Wall clock time and date at job start Sun Mar 29 2020 21:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 H 1.08997 * 109.50896 * 304.91281 * 3 2 1 5 5 C 1.53099 * 109.53960 * 184.80280 * 3 2 1 6 6 N 1.47015 * 109.25532 * 183.19718 * 5 3 2 7 7 C 1.46901 * 110.99927 * 182.39333 * 6 5 3 8 8 H 1.08998 * 109.47073 * 55.61353 * 7 6 5 9 9 C 1.53004 * 109.47268 * 175.61709 * 7 6 5 10 10 C 1.53006 * 109.47179 * 295.61508 * 7 6 5 11 11 C 1.50695 * 109.47150 * 174.42772 * 10 7 6 12 12 H 1.08002 * 120.00220 * 355.60462 * 11 10 7 13 13 C 1.37879 * 120.00035 * 175.59614 * 11 10 7 14 14 N 1.31515 * 119.99715 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00264 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46714 * 60.00473 * 15 13 11 17 17 H 1.48496 * 109.46958 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46969 * 300.00492 * 15 13 11 19 19 C 1.47007 * 110.75489 * 58.61806 * 6 5 3 20 20 C 1.53101 * 109.25839 * 301.38061 * 19 6 5 21 21 O 1.43015 * 109.50568 * 64.99985 * 3 2 1 22 22 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.46942 * 300.00051 * 1 2 3 24 24 H 1.09003 * 109.46878 * 60.00225 * 1 2 3 25 25 H 1.09003 * 109.47000 * 239.99597 * 2 1 3 26 26 H 1.08998 * 109.46460 * 119.99976 * 2 1 3 27 27 H 1.08998 * 109.50639 * 63.25922 * 5 3 2 28 28 H 1.09003 * 109.50641 * 303.12974 * 5 3 2 29 29 H 1.08999 * 109.47218 * 299.99735 * 9 7 6 30 30 H 1.08996 * 109.46922 * 60.00086 * 9 7 6 31 31 H 1.09001 * 109.46939 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.46772 * 54.43212 * 10 7 6 33 33 H 1.08998 * 109.47321 * 294.43778 * 10 7 6 34 34 H 0.97000 * 120.00049 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.51266 * 61.31566 * 19 6 5 36 36 H 1.09009 * 109.50685 * 181.40596 * 19 6 5 37 37 H 1.08992 * 109.50982 * 176.78253 * 20 19 6 38 38 H 1.09005 * 109.50589 * 296.87438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9817 -0.8425 5 6 3.5662 1.4460 -0.1208 6 7 4.0555 2.8301 -0.0431 7 6 5.5138 2.8832 -0.2120 8 1 5.7887 2.4015 -1.1503 9 6 5.9719 4.3429 -0.2347 10 6 6.1890 2.1550 0.9520 11 6 7.6749 2.0901 0.7099 12 1 8.0878 2.4610 -0.2166 13 6 8.5074 1.5574 1.6712 14 7 8.0046 1.1054 2.7993 15 14 10.3495 1.4776 1.3715 16 1 10.8766 2.8499 1.1611 17 1 11.0165 0.8658 2.5487 18 1 10.6196 0.6534 0.1662 19 6 3.6488 3.4562 1.2233 20 6 2.1217 3.4325 1.3306 21 8 1.6621 2.0826 1.2218 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 3.8567 1.0103 -1.0768 28 1 3.9970 0.8615 0.6922 29 1 5.4910 4.8618 -1.0640 30 1 5.6970 4.8245 0.7036 31 1 7.0540 4.3822 -0.3596 32 1 5.7889 1.1439 1.0290 33 1 5.9950 2.6939 1.8793 34 1 8.5902 0.7302 3.4755 35 1 4.0808 2.9038 2.0577 36 1 4.0001 4.4878 1.2487 37 1 1.8181 3.8439 2.2932 38 1 1.6911 4.0302 0.5272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616015726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:35 Heat of formation + Delta-G solvation = -79.462036 kcal Electronic energy + Delta-G solvation = -16725.995367 eV Core-core repulsion = 14180.980428 eV Total energy + Delta-G solvation = -2545.014939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88867 -37.99278 -35.00637 -34.86861 -32.55324 -30.92970 -29.07818 -27.50131 -25.29259 -24.91348 -23.12507 -21.69927 -20.23455 -18.65744 -17.48497 -17.18851 -16.60165 -16.20776 -15.79301 -15.41215 -15.11789 -14.91594 -14.55896 -14.15586 -13.84755 -13.74063 -13.03859 -12.90096 -12.85006 -12.78483 -12.47568 -12.33855 -12.07628 -12.04856 -11.85957 -11.66637 -11.56502 -11.32765 -11.08427 -10.57200 -10.51501 -9.19419 -8.21833 -6.33216 1.37583 1.40408 1.48230 2.38058 2.80580 2.97409 3.10890 3.81207 3.99685 4.11391 4.16148 4.20270 4.33259 4.39731 4.46451 4.55643 4.61467 4.64950 4.71191 4.80359 4.89324 5.01361 5.02140 5.09579 5.12032 5.20258 5.27180 5.37764 5.46206 5.46856 5.53847 5.70738 5.98102 6.13345 6.27849 6.31241 6.83252 7.35728 8.89391 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035423 B = 0.006635 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.255330 B = 4219.010502 C = 4538.879280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.101 3.899 4 H 0.077 0.923 5 C 0.021 3.979 6 N -0.525 5.525 7 C 0.085 3.915 8 H 0.068 0.932 9 C -0.121 4.121 10 C 0.011 3.989 11 C -0.531 4.531 12 H 0.064 0.936 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.012 3.988 20 C 0.071 3.929 21 O -0.398 6.398 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.014 0.986 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.054 0.946 32 H -0.019 1.019 33 H -0.009 1.009 34 H 0.262 0.738 35 H 0.012 0.988 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 2.747 -6.588 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.043 3.957 4 H 0.095 0.905 5 C -0.108 4.108 6 N -0.248 5.248 7 C -0.022 4.022 8 H 0.086 0.914 9 C -0.178 4.178 10 C -0.027 4.027 11 C -0.569 4.569 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.117 4.117 20 C -0.006 4.006 21 O -0.318 6.318 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.073 0.927 32 H -0.001 1.001 33 H 0.009 0.991 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.658 2.858 -6.683 14.596 hybrid contribution 1.879 -0.690 0.976 2.227 sum -10.779 2.167 -5.706 12.387 Atomic orbital electron populations 1.21640 0.93665 1.02247 1.02149 1.21571 0.97881 0.93237 1.02808 1.22267 0.91354 0.94964 0.87137 0.90541 1.22826 0.96736 0.90085 1.01160 1.62712 1.12496 1.16596 1.33017 1.21709 0.85175 0.97471 0.97884 0.91410 1.21629 1.00875 0.94130 1.01162 1.19507 0.95383 0.93681 0.94175 1.21538 0.93046 1.39755 1.02600 0.91736 1.25984 1.04087 0.94954 0.94803 1.70115 1.37177 1.42264 1.08132 0.85520 0.79078 0.78933 0.77664 1.18889 1.21169 1.19166 1.22850 0.97587 1.00608 0.90625 1.22741 0.91153 0.83292 1.03414 1.87921 1.76453 1.27327 1.40069 0.91486 0.93144 0.91772 0.89058 0.92872 0.89564 0.96779 0.91200 0.93624 0.92677 1.00123 0.99092 0.92946 0.96984 0.88805 0.87057 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.81 71.98 0.71 -2.11 16 2 C -0.12 -2.89 5.65 30.59 0.17 -2.72 16 3 C 0.10 2.92 2.80 30.63 0.09 3.01 16 4 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 5 C 0.02 0.73 4.59 86.31 0.40 1.13 16 6 N -0.52 -19.31 4.72 -869.95 -4.11 -23.42 16 7 C 0.09 3.60 2.38 44.92 0.11 3.70 16 8 H 0.07 2.87 8.13 -2.39 -0.02 2.85 16 9 C -0.12 -4.48 8.80 71.98 0.63 -3.84 16 10 C 0.01 0.58 3.69 29.85 0.11 0.69 16 11 C -0.53 -30.06 8.33 25.60 0.21 -29.84 16 12 H 0.06 3.46 7.26 -2.91 -0.02 3.44 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 14 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 15 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 C 0.01 0.41 4.86 86.32 0.42 0.83 16 20 C 0.07 2.00 7.01 72.02 0.50 2.50 16 21 O -0.40 -12.68 10.01 -148.98 -1.49 -14.17 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.05 1.12 7.82 -2.39 -0.02 1.10 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.01 0.61 6.43 -2.39 -0.02 0.59 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.68 6.37 -2.39 -0.02 1.66 16 31 H 0.05 2.16 7.08 -2.39 -0.02 2.14 16 32 H -0.02 -1.15 6.30 -2.39 -0.02 -1.17 16 33 H -0.01 -0.55 6.76 -2.39 -0.02 -0.56 16 34 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 35 H 0.01 0.52 6.56 -2.39 -0.02 0.50 16 36 H 0.09 3.06 6.20 -2.38 -0.01 3.04 16 37 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -65.80 292.77 1.53 -64.26 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.01 Total: 10.88 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.81 Total: -26.23 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -3.82 Total: -81.24 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.49 Total: -14.17 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.80 1.53 -64.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616015726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.199 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds