Wall clock time and date at job start Sun Mar 29 2020 21:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46896 * 2 1 4 4 H 1.08997 * 109.50622 * 54.91036 * 3 2 1 5 5 C 1.53096 * 109.50612 * 175.00371 * 3 2 1 6 6 N 1.47011 * 109.25842 * 176.78749 * 5 3 2 7 7 C 1.46899 * 111.00045 * 177.60613 * 6 5 3 8 8 H 1.09002 * 109.47043 * 299.99639 * 7 6 5 9 9 C 1.53002 * 109.47394 * 59.99694 * 7 6 5 10 10 C 1.52997 * 109.47254 * 179.97438 * 7 6 5 11 11 C 1.50705 * 109.47390 * 64.99638 * 10 7 6 12 12 H 1.08000 * 119.99498 * 0.02562 * 11 10 7 13 13 C 1.37870 * 120.00441 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47142 * 60.00110 * 15 13 11 17 17 H 1.48498 * 109.46868 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47038 * 299.99640 * 15 13 11 19 19 C 1.47023 * 110.74829 * 301.37817 * 6 5 3 20 20 C 1.53095 * 109.25811 * 58.62000 * 19 6 5 21 21 O 1.43017 * 109.50607 * 294.78258 * 3 2 1 22 22 H 1.08994 * 109.47400 * 59.99984 * 1 2 3 23 23 H 1.09005 * 109.46907 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47369 * 299.99936 * 1 2 3 25 25 H 1.08994 * 109.46766 * 239.99997 * 2 1 3 26 26 H 1.08994 * 109.47400 * 120.00016 * 2 1 3 27 27 H 1.08990 * 109.50728 * 56.84318 * 5 3 2 28 28 H 1.09003 * 109.50262 * 296.71498 * 5 3 2 29 29 H 1.09000 * 109.46986 * 300.00133 * 9 7 6 30 30 H 1.09002 * 109.47075 * 59.99404 * 9 7 6 31 31 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.47630 * 184.99901 * 10 7 6 33 33 H 1.09004 * 109.47346 * 305.00031 * 10 7 6 34 34 H 0.97002 * 119.99729 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.50383 * 178.55013 * 19 6 5 36 36 H 1.08991 * 109.50502 * 298.68491 * 19 6 5 37 37 H 1.08992 * 109.50744 * 183.21330 * 20 19 6 38 38 H 1.09003 * 109.54286 * 63.10241 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9825 0.8407 5 6 3.5657 1.4453 0.1257 6 7 4.0561 2.8291 0.0477 7 6 5.5139 2.8815 0.2212 8 1 5.7788 2.4713 1.1957 9 6 6.1884 2.0593 -0.8787 10 6 5.9860 4.3342 0.1335 11 6 5.4185 5.1176 1.2891 12 1 4.7848 4.6281 2.0138 13 6 5.7082 6.4590 1.4211 14 7 6.4803 7.0549 0.5388 15 14 5.0053 7.4298 2.8539 16 1 5.4723 6.8345 4.1317 17 1 5.4634 8.8398 2.7686 18 1 3.5219 7.3868 2.8006 19 6 3.6538 3.4535 -1.2210 20 6 2.1271 3.4306 -1.3333 21 8 1.6664 2.0811 -1.2239 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.9988 0.8594 -0.6849 28 1 3.8528 1.0109 1.0833 29 1 5.8521 1.0243 -0.8166 30 1 5.9234 2.4694 -1.8532 31 1 7.2700 2.0978 -0.7497 32 1 7.0749 4.3655 0.1732 33 1 5.6440 4.7714 -0.8046 34 1 6.6844 7.9986 0.6319 35 1 4.0051 4.4850 -1.2464 36 1 4.0882 2.8997 -2.0531 37 1 1.8268 3.8408 -2.2974 38 1 1.6936 4.0292 -0.5321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616015725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:34 Heat of formation + Delta-G solvation = -55.218865 kcal Electronic energy + Delta-G solvation = -16822.040933 eV Core-core repulsion = 14278.077256 eV Total energy + Delta-G solvation = -2543.963676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.49651 -36.46911 -33.80441 -32.79450 -30.73460 -29.66941 -27.34694 -26.10686 -23.86653 -22.95372 -21.79697 -20.34350 -18.63812 -16.31845 -16.12921 -15.86113 -14.82554 -14.56050 -14.42526 -14.14174 -13.67620 -13.58050 -13.10835 -12.63720 -12.16357 -11.92522 -11.77176 -11.63816 -11.38262 -11.07656 -10.92080 -10.89427 -10.70185 -10.61856 -10.39010 -10.00284 -9.93456 -9.33419 -9.07188 -8.97221 -8.28335 -7.52416 -5.91711 -3.90282 3.39101 3.42976 3.46579 4.04410 4.42957 4.54201 5.00868 5.13692 5.27450 5.44091 5.47312 5.53258 5.60119 5.64879 5.73547 5.80990 5.89889 5.94739 5.95698 5.99377 6.05220 6.09329 6.19542 6.36466 6.37428 6.45939 6.61084 6.70917 6.93352 7.48813 7.50707 7.65286 7.85839 7.96461 8.09477 8.54191 9.15879 9.71957 11.20030 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.007432 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.642873 B = 3766.492119 C = 4144.781331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.064 0.936 5 C 0.020 3.980 6 N -0.510 5.510 7 C 0.086 3.914 8 H 0.071 0.929 9 C -0.184 4.184 10 C 0.027 3.973 11 C -0.494 4.494 12 H 0.060 0.940 13 C 0.052 3.948 14 N -0.903 5.903 15 Si 0.890 3.110 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.278 1.278 19 C 0.018 3.982 20 C 0.065 3.935 21 O -0.388 6.388 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.090 0.910 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 -11.526 -2.603 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.036 3.964 4 H 0.082 0.918 5 C -0.109 4.109 6 N -0.234 5.234 7 C -0.022 4.022 8 H 0.089 0.911 9 C -0.243 4.243 10 C -0.010 4.010 11 C -0.533 4.533 12 H 0.078 0.922 13 C -0.148 4.148 14 N -0.544 5.544 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.204 1.204 19 C -0.110 4.110 20 C -0.011 4.011 21 O -0.308 6.308 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.175 -11.169 -2.392 14.046 hybrid contribution 0.320 0.352 0.293 0.558 sum -7.856 -10.817 -2.100 13.532 Atomic orbital electron populations 1.21694 0.95390 1.01053 1.02314 1.21512 0.96552 0.94833 1.02355 1.22160 0.93504 0.93302 0.87455 0.91824 1.22790 0.95277 0.91717 1.01102 1.62358 1.13657 1.14268 1.33083 1.21932 0.84407 0.99430 0.96418 0.91099 1.22515 1.01446 0.99443 1.00912 1.19264 0.96073 0.87919 0.97765 1.21140 1.28840 0.93760 1.09535 0.92168 1.25005 0.95544 0.97971 0.96269 1.69954 1.37699 1.11001 1.35729 0.86687 0.79465 0.78842 0.83131 1.20474 1.21615 1.20363 1.22801 0.95258 1.02374 0.90607 1.22668 0.93845 0.82973 1.01661 1.87878 1.77052 1.27005 1.38827 0.92023 0.93122 0.92913 0.91513 0.90807 0.94599 0.90604 0.93958 0.93032 0.92484 0.96246 0.96119 0.93208 0.87809 0.95050 0.89194 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.81 37.16 0.36 -1.22 16 2 C -0.11 -1.35 5.64 -26.73 -0.15 -1.50 16 3 C 0.09 1.40 2.80 -26.68 -0.07 1.32 16 4 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.02 0.32 4.48 -3.71 -0.02 0.30 16 6 N -0.51 -9.88 4.47 -226.34 -1.01 -10.89 16 7 C 0.09 1.77 2.37 -67.71 -0.16 1.61 16 8 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 9 C -0.18 -3.25 8.49 37.16 0.32 -2.93 16 10 C 0.03 0.67 4.14 -27.88 -0.12 0.56 16 11 C -0.49 -13.74 8.84 -34.44 -0.30 -14.05 16 12 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.02 0.33 4.88 -3.71 -0.02 0.31 16 20 C 0.07 1.07 7.01 37.21 0.26 1.33 16 21 O -0.39 -6.31 10.02 -35.23 -0.35 -6.66 16 22 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.58 6.44 -51.93 -0.33 0.24 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.67 6.46 -51.93 -0.34 0.33 16 30 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.55 6.02 -51.93 -0.31 0.24 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 2.19 6.00 -51.93 -0.31 1.88 16 36 H 0.03 0.57 6.52 -51.93 -0.34 0.23 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -29.60 293.99 -7.79 -37.39 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.57 Total: -2.05 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 0.00 Total: -12.89 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.28 Total: -37.14 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.35 Total: -6.66 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.60 -7.79 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.833 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds