Wall clock time and date at job start Sun Mar 29 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00101 * 2 1 4 4 C 1.52999 * 109.47228 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47126 * 64.99777 * 4 3 2 6 6 C 1.36936 * 120.00395 * 270.00283 * 5 4 3 7 7 H 1.07992 * 120.00342 * 142.65868 * 6 5 4 8 8 C 1.38811 * 119.99611 * 322.65820 * 6 5 4 9 9 N 1.31618 * 119.99946 * 157.63249 * 8 6 5 10 10 Si 1.86801 * 120.00284 * 337.63151 * 8 6 5 11 11 H 1.48498 * 109.47337 * 95.34233 * 10 8 6 12 12 H 1.48502 * 109.46910 * 215.34167 * 10 8 6 13 13 H 1.48496 * 109.46914 * 335.33919 * 10 8 6 14 14 C 1.46507 * 119.99729 * 90.00415 * 5 4 3 15 15 H 1.09000 * 110.01508 * 0.41136 * 14 5 4 16 16 C 1.53874 * 110.03379 * 121.80106 * 14 5 4 17 17 C 1.54259 * 106.59867 * 119.28099 * 16 14 5 18 18 C 1.54889 * 104.19512 * 23.61320 * 17 16 14 19 19 H 1.08997 * 110.76004 * 80.36749 * 18 17 16 20 20 C 1.52997 * 110.75562 * 203.55563 * 18 17 16 21 21 C 1.54265 * 110.02865 * 239.01979 * 14 5 4 22 22 H 1.08994 * 109.47137 * 299.99979 * 1 2 3 23 23 H 1.09007 * 109.47268 * 59.99637 * 1 2 3 24 24 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47200 * 300.00042 * 3 2 1 26 26 H 1.09005 * 109.47238 * 59.99919 * 3 2 1 27 27 H 1.08995 * 109.47587 * 185.00145 * 4 3 2 28 28 H 1.09005 * 109.46959 * 305.00232 * 4 3 2 29 29 H 0.96998 * 120.00777 * 180.02562 * 9 8 6 30 30 H 1.09002 * 110.03116 * 238.57282 * 16 14 5 31 31 H 1.09001 * 110.03147 * 359.97438 * 16 14 5 32 32 H 1.09003 * 110.48482 * 142.28513 * 17 16 14 33 33 H 1.09000 * 110.49001 * 264.93306 * 17 16 14 34 34 H 1.09002 * 109.47471 * 63.21532 * 20 18 17 35 35 H 1.09006 * 109.47330 * 183.20943 * 20 18 17 36 36 H 1.09000 * 109.47515 * 303.20921 * 20 18 17 37 37 H 1.08995 * 110.48652 * 335.78185 * 21 14 5 38 38 H 1.08996 * 110.48703 * 98.42862 * 21 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8249 -1.3080 -2.2487 8 6 4.5687 -1.5203 -0.2502 9 7 4.2873 -2.8013 -0.1400 10 14 5.6034 -0.6756 1.0557 11 1 4.7310 -0.2490 2.1791 12 1 6.6325 -1.6204 1.5594 13 1 6.2693 0.5138 0.4667 14 6 4.2864 1.4007 -2.4148 15 1 4.1426 2.4523 -2.1668 16 6 5.7378 1.1590 -2.8651 17 6 5.6678 0.6289 -4.3121 18 6 4.3070 1.1465 -4.8408 19 1 4.3842 2.1885 -5.1511 20 6 3.8067 0.2751 -5.9945 21 6 3.3841 1.0098 -3.6035 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6886 1.8464 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 3.9786 2.1764 0.0889 28 1 3.8514 0.5681 0.8409 29 1 4.6168 -3.3068 0.6195 30 1 6.2981 2.0936 -2.8365 31 1 6.2111 0.4199 -2.2188 32 1 6.4869 1.0335 -4.9067 33 1 5.6908 -0.4608 -4.3207 34 1 3.6275 -0.7378 -5.6337 35 1 2.8785 0.6902 -6.3874 36 1 4.5573 0.2520 -6.7845 37 1 3.0379 -0.0183 -3.4977 38 1 2.5378 1.6923 -3.6806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616873162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:08 Heat of formation + Delta-G solvation = -30.408988 kcal Electronic energy + Delta-G solvation = -17162.634013 eV Core-core repulsion = 14619.746174 eV Total energy + Delta-G solvation = -2542.887839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.24161 -36.94949 -34.57321 -31.47135 -30.33423 -28.54465 -27.25547 -25.62765 -24.55575 -22.95270 -21.39926 -19.37823 -18.86128 -16.45774 -15.83710 -15.50073 -15.02309 -14.67400 -14.15425 -14.06250 -13.33864 -12.99417 -12.70283 -12.50293 -12.20778 -11.80464 -11.64332 -11.39972 -11.09899 -10.78437 -10.64465 -10.52038 -10.25929 -10.16418 -10.07164 -9.85552 -9.67756 -9.56049 -9.31981 -8.81417 -8.29192 -6.64814 -5.78580 -3.17455 3.41994 3.56145 3.59799 4.62527 4.69419 4.98696 5.23604 5.36873 5.44255 5.60216 5.75427 5.82793 5.89589 5.97161 6.00449 6.03352 6.08756 6.15484 6.17514 6.21344 6.28244 6.34946 6.43006 6.47701 6.56091 6.60720 6.69429 6.79881 6.81048 7.04658 7.22001 7.24798 8.04033 8.26357 8.59668 9.17393 9.92790 10.30391 11.37927 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.012109 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.774942 B = 2311.816245 C = 2940.644121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.047 3.953 4 C 0.133 3.867 5 N -0.594 5.594 6 C -0.238 4.238 7 H 0.077 0.923 8 C 0.041 3.959 9 N -0.901 5.901 10 Si 0.868 3.132 11 H -0.289 1.289 12 H -0.306 1.306 13 H -0.271 1.271 14 C 0.172 3.828 15 H 0.048 0.952 16 C -0.134 4.134 17 C -0.111 4.111 18 C -0.098 4.098 19 H 0.062 0.938 20 C -0.140 4.140 21 C -0.127 4.127 22 H 0.025 0.975 23 H 0.028 0.972 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.258 0.742 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 9.421 -4.810 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.032 4.032 4 C 0.007 3.993 5 N -0.315 5.315 6 C -0.367 4.367 7 H 0.095 0.905 8 C -0.158 4.158 9 N -0.543 5.543 10 Si 0.699 3.301 11 H -0.217 1.217 12 H -0.234 1.234 13 H -0.196 1.196 14 C 0.065 3.935 15 H 0.067 0.933 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.117 4.117 19 H 0.080 0.920 20 C -0.198 4.198 21 C -0.166 4.166 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.415 9.088 -4.712 10.518 hybrid contribution 0.253 0.667 0.909 1.155 sum -2.163 9.755 -3.803 10.691 Atomic orbital electron populations 1.22632 0.83957 1.01792 0.98174 1.88307 1.16766 1.26492 1.94765 1.23285 0.97529 0.85027 0.97374 1.21335 0.90276 0.96457 0.91226 1.44205 1.75873 1.03717 1.07680 1.18459 1.36936 0.79773 1.01487 0.90524 1.25329 0.98232 0.94740 0.97549 1.69871 1.45719 1.08124 1.30543 0.87067 0.81227 0.79327 0.82428 1.21724 1.23400 1.19592 1.21036 0.92025 0.92625 0.87779 0.93342 1.22563 0.98632 0.99918 0.96201 1.22296 0.95597 1.00949 0.96038 1.22056 0.96275 0.98204 0.95144 0.91992 1.21739 0.99880 1.00352 0.97786 1.22878 0.96992 1.02732 0.93996 0.95694 0.95312 0.90380 0.94601 0.95661 0.92998 0.92077 0.93177 0.93936 0.90225 0.93411 0.91468 0.92402 0.93530 0.93507 0.89933 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.86 10.18 -35.23 -0.36 -8.22 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.13 2.92 4.91 -4.04 -0.02 2.90 16 5 N -0.59 -13.87 2.01 -164.39 -0.33 -14.20 16 6 C -0.24 -6.53 7.89 -15.06 -0.12 -6.65 16 7 H 0.08 2.31 6.87 -52.49 -0.36 1.95 16 8 C 0.04 1.19 5.30 -17.43 -0.09 1.10 16 9 N -0.90 -27.97 13.97 55.49 0.78 -27.19 16 10 Si 0.87 22.55 25.04 -169.99 -4.26 18.29 16 11 H -0.29 -7.42 6.67 56.52 0.38 -7.05 16 12 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 13 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.17 3.41 3.42 -66.81 -0.23 3.18 16 15 H 0.05 0.87 7.83 -51.93 -0.41 0.47 16 16 C -0.13 -2.55 6.27 -25.62 -0.16 -2.71 16 17 C -0.11 -1.88 6.27 -25.08 -0.16 -2.04 16 18 C -0.10 -1.54 3.48 -88.59 -0.31 -1.85 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.14 -2.00 9.31 37.16 0.35 -1.65 16 21 C -0.13 -2.33 5.87 -25.03 -0.15 -2.47 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 28 H 0.06 1.50 3.24 -51.93 -0.17 1.33 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.77 7.30 -51.93 -0.38 1.39 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.78 6.24 -51.93 -0.32 1.46 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -1.00 -30.74 295.47 -5.95 -36.70 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.70 Total: -2.48 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.46 Total: -7.35 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.44 Total: -41.40 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.36 Total: -8.22 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.26 Total: 18.29 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.74 -5.95 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616873162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.288 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds