Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99541 * 2 1 4 4 C 1.53004 * 109.46827 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47364 * 65.00103 * 4 3 2 6 6 C 1.36939 * 119.99994 * 264.40729 * 5 4 3 7 7 H 1.08004 * 119.99945 * 146.36861 * 6 5 4 8 8 C 1.38811 * 120.00036 * 326.37790 * 6 5 4 9 9 N 1.31623 * 119.99892 * 337.16335 * 8 6 5 10 10 Si 1.86797 * 120.00339 * 157.16812 * 8 6 5 11 11 H 1.48509 * 109.46948 * 59.99739 * 10 8 6 12 12 H 1.48498 * 109.47682 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47087 * 300.00010 * 10 8 6 14 14 C 1.46498 * 120.00076 * 84.40713 * 5 4 3 15 15 H 1.08997 * 110.53464 * 1.15895 * 14 5 4 16 16 C 1.54890 * 110.48521 * 238.54823 * 14 5 4 17 17 C 1.54891 * 102.74759 * 203.38025 * 16 14 5 18 18 C 1.54267 * 104.19817 * 37.94072 * 17 16 14 19 19 H 1.09003 * 110.03192 * 95.67396 * 18 17 16 20 20 C 1.52997 * 110.03316 * 217.10938 * 18 17 16 21 21 C 1.53881 * 106.59725 * 336.39401 * 18 17 16 22 22 H 1.08997 * 109.47789 * 299.99832 * 1 2 3 23 23 H 1.09001 * 109.47284 * 60.00489 * 1 2 3 24 24 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47108 * 60.00033 * 3 2 1 26 26 H 1.08996 * 109.47284 * 299.99636 * 3 2 1 27 27 H 1.09004 * 109.46634 * 304.99960 * 4 3 2 28 28 H 1.09000 * 109.47184 * 185.00514 * 4 3 2 29 29 H 0.96998 * 119.99776 * 179.97438 * 9 8 6 30 30 H 1.09004 * 110.75881 * 85.06663 * 16 14 5 31 31 H 1.08996 * 110.75557 * 321.69289 * 16 14 5 32 32 H 1.08997 * 110.48832 * 156.62014 * 17 16 14 33 33 H 1.09002 * 110.48398 * 279.26353 * 17 16 14 34 34 H 1.08993 * 109.47261 * 58.54853 * 20 18 17 35 35 H 1.09005 * 109.47007 * 178.55008 * 20 18 17 36 36 H 1.08999 * 109.46819 * 298.54223 * 20 18 17 37 37 H 1.08994 * 110.03121 * 119.28243 * 21 18 17 38 38 H 1.08998 * 110.03035 * 240.71790 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2508 6 6 4.2082 -0.7846 -1.3018 7 1 4.0005 -1.3342 -2.2080 8 6 4.7096 -1.4453 -0.1888 9 7 5.3738 -0.7763 0.7298 10 14 4.4419 -3.2837 0.0054 11 1 5.0567 -3.9975 -1.1427 12 1 5.0713 -3.7450 1.2688 13 1 2.9854 -3.5705 0.0440 14 6 4.1703 1.3864 -2.4478 15 1 3.9634 2.4340 -2.2295 16 6 3.2675 0.8845 -3.6020 17 6 4.0030 1.4046 -4.8620 18 6 5.4986 1.2325 -4.5252 19 1 5.8670 0.2908 -4.9322 20 6 6.3026 2.4017 -5.0974 21 6 5.6050 1.2208 -2.9902 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8507 0.5686 0.8428 28 1 3.9784 2.1767 0.0903 29 1 5.7239 -1.2380 1.5078 30 1 2.2706 1.3192 -3.5296 31 1 3.2160 -0.2042 -3.6067 32 1 3.7369 0.8063 -5.7333 33 1 3.7691 2.4553 -5.0337 34 1 5.9263 3.3378 -4.6850 35 1 7.3534 2.2842 -4.8323 36 1 6.2011 2.4158 -6.1826 37 1 6.0249 0.2735 -2.6522 38 1 6.2294 2.0481 -2.6529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616873160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = -55.935352 kcal Electronic energy + Delta-G solvation = -17018.715506 eV Core-core repulsion = 14474.720761 eV Total energy + Delta-G solvation = -2543.994746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.68086 -38.46859 -36.27237 -33.21358 -31.53170 -30.15274 -28.51754 -27.15227 -26.02717 -24.88062 -22.48796 -21.25049 -20.22755 -18.23429 -17.44035 -16.77713 -16.68381 -16.09415 -15.77226 -15.54752 -14.83919 -14.71303 -14.06411 -13.87590 -13.53280 -13.40976 -12.98296 -12.75125 -12.71830 -12.49514 -12.31129 -12.07446 -11.86143 -11.73923 -11.55201 -11.47070 -11.39715 -11.18568 -10.99329 -10.38781 -10.29153 -8.43147 -7.71065 -5.22227 1.45854 1.50340 1.56760 2.59863 3.20726 3.38765 3.65858 3.97491 3.98843 4.21210 4.41221 4.53314 4.58860 4.62241 4.66366 4.73589 4.77931 4.80621 4.82818 4.88982 4.94419 4.96599 5.02444 5.12847 5.25149 5.28393 5.34950 5.46118 5.60230 5.71477 5.73312 5.79795 5.88743 6.51600 6.68514 7.30699 8.03754 8.50996 9.27255 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.010887 C = 0.008525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.228286 B = 2571.337259 C = 3283.796568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.056 3.944 4 C 0.137 3.863 5 N -0.584 5.584 6 C -0.217 4.217 7 H 0.047 0.953 8 C -0.038 4.038 9 N -0.923 5.923 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.296 1.296 13 H -0.287 1.287 14 C 0.162 3.838 15 H 0.062 0.938 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.093 4.093 19 H 0.055 0.945 20 C -0.134 4.134 21 C -0.123 4.123 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.245 0.755 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 6.791 -7.497 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.022 4.022 4 C 0.011 3.989 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.065 0.935 8 C -0.233 4.233 9 N -0.569 5.569 10 Si 0.772 3.228 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.214 1.214 14 C 0.056 3.944 15 H 0.080 0.920 16 C -0.167 4.167 17 C -0.144 4.144 18 C -0.112 4.112 19 H 0.074 0.926 20 C -0.191 4.191 21 C -0.163 4.163 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.112 6.573 -7.348 11.105 hybrid contribution -0.194 -1.000 0.627 1.197 sum -5.307 5.572 -6.721 10.217 Atomic orbital electron populations 1.22814 0.81552 1.02571 1.00074 1.88127 1.19659 1.28843 1.95190 1.23248 0.96805 0.83879 0.98309 1.21001 0.89563 0.96291 0.92086 1.43949 1.75728 1.03988 1.06590 1.18788 1.33391 0.84286 0.98320 0.93507 1.25448 0.98011 1.00227 0.99610 1.70089 1.37756 1.36204 1.12863 0.85729 0.77503 0.83052 0.76506 1.20597 1.22284 1.21408 1.21449 0.92958 0.93151 0.86888 0.92022 1.22755 0.98190 0.99931 0.95782 1.22327 0.93918 1.01351 0.96789 1.21662 0.96257 0.98827 0.94475 0.92625 1.21805 0.99155 0.97230 1.00903 1.22518 0.98501 1.00148 0.95104 0.93465 0.93852 0.90050 0.93560 0.94323 0.90957 0.93694 0.94542 0.92598 0.93794 0.91391 0.90311 0.92336 0.93280 0.91436 0.94361 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.64 10.44 -148.98 -1.56 -19.20 16 3 C 0.06 2.26 6.28 71.98 0.45 2.71 16 4 C 0.14 6.53 5.59 86.38 0.48 7.01 16 5 N -0.58 -28.89 2.45 -672.08 -1.64 -30.53 16 6 C -0.22 -12.04 7.61 84.03 0.64 -11.40 16 7 H 0.05 2.67 6.66 -2.91 -0.02 2.65 16 8 C -0.04 -2.15 4.90 84.86 0.42 -1.74 16 9 N -0.92 -55.19 11.36 21.65 0.25 -54.94 16 10 Si 0.94 47.30 29.61 68.60 2.03 49.33 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 13 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.16 6.68 3.39 46.07 0.16 6.83 16 15 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 16 C -0.13 -4.64 6.43 31.89 0.21 -4.43 16 17 C -0.11 -3.05 6.36 31.67 0.20 -2.85 16 18 C -0.09 -2.91 3.50 -10.07 -0.04 -2.95 16 19 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.13 -3.30 8.84 71.98 0.64 -2.66 16 21 C -0.12 -4.93 6.07 31.32 0.19 -4.74 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 4.04 5.35 -2.38 -0.01 4.03 16 28 H 0.04 1.99 8.06 -2.39 -0.02 1.97 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.85 6.53 -2.39 -0.02 1.83 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.94 7.85 -2.39 -0.02 1.92 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.85 6.97 -2.39 -0.02 1.84 16 38 H 0.05 1.81 7.67 -2.39 -0.02 1.79 16 Total: -1.00 -63.70 300.05 4.67 -59.03 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.00 Total: 8.42 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.59 Total: -12.11 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -1.40 Total: -85.48 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.56 Total: -19.20 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -63.70 4.67 -59.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616873160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.099 kcal (2) G-P(sol) polarization free energy of solvation -63.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds