.82 -38.32 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.58 Total: -2.22 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 0.05 Total: -16.31 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.28 Total: -38.31 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.35 Total: -6.22 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.51 -7.82 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds