Wall clock time and date at job start Sun Mar 29 2020 21:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46896 * 2 1 4 4 H 1.08997 * 109.50622 * 54.91036 * 3 2 1 5 5 C 1.53096 * 109.50612 * 175.00371 * 3 2 1 6 6 N 1.47011 * 109.25842 * 176.78749 * 5 3 2 7 7 C 1.46899 * 111.00045 * 177.60613 * 6 5 3 8 8 H 1.09002 * 109.47043 * 299.99639 * 7 6 5 9 9 C 1.53002 * 109.47394 * 59.99694 * 7 6 5 10 10 C 1.52997 * 109.47254 * 179.97438 * 7 6 5 11 11 C 1.50705 * 109.47390 * 64.99638 * 10 7 6 12 12 H 1.08000 * 119.99498 * 0.02562 * 11 10 7 13 13 C 1.37870 * 120.00441 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47142 * 60.00110 * 15 13 11 17 17 H 1.48498 * 109.46868 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47038 * 299.99640 * 15 13 11 19 19 C 1.47023 * 110.74829 * 301.37817 * 6 5 3 20 20 C 1.53095 * 109.25811 * 58.62000 * 19 6 5 21 21 O 1.43017 * 109.50607 * 294.78258 * 3 2 1 22 22 H 1.08994 * 109.47400 * 59.99984 * 1 2 3 23 23 H 1.09005 * 109.46907 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47369 * 299.99936 * 1 2 3 25 25 H 1.08994 * 109.46766 * 239.99997 * 2 1 3 26 26 H 1.08994 * 109.47400 * 120.00016 * 2 1 3 27 27 H 1.08990 * 109.50728 * 56.84318 * 5 3 2 28 28 H 1.09003 * 109.50262 * 296.71498 * 5 3 2 29 29 H 1.09000 * 109.46986 * 300.00133 * 9 7 6 30 30 H 1.09002 * 109.47075 * 59.99404 * 9 7 6 31 31 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.47630 * 184.99901 * 10 7 6 33 33 H 1.09004 * 109.47346 * 305.00031 * 10 7 6 34 34 H 0.97002 * 119.99729 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.50383 * 178.55013 * 19 6 5 36 36 H 1.08991 * 109.50502 * 298.68491 * 19 6 5 37 37 H 1.08992 * 109.50744 * 183.21330 * 20 19 6 38 38 H 1.09003 * 109.54286 * 63.10241 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9825 0.8407 5 6 3.5657 1.4453 0.1257 6 7 4.0561 2.8291 0.0477 7 6 5.5139 2.8815 0.2212 8 1 5.7788 2.4713 1.1957 9 6 6.1884 2.0593 -0.8787 10 6 5.9860 4.3342 0.1335 11 6 5.4185 5.1176 1.2891 12 1 4.7848 4.6281 2.0138 13 6 5.7082 6.4590 1.4211 14 7 6.4803 7.0549 0.5388 15 14 5.0053 7.4298 2.8539 16 1 5.4723 6.8345 4.1317 17 1 5.4634 8.8398 2.7686 18 1 3.5219 7.3868 2.8006 19 6 3.6538 3.4535 -1.2210 20 6 2.1271 3.4306 -1.3333 21 8 1.6664 2.0811 -1.2239 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.9988 0.8594 -0.6849 28 1 3.8528 1.0109 1.0833 29 1 5.8521 1.0243 -0.8166 30 1 5.9234 2.4694 -1.8532 31 1 7.2700 2.0978 -0.7497 32 1 7.0749 4.3655 0.1732 33 1 5.6440 4.7714 -0.8046 34 1 6.6844 7.9986 0.6319 35 1 4.0051 4.4850 -1.2464 36 1 4.0882 2.8997 -2.0531 37 1 1.8268 3.8408 -2.2974 38 1 1.6936 4.0292 -0.5321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616015725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:34 Heat of formation + Delta-G solvation = -74.266886 kcal Electronic energy + Delta-G solvation = -16822.866917 eV Core-core repulsion = 14278.077256 eV Total energy + Delta-G solvation = -2544.789661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86584 -37.95153 -34.89706 -34.84420 -32.40266 -30.90607 -29.21422 -27.43394 -25.41417 -24.64707 -23.06931 -21.63149 -20.21115 -18.37672 -17.49177 -17.28204 -16.54505 -16.14785 -15.79784 -15.58042 -15.01622 -14.75592 -14.53364 -13.95558 -13.90184 -13.59010 -13.23909 -13.00523 -12.87038 -12.72374 -12.47194 -12.33801 -12.05755 -11.98149 -11.85617 -11.78935 -11.30845 -11.11263 -11.01595 -10.48830 -10.45885 -9.01655 -8.11499 -6.16938 1.41532 1.43603 1.51302 2.46194 2.82153 3.02206 3.24405 3.84086 4.05577 4.11505 4.18080 4.23362 4.27865 4.39532 4.46183 4.51067 4.56222 4.65579 4.68561 4.84606 4.90651 4.97088 5.02322 5.09058 5.12940 5.15358 5.21128 5.31436 5.46519 5.48603 5.67679 5.87678 6.21085 6.26150 6.35555 6.46222 6.96459 7.49335 9.00147 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.007432 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.642873 B = 3766.492119 C = 4144.781331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.091 3.909 4 H 0.054 0.946 5 C 0.022 3.978 6 N -0.530 5.530 7 C 0.093 3.907 8 H 0.067 0.933 9 C -0.174 4.174 10 C 0.033 3.967 11 C -0.503 4.503 12 H 0.057 0.943 13 C -0.002 4.002 14 N -0.938 5.938 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.023 3.977 20 C 0.071 3.929 21 O -0.390 6.390 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.059 0.941 32 H -0.008 1.008 33 H 0.001 0.999 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.113 0.887 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 -13.039 -2.050 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C 0.034 3.966 4 H 0.072 0.928 5 C -0.106 4.106 6 N -0.254 5.254 7 C -0.015 4.015 8 H 0.085 0.915 9 C -0.232 4.232 10 C -0.004 4.004 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.580 5.580 15 Si 0.781 3.219 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.105 4.105 20 C -0.005 4.005 21 O -0.310 6.310 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.011 0.989 33 H 0.020 0.980 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.401 -12.702 -1.836 15.909 hybrid contribution 0.705 0.803 0.114 1.074 sum -8.696 -11.900 -1.722 14.839 Atomic orbital electron populations 1.21674 0.94607 1.02216 1.01723 1.21526 0.97185 0.92527 1.03441 1.22323 0.92597 0.95081 0.86643 0.92807 1.22873 0.96102 0.89675 1.01924 1.62272 1.12710 1.16737 1.33659 1.21655 0.85840 0.96586 0.97427 0.91466 1.22378 1.01348 1.00173 0.99347 1.19116 0.94199 0.91021 0.96078 1.21433 1.28458 0.94270 1.09995 0.92524 1.25826 0.95933 0.99159 0.98895 1.70081 1.39064 1.11281 1.37578 0.85649 0.78858 0.77351 0.80025 1.19566 1.21252 1.19727 1.22685 0.96873 1.00374 0.90587 1.22627 0.92001 0.83341 1.02580 1.87891 1.76908 1.26640 1.39528 0.93255 0.91104 0.92884 0.91189 0.88908 0.93890 0.89523 0.91438 0.93463 0.92221 0.98924 0.98033 0.93201 0.91208 0.94542 0.86934 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.81 71.98 0.71 -2.02 16 2 C -0.11 -2.25 5.64 30.60 0.17 -2.08 16 3 C 0.09 2.54 2.80 30.63 0.09 2.62 16 4 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.02 0.67 4.48 86.31 0.39 1.06 16 6 N -0.53 -20.23 4.47 -870.00 -3.89 -24.12 16 7 C 0.09 3.82 2.37 44.92 0.11 3.92 16 8 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 9 C -0.17 -5.92 8.49 71.98 0.61 -5.31 16 10 C 0.03 1.71 4.14 29.85 0.12 1.83 16 11 C -0.50 -28.46 8.84 25.60 0.23 -28.23 16 12 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 13 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 14 N -0.94 -57.22 13.29 21.44 0.28 -56.93 16 15 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 C 0.02 0.86 4.88 86.31 0.42 1.28 16 20 C 0.07 2.27 7.01 72.01 0.50 2.78 16 21 O -0.39 -11.99 10.02 -148.98 -1.49 -13.48 16 22 H 0.05 1.05 7.83 -2.39 -0.02 1.03 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.25 6.44 -2.39 -0.02 1.24 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 1.96 6.46 -2.39 -0.02 1.94 16 30 H 0.05 1.64 6.54 -2.39 -0.02 1.62 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.00 0.08 6.02 -2.39 -0.01 0.07 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.07 3.06 6.00 -2.39 -0.01 3.05 16 36 H 0.04 1.30 6.52 -2.39 -0.02 1.29 16 37 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -63.40 293.99 1.74 -61.66 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.00 Total: 9.37 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.81 Total: -23.78 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -3.60 Total: -81.06 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.49 Total: -13.48 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.40 1.74 -61.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.607 kcal (2) G-P(sol) polarization free energy of solvation -63.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds