Wall clock time and date at job start Sun Mar 29 2020 22:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99541 * 2 1 4 4 C 1.53004 * 109.46827 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47364 * 65.00103 * 4 3 2 6 6 C 1.36939 * 119.99994 * 264.40729 * 5 4 3 7 7 H 1.08004 * 119.99945 * 146.36861 * 6 5 4 8 8 C 1.38811 * 120.00036 * 326.37790 * 6 5 4 9 9 N 1.31623 * 119.99892 * 337.16335 * 8 6 5 10 10 Si 1.86797 * 120.00339 * 157.16812 * 8 6 5 11 11 H 1.48509 * 109.46948 * 59.99739 * 10 8 6 12 12 H 1.48498 * 109.47682 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47087 * 300.00010 * 10 8 6 14 14 C 1.46498 * 120.00076 * 84.40713 * 5 4 3 15 15 H 1.08997 * 110.53464 * 1.15895 * 14 5 4 16 16 C 1.54890 * 110.48521 * 238.54823 * 14 5 4 17 17 C 1.54891 * 102.74759 * 203.38025 * 16 14 5 18 18 C 1.54267 * 104.19817 * 37.94072 * 17 16 14 19 19 H 1.09003 * 110.03192 * 95.67396 * 18 17 16 20 20 C 1.52997 * 110.03316 * 217.10938 * 18 17 16 21 21 C 1.53881 * 106.59725 * 336.39401 * 18 17 16 22 22 H 1.08997 * 109.47789 * 299.99832 * 1 2 3 23 23 H 1.09001 * 109.47284 * 60.00489 * 1 2 3 24 24 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47108 * 60.00033 * 3 2 1 26 26 H 1.08996 * 109.47284 * 299.99636 * 3 2 1 27 27 H 1.09004 * 109.46634 * 304.99960 * 4 3 2 28 28 H 1.09000 * 109.47184 * 185.00514 * 4 3 2 29 29 H 0.96998 * 119.99776 * 179.97438 * 9 8 6 30 30 H 1.09004 * 110.75881 * 85.06663 * 16 14 5 31 31 H 1.08996 * 110.75557 * 321.69289 * 16 14 5 32 32 H 1.08997 * 110.48832 * 156.62014 * 17 16 14 33 33 H 1.09002 * 110.48398 * 279.26353 * 17 16 14 34 34 H 1.08993 * 109.47261 * 58.54853 * 20 18 17 35 35 H 1.09005 * 109.47007 * 178.55008 * 20 18 17 36 36 H 1.08999 * 109.46819 * 298.54223 * 20 18 17 37 37 H 1.08994 * 110.03121 * 119.28243 * 21 18 17 38 38 H 1.08998 * 110.03035 * 240.71790 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2508 6 6 4.2082 -0.7846 -1.3018 7 1 4.0005 -1.3342 -2.2080 8 6 4.7096 -1.4453 -0.1888 9 7 5.3738 -0.7763 0.7298 10 14 4.4419 -3.2837 0.0054 11 1 5.0567 -3.9975 -1.1427 12 1 5.0713 -3.7450 1.2688 13 1 2.9854 -3.5705 0.0440 14 6 4.1703 1.3864 -2.4478 15 1 3.9634 2.4340 -2.2295 16 6 3.2675 0.8845 -3.6020 17 6 4.0030 1.4046 -4.8620 18 6 5.4986 1.2325 -4.5252 19 1 5.8670 0.2908 -4.9322 20 6 6.3026 2.4017 -5.0974 21 6 5.6050 1.2208 -2.9902 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8507 0.5686 0.8428 28 1 3.9784 2.1767 0.0903 29 1 5.7239 -1.2380 1.5078 30 1 2.2706 1.3192 -3.5296 31 1 3.2160 -0.2042 -3.6067 32 1 3.7369 0.8063 -5.7333 33 1 3.7691 2.4553 -5.0337 34 1 5.9263 3.3378 -4.6850 35 1 7.3534 2.2842 -4.8323 36 1 6.2011 2.4158 -6.1826 37 1 6.0249 0.2735 -2.6522 38 1 6.2294 2.0481 -2.6529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616873160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:06 Heat of formation + Delta-G solvation = -39.209305 kcal Electronic energy + Delta-G solvation = -17017.990210 eV Core-core repulsion = 14474.720761 eV Total energy + Delta-G solvation = -2543.269450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.08374 -36.88995 -34.49877 -31.26809 -30.02844 -28.55864 -26.83537 -25.61521 -24.44099 -23.22710 -20.73280 -19.63375 -18.70569 -16.31172 -15.78922 -15.20032 -14.92447 -14.38258 -14.14095 -13.92823 -13.24201 -13.06205 -12.66206 -12.52820 -11.84265 -11.67975 -11.61087 -11.11442 -10.87255 -10.68467 -10.56690 -10.30341 -10.20676 -10.15465 -10.08757 -9.94150 -9.69530 -9.58867 -9.29282 -8.78044 -8.25537 -6.42961 -5.62691 -3.11625 3.50183 3.55165 3.61621 4.63927 4.73511 5.28097 5.34041 5.36106 5.53126 5.66776 5.78759 5.83101 5.86299 5.99293 6.09575 6.13769 6.17770 6.21165 6.24340 6.32461 6.43252 6.48023 6.56966 6.62760 6.71654 6.78188 6.81686 6.93247 7.13401 7.22946 7.45018 7.76487 7.99143 8.12734 8.68574 9.35551 10.01556 10.55093 11.40013 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.010887 C = 0.008525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.228286 B = 2571.337259 C = 3283.796568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.570 5.570 6 C -0.229 4.229 7 H 0.059 0.941 8 C 0.011 3.989 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.283 1.283 14 C 0.172 3.828 15 H 0.048 0.952 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.097 4.097 19 H 0.062 0.938 20 C -0.140 4.140 21 C -0.128 4.128 22 H 0.026 0.974 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.026 0.974 27 H 0.109 0.891 28 H 0.036 0.964 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 5.586 -5.878 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.033 4.033 4 C 0.014 3.986 5 N -0.288 5.288 6 C -0.358 4.358 7 H 0.076 0.924 8 C -0.187 4.187 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.209 1.209 14 C 0.064 3.936 15 H 0.066 0.934 16 C -0.173 4.173 17 C -0.156 4.156 18 C -0.116 4.116 19 H 0.080 0.920 20 C -0.197 4.197 21 C -0.167 4.167 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.999 5.358 -5.704 8.788 hybrid contribution -0.490 -0.669 0.143 0.842 sum -4.489 4.689 -5.561 8.547 Atomic orbital electron populations 1.22622 0.84335 1.01407 0.98350 1.88207 1.16487 1.27822 1.94812 1.23483 0.99184 0.83983 0.96691 1.21065 0.87113 0.96832 0.93551 1.43778 1.75341 1.04375 1.05339 1.18748 1.35231 0.82800 0.99049 0.92372 1.24927 0.97187 0.97386 0.99226 1.69972 1.36136 1.35371 1.12481 0.86506 0.78168 0.86195 0.76691 1.21228 1.22039 1.20919 1.21200 0.91999 0.92876 0.87543 0.93403 1.22889 0.97701 1.01756 0.94955 1.22368 0.95444 0.99789 0.97962 1.21703 0.94898 0.97602 0.97349 0.91981 1.21869 0.99757 0.98503 0.99584 1.22624 0.99301 1.02621 0.92166 0.95575 0.95362 0.90790 0.95878 0.95581 0.87380 0.94552 0.93860 0.93534 0.90892 0.93075 0.92679 0.93068 0.93227 0.93741 0.89921 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -8.01 10.44 -35.23 -0.37 -8.37 16 3 C 0.05 0.95 6.28 37.16 0.23 1.18 16 4 C 0.14 3.35 5.59 -4.04 -0.02 3.32 16 5 N -0.57 -13.99 2.45 -163.78 -0.40 -14.39 16 6 C -0.23 -6.20 7.61 -15.06 -0.11 -6.31 16 7 H 0.06 1.61 6.66 -52.48 -0.35 1.26 16 8 C 0.01 0.31 4.90 -17.43 -0.09 0.23 16 9 N -0.90 -25.95 11.36 55.49 0.63 -25.32 16 10 Si 0.89 22.50 29.61 -169.99 -5.03 17.46 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 13 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.17 3.60 3.39 -66.27 -0.22 3.37 16 15 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 16 C -0.13 -2.54 6.43 -24.74 -0.16 -2.70 16 17 C -0.12 -1.88 6.36 -25.07 -0.16 -2.04 16 18 C -0.10 -1.60 3.50 -89.50 -0.31 -1.92 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 20 C -0.14 -1.95 8.84 37.16 0.33 -1.62 16 21 C -0.13 -2.57 6.07 -25.61 -0.16 -2.72 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.11 2.94 5.35 -51.93 -0.28 2.66 16 28 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.55 6.53 -51.93 -0.34 1.21 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.95 6.97 -51.93 -0.36 1.59 16 38 H 0.04 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -29.05 300.05 -6.96 -36.01 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.75 Total: -2.34 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 0.44 Total: -7.57 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.23 Total: -39.71 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.37 Total: -8.37 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.05 -6.96 -36.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616873160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.203 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds