Wall clock time and date at job start Sun Mar 29 2020 21:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 H 1.08997 * 109.50896 * 304.91281 * 3 2 1 5 5 C 1.53099 * 109.53960 * 184.80280 * 3 2 1 6 6 N 1.47015 * 109.25532 * 183.19718 * 5 3 2 7 7 C 1.46901 * 110.99927 * 182.39333 * 6 5 3 8 8 H 1.08998 * 109.47073 * 55.61353 * 7 6 5 9 9 C 1.53004 * 109.47268 * 175.61709 * 7 6 5 10 10 C 1.53006 * 109.47179 * 295.61508 * 7 6 5 11 11 C 1.50695 * 109.47150 * 174.42772 * 10 7 6 12 12 H 1.08002 * 120.00220 * 355.60462 * 11 10 7 13 13 C 1.37879 * 120.00035 * 175.59614 * 11 10 7 14 14 N 1.31515 * 119.99715 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00264 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46714 * 60.00473 * 15 13 11 17 17 H 1.48496 * 109.46958 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46969 * 300.00492 * 15 13 11 19 19 C 1.47007 * 110.75489 * 58.61806 * 6 5 3 20 20 C 1.53101 * 109.25839 * 301.38061 * 19 6 5 21 21 O 1.43015 * 109.50568 * 64.99985 * 3 2 1 22 22 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.46942 * 300.00051 * 1 2 3 24 24 H 1.09003 * 109.46878 * 60.00225 * 1 2 3 25 25 H 1.09003 * 109.47000 * 239.99597 * 2 1 3 26 26 H 1.08998 * 109.46460 * 119.99976 * 2 1 3 27 27 H 1.08998 * 109.50639 * 63.25922 * 5 3 2 28 28 H 1.09003 * 109.50641 * 303.12974 * 5 3 2 29 29 H 1.08999 * 109.47218 * 299.99735 * 9 7 6 30 30 H 1.08996 * 109.46922 * 60.00086 * 9 7 6 31 31 H 1.09001 * 109.46939 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.46772 * 54.43212 * 10 7 6 33 33 H 1.08998 * 109.47321 * 294.43778 * 10 7 6 34 34 H 0.97000 * 120.00049 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.51266 * 61.31566 * 19 6 5 36 36 H 1.09009 * 109.50685 * 181.40596 * 19 6 5 37 37 H 1.08992 * 109.50982 * 176.78253 * 20 19 6 38 38 H 1.09005 * 109.50589 * 296.87438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9817 -0.8425 5 6 3.5662 1.4460 -0.1208 6 7 4.0555 2.8301 -0.0431 7 6 5.5138 2.8832 -0.2120 8 1 5.7887 2.4015 -1.1503 9 6 5.9719 4.3429 -0.2347 10 6 6.1890 2.1550 0.9520 11 6 7.6749 2.0901 0.7099 12 1 8.0878 2.4610 -0.2166 13 6 8.5074 1.5574 1.6712 14 7 8.0046 1.1054 2.7993 15 14 10.3495 1.4776 1.3715 16 1 10.8766 2.8499 1.1611 17 1 11.0165 0.8658 2.5487 18 1 10.6196 0.6534 0.1662 19 6 3.6488 3.4562 1.2233 20 6 2.1217 3.4325 1.3306 21 8 1.6621 2.0826 1.2218 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 3.8567 1.0103 -1.0768 28 1 3.9970 0.8615 0.6922 29 1 5.4910 4.8618 -1.0640 30 1 5.6970 4.8245 0.7036 31 1 7.0540 4.3822 -0.3596 32 1 5.7889 1.1439 1.0290 33 1 5.9950 2.6939 1.8793 34 1 8.5902 0.7302 3.4755 35 1 4.0808 2.9038 2.0577 36 1 4.0001 4.4878 1.2487 37 1 1.8181 3.8439 2.2932 38 1 1.6911 4.0302 0.5272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616015726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:36 Heat of formation + Delta-G solvation = -59.607019 kcal Electronic energy + Delta-G solvation = -16725.134389 eV Core-core repulsion = 14180.980428 eV Total energy + Delta-G solvation = -2544.153961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49406 -36.46115 -33.78863 -32.90546 -30.82589 -29.69047 -27.10607 -26.17170 -23.65101 -23.24722 -21.79793 -20.41144 -18.59518 -16.60071 -16.19793 -15.72568 -14.74655 -14.61138 -14.55947 -13.84466 -13.61715 -13.53521 -13.23645 -12.63247 -12.23069 -11.89895 -11.84045 -11.52179 -11.13783 -10.99091 -10.91403 -10.85362 -10.80150 -10.63083 -10.34808 -10.15442 -9.80018 -9.62340 -9.21374 -9.10836 -8.36945 -7.52686 -6.02492 -4.05069 3.30876 3.35691 3.37748 4.02177 4.37888 4.47572 5.03666 5.17648 5.30181 5.32941 5.43559 5.51884 5.58927 5.59963 5.75055 5.88688 5.91496 6.01495 6.05908 6.14039 6.20707 6.23987 6.34773 6.38038 6.42922 6.50371 6.78916 6.91070 6.98470 7.44010 7.51650 7.54274 7.67259 7.82402 7.97798 8.40371 9.00927 9.58604 11.08594 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035423 B = 0.006635 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.255330 B = 4219.010502 C = 4538.879280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.096 3.904 4 H 0.059 0.941 5 C 0.021 3.979 6 N -0.536 5.536 7 C 0.079 3.921 8 H 0.069 0.931 9 C -0.128 4.128 10 C -0.002 4.002 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.011 3.989 20 C 0.067 3.933 21 O -0.384 6.384 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.013 0.987 33 H 0.021 0.979 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 1.916 -4.959 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.038 3.962 4 H 0.077 0.923 5 C -0.107 4.107 6 N -0.260 5.260 7 C -0.028 4.028 8 H 0.087 0.913 9 C -0.186 4.186 10 C -0.040 4.040 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.117 4.117 20 C -0.010 4.010 21 O -0.303 6.303 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.126 2.017 -5.039 13.285 hybrid contribution 1.744 -0.414 0.451 1.849 sum -10.381 1.603 -4.587 11.462 Atomic orbital electron populations 1.21689 0.95463 1.01134 1.02052 1.21527 0.96368 0.94751 1.02859 1.22178 0.93625 0.93426 0.86981 0.92279 1.22741 0.94620 0.91121 1.02252 1.62640 1.14436 1.16160 1.32785 1.21866 0.83861 0.96760 1.00349 0.91273 1.21719 1.01445 0.95457 0.99974 1.19675 0.95627 0.95294 0.93425 1.21106 0.91883 1.40137 1.02319 0.92594 1.25020 0.98724 0.95449 0.95172 1.69958 1.35281 1.41177 1.07016 0.86672 0.85508 0.78331 0.77590 1.20212 1.21325 1.20255 1.22782 0.95356 1.00889 0.92673 1.22627 0.93611 0.83449 1.01297 1.87921 1.76603 1.26508 1.39267 0.93035 0.92067 0.93123 0.90667 0.91067 0.90485 0.92861 0.94192 0.93540 0.91515 0.96835 0.96041 0.92959 0.92900 0.89926 0.89150 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.51 5.65 -26.73 -0.15 -1.66 16 3 C 0.10 1.45 2.80 -26.68 -0.07 1.37 16 4 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 5 C 0.02 0.37 4.59 -3.71 -0.02 0.36 16 6 N -0.54 -9.93 4.72 -226.32 -1.07 -11.00 16 7 C 0.08 1.65 2.38 -67.71 -0.16 1.49 16 8 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 9 C -0.13 -2.46 8.80 37.16 0.33 -2.13 16 10 C 0.00 -0.05 3.69 -27.88 -0.10 -0.16 16 11 C -0.52 -14.34 8.33 -34.44 -0.29 -14.62 16 12 H 0.06 1.51 7.26 -52.49 -0.38 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.01 0.20 4.86 -3.71 -0.02 0.18 16 20 C 0.07 1.00 7.01 37.21 0.26 1.26 16 21 O -0.38 -6.29 10.01 -35.23 -0.35 -6.64 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.09 6.43 -51.93 -0.33 0.75 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 31 H 0.07 1.34 7.08 -51.93 -0.37 0.97 16 32 H 0.01 0.37 6.30 -51.93 -0.33 0.05 16 33 H 0.02 0.59 6.76 -51.93 -0.35 0.24 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.05 1.09 6.56 -51.93 -0.34 0.74 16 36 H 0.08 1.38 6.20 -51.92 -0.32 1.05 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -29.89 292.77 -7.77 -37.66 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.52 Total: -1.19 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 0.04 Total: -13.62 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.33 Total: -37.20 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.35 Total: -6.64 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.89 -7.77 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.948 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds