Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47432 * 2 1 4 4 H 1.09001 * 109.50723 * 55.09033 * 3 2 1 5 5 C 1.53097 * 109.50949 * 175.21478 * 3 2 1 6 6 N 1.47010 * 109.26134 * 176.78280 * 5 3 2 7 7 C 1.46897 * 111.00436 * 177.61159 * 6 5 3 8 8 H 1.08996 * 109.47340 * 67.54476 * 7 6 5 9 9 C 1.53007 * 109.46967 * 307.54333 * 7 6 5 10 10 C 1.52998 * 109.47362 * 187.54852 * 7 6 5 11 11 C 1.50696 * 109.47369 * 185.26495 * 10 7 6 12 12 H 1.08002 * 119.99611 * 1.74363 * 11 10 7 13 13 C 1.37874 * 120.00425 * 181.75275 * 11 10 7 14 14 N 1.31513 * 119.99784 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00254 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47114 * 269.99361 * 15 13 11 17 17 H 1.48501 * 109.47221 * 149.99219 * 15 13 11 18 18 H 1.48502 * 109.47202 * 29.99401 * 15 13 11 19 19 C 1.47012 * 110.75278 * 301.38784 * 6 5 3 20 20 C 1.53102 * 109.25997 * 58.61480 * 19 6 5 21 21 O 1.43014 * 109.50493 * 295.00227 * 3 2 1 22 22 H 1.08999 * 109.46926 * 300.00123 * 1 2 3 23 23 H 1.08999 * 109.46751 * 59.99986 * 1 2 3 24 24 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47185 * 239.99973 * 2 1 3 26 26 H 1.09005 * 109.47419 * 120.00043 * 2 1 3 27 27 H 1.08999 * 109.50447 * 56.85046 * 5 3 2 28 28 H 1.08997 * 109.50657 * 296.72336 * 5 3 2 29 29 H 1.09000 * 109.47239 * 179.97438 * 9 7 6 30 30 H 1.08996 * 109.47207 * 300.00224 * 9 7 6 31 31 H 1.08999 * 109.46501 * 60.00036 * 9 7 6 32 32 H 1.08995 * 109.47229 * 65.25952 * 10 7 6 33 33 H 1.09008 * 109.47020 * 305.26279 * 10 7 6 34 34 H 0.97000 * 120.00377 * 0.02562 * 14 13 11 35 35 H 1.09008 * 109.50879 * 178.54575 * 19 6 5 36 36 H 1.08999 * 109.50826 * 298.67835 * 19 6 5 37 37 H 1.09000 * 109.50736 * 63.08522 * 20 19 6 38 38 H 1.08999 * 109.50889 * 183.21921 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9816 0.8426 5 6 3.5663 1.4451 0.1204 6 7 4.0565 2.8288 0.0423 7 6 5.5149 2.8810 0.2107 8 1 5.9967 2.4110 -0.6466 9 6 5.9078 2.1363 1.4882 10 6 5.9647 4.3399 0.3121 11 6 7.4699 4.3997 0.3548 12 1 8.0486 3.4904 0.2853 13 6 8.1082 5.6150 0.4827 14 7 7.4035 6.7222 0.5670 15 14 9.9740 5.6890 0.5363 16 1 10.4334 5.5804 1.9443 17 1 10.4349 6.9792 -0.0367 18 1 10.5369 4.5663 -0.2560 19 6 3.6497 3.4549 -1.2241 20 6 2.1226 3.4322 -1.3310 21 8 1.6621 2.0826 -1.2217 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.9965 0.8601 -0.6926 28 1 3.8567 1.0094 1.0763 29 1 6.9899 2.1746 1.6129 30 1 5.4259 2.6063 2.3455 31 1 5.5873 1.0970 1.4159 32 1 5.5575 4.7833 1.2207 33 1 5.6036 4.8926 -0.5553 34 1 6.4347 6.6838 0.5396 35 1 4.0010 4.4865 -1.2495 36 1 4.0812 2.9021 -2.0586 37 1 1.6925 4.0297 -0.5271 38 1 1.8189 3.8436 -2.2936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616015724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = -82.654086 kcal Electronic energy + Delta-G solvation = -16575.968894 eV Core-core repulsion = 14030.815537 eV Total energy + Delta-G solvation = -2545.153357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90953 -38.03758 -35.35237 -34.97923 -32.67665 -31.08336 -28.57474 -27.70930 -25.65996 -24.39033 -22.95077 -21.62889 -20.96814 -18.98297 -17.60691 -17.48241 -16.19794 -16.02720 -15.71239 -15.69278 -15.51336 -14.81063 -14.60937 -14.23280 -14.08873 -13.66996 -13.20872 -13.05362 -12.86303 -12.65217 -12.52901 -12.36344 -12.05003 -11.99152 -11.93144 -11.83077 -11.35892 -11.26942 -10.76619 -10.55096 -10.51528 -9.38213 -8.68013 -6.37506 1.51703 1.60939 1.78123 2.54081 2.70839 2.85408 3.16914 3.72909 3.92474 3.95330 4.06686 4.10843 4.18047 4.26807 4.39447 4.44121 4.48895 4.56186 4.58997 4.75587 4.76218 4.88869 4.90744 5.01386 5.05580 5.10170 5.19522 5.23951 5.26702 5.44492 5.45360 5.83853 6.05626 6.14185 6.18879 6.19422 6.58490 7.43714 8.72730 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054488 B = 0.005737 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.746720 B = 4879.254752 C = 5211.933108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.093 3.907 4 H 0.063 0.937 5 C 0.020 3.980 6 N -0.543 5.543 7 C 0.100 3.900 8 H 0.016 0.984 9 C -0.125 4.125 10 C 0.028 3.972 11 C -0.609 4.609 12 H 0.051 0.949 13 C -0.038 4.038 14 N -0.938 5.938 15 Si 1.119 2.881 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.017 3.983 20 C 0.074 3.926 21 O -0.391 6.391 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.070 0.930 32 H -0.011 1.011 33 H -0.012 1.012 34 H 0.254 0.746 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -12.836 -1.054 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.035 3.965 4 H 0.081 0.919 5 C -0.107 4.107 6 N -0.269 5.269 7 C -0.008 4.008 8 H 0.034 0.966 9 C -0.182 4.182 10 C -0.010 4.010 11 C -0.647 4.647 12 H 0.070 0.930 13 C -0.235 4.235 14 N -0.576 5.576 15 Si 0.940 3.060 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.111 4.111 20 C -0.003 4.003 21 O -0.310 6.310 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.028 -11.652 -0.686 15.388 hybrid contribution -0.655 -0.782 -0.711 1.244 sum -10.683 -12.434 -1.397 16.453 Atomic orbital electron populations 1.21668 0.94318 1.02308 1.01869 1.21548 0.97414 0.92476 1.03457 1.22352 0.91932 0.95328 0.86879 0.91946 1.22955 0.96504 0.89007 1.02265 1.62290 1.12850 1.17901 1.33822 1.21455 0.85291 0.96987 0.97023 0.96606 1.21711 1.01318 0.98986 0.96186 1.19124 0.95391 0.92296 0.94162 1.22395 0.92639 0.95427 1.54275 0.93038 1.27377 1.11334 0.91930 0.92850 1.70881 1.07873 1.30012 1.48816 0.82912 0.69043 0.76190 0.77833 1.19695 1.20946 1.19461 1.22784 0.97936 1.00133 0.90286 1.22651 0.90840 0.83575 1.03241 1.87918 1.76541 1.26664 1.39868 0.92550 0.93215 0.91155 0.91483 0.88747 0.95037 0.88314 0.92665 0.93101 0.91162 0.99234 0.99383 0.93628 0.91157 0.95305 0.92378 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.81 71.98 0.71 -1.78 16 2 C -0.11 -2.16 5.65 30.59 0.17 -1.98 16 3 C 0.09 2.40 2.81 30.63 0.09 2.49 16 4 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 5 C 0.02 0.61 4.42 86.31 0.38 0.99 16 6 N -0.54 -20.19 4.59 -869.99 -4.00 -24.19 16 7 C 0.10 4.31 2.09 44.92 0.09 4.41 16 8 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 9 C -0.12 -4.72 8.52 71.98 0.61 -4.10 16 10 C 0.03 1.47 3.77 29.85 0.11 1.58 16 11 C -0.61 -34.90 8.38 25.60 0.21 -34.68 16 12 H 0.05 2.87 7.14 -2.91 -0.02 2.85 16 13 C -0.04 -2.20 5.46 84.65 0.46 -1.73 16 14 N -0.94 -58.92 13.65 21.45 0.29 -58.63 16 15 Si 1.12 50.65 29.90 68.60 2.05 52.70 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 19 C 0.02 0.60 5.42 86.32 0.47 1.07 16 20 C 0.07 2.11 7.01 72.02 0.50 2.61 16 21 O -0.39 -11.21 10.01 -148.98 -1.49 -12.70 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 2.66 6.06 -2.39 -0.01 2.64 16 29 H 0.05 2.23 7.00 -2.39 -0.02 2.21 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.14 6.27 -2.39 -0.01 2.13 16 32 H -0.01 -0.62 7.94 -2.39 -0.02 -0.64 16 33 H -0.01 -0.68 6.13 -2.38 -0.01 -0.69 16 34 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 35 H 0.07 2.79 6.19 -2.38 -0.01 2.78 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -66.08 294.14 1.78 -64.30 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.10 Total: 9.66 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.82 Total: -31.14 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.70 Total: -82.82 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.49 Total: -12.70 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -66.08 1.78 -64.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.351 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds