Wall clock time and date at job start Sun Mar 29 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00101 * 2 1 4 4 C 1.52999 * 109.47228 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47126 * 64.99777 * 4 3 2 6 6 C 1.36936 * 120.00395 * 270.00283 * 5 4 3 7 7 H 1.07992 * 120.00342 * 142.65868 * 6 5 4 8 8 C 1.38811 * 119.99611 * 322.65820 * 6 5 4 9 9 N 1.31618 * 119.99946 * 157.63249 * 8 6 5 10 10 Si 1.86801 * 120.00284 * 337.63151 * 8 6 5 11 11 H 1.48498 * 109.47337 * 95.34233 * 10 8 6 12 12 H 1.48502 * 109.46910 * 215.34167 * 10 8 6 13 13 H 1.48496 * 109.46914 * 335.33919 * 10 8 6 14 14 C 1.46507 * 119.99729 * 90.00415 * 5 4 3 15 15 H 1.09000 * 110.01508 * 0.41136 * 14 5 4 16 16 C 1.53874 * 110.03379 * 121.80106 * 14 5 4 17 17 C 1.54259 * 106.59867 * 119.28099 * 16 14 5 18 18 C 1.54889 * 104.19512 * 23.61320 * 17 16 14 19 19 H 1.08997 * 110.76004 * 80.36749 * 18 17 16 20 20 C 1.52997 * 110.75562 * 203.55563 * 18 17 16 21 21 C 1.54265 * 110.02865 * 239.01979 * 14 5 4 22 22 H 1.08994 * 109.47137 * 299.99979 * 1 2 3 23 23 H 1.09007 * 109.47268 * 59.99637 * 1 2 3 24 24 H 1.09000 * 109.47513 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47200 * 300.00042 * 3 2 1 26 26 H 1.09005 * 109.47238 * 59.99919 * 3 2 1 27 27 H 1.08995 * 109.47587 * 185.00145 * 4 3 2 28 28 H 1.09005 * 109.46959 * 305.00232 * 4 3 2 29 29 H 0.96998 * 120.00777 * 180.02562 * 9 8 6 30 30 H 1.09002 * 110.03116 * 238.57282 * 16 14 5 31 31 H 1.09001 * 110.03147 * 359.97438 * 16 14 5 32 32 H 1.09003 * 110.48482 * 142.28513 * 17 16 14 33 33 H 1.09000 * 110.49001 * 264.93306 * 17 16 14 34 34 H 1.09002 * 109.47471 * 63.21532 * 20 18 17 35 35 H 1.09006 * 109.47330 * 183.20943 * 20 18 17 36 36 H 1.09000 * 109.47515 * 303.20921 * 20 18 17 37 37 H 1.08995 * 110.48652 * 335.78185 * 21 14 5 38 38 H 1.08996 * 110.48703 * 98.42862 * 21 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8249 -1.3080 -2.2487 8 6 4.5687 -1.5203 -0.2502 9 7 4.2873 -2.8013 -0.1400 10 14 5.6034 -0.6756 1.0557 11 1 4.7310 -0.2490 2.1791 12 1 6.6325 -1.6204 1.5594 13 1 6.2693 0.5138 0.4667 14 6 4.2864 1.4007 -2.4148 15 1 4.1426 2.4523 -2.1668 16 6 5.7378 1.1590 -2.8651 17 6 5.6678 0.6289 -4.3121 18 6 4.3070 1.1465 -4.8408 19 1 4.3842 2.1885 -5.1511 20 6 3.8067 0.2751 -5.9945 21 6 3.3841 1.0098 -3.6035 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6886 1.8464 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 3.9786 2.1764 0.0889 28 1 3.8514 0.5681 0.8409 29 1 4.6168 -3.3068 0.6195 30 1 6.2981 2.0936 -2.8365 31 1 6.2111 0.4199 -2.2188 32 1 6.4869 1.0335 -4.9067 33 1 5.6908 -0.4608 -4.3207 34 1 3.6275 -0.7378 -5.6337 35 1 2.8785 0.6902 -6.3874 36 1 4.5573 0.2520 -6.7845 37 1 3.0379 -0.0183 -3.4977 38 1 2.5378 1.6923 -3.6806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616873162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:07 Heat of formation + Delta-G solvation = -50.224826 kcal Electronic energy + Delta-G solvation = -17163.493292 eV Core-core repulsion = 14619.746174 eV Total energy + Delta-G solvation = -2543.747119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80802 -38.49398 -36.28629 -33.56012 -31.75454 -30.11991 -28.88251 -27.15282 -26.12611 -24.63523 -23.10260 -20.80419 -20.49754 -18.38436 -17.50296 -17.17882 -16.58183 -16.28795 -15.82362 -15.68418 -14.90667 -14.66653 -14.28277 -14.01943 -13.81762 -13.45131 -13.18669 -12.90302 -12.78829 -12.51434 -12.26691 -12.17288 -11.78933 -11.73459 -11.60402 -11.38222 -11.28911 -11.16437 -11.08903 -10.47275 -10.32355 -8.58029 -8.01397 -5.35197 1.33566 1.43019 1.53072 2.54249 3.13401 3.17697 3.49796 3.87972 4.00437 4.18662 4.34713 4.43189 4.52034 4.55837 4.60686 4.62590 4.69715 4.72768 4.80406 4.85147 4.87437 4.90164 4.95274 5.05724 5.09713 5.22408 5.28445 5.33263 5.42991 5.59870 5.65699 5.77109 6.12589 6.36711 6.60826 7.18177 7.83929 8.22553 9.19901 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.012109 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.774942 B = 2311.816245 C = 2940.644121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.050 3.950 4 C 0.122 3.878 5 N -0.604 5.604 6 C -0.201 4.201 7 H 0.034 0.966 8 C -0.022 4.022 9 N -0.956 5.956 10 Si 0.932 3.068 11 H -0.284 1.284 12 H -0.319 1.319 13 H -0.254 1.254 14 C 0.163 3.837 15 H 0.080 0.920 16 C -0.134 4.134 17 C -0.110 4.110 18 C -0.088 4.088 19 H 0.093 0.907 20 C -0.138 4.138 21 C -0.122 4.122 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 12.976 -5.517 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.326 5.326 6 C -0.331 4.331 7 H 0.052 0.948 8 C -0.216 4.216 9 N -0.602 5.602 10 Si 0.763 3.237 11 H -0.213 1.213 12 H -0.249 1.249 13 H -0.178 1.178 14 C 0.057 3.943 15 H 0.098 0.902 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.107 4.107 19 H 0.111 0.889 20 C -0.195 4.195 21 C -0.162 4.162 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.511 12.706 -5.433 14.045 hybrid contribution 0.188 -0.389 1.033 1.120 sum -2.324 12.317 -4.400 13.284 Atomic orbital electron populations 1.22774 0.81488 1.02337 1.00117 1.88227 1.19735 1.28573 1.95208 1.23248 0.95848 0.84389 0.99438 1.21508 0.92217 0.97405 0.89199 1.44313 1.76362 1.02483 1.09411 1.18176 1.33829 0.81863 0.99267 0.94799 1.25875 1.00180 0.95225 1.00315 1.70016 1.48370 1.10006 1.31829 0.86027 0.79229 0.78332 0.80139 1.21251 1.24910 1.17782 1.21351 0.92679 0.93536 0.86746 0.90233 1.22535 0.98087 1.00188 0.96492 1.22277 0.97695 0.99212 0.95554 1.22051 0.94319 1.00059 0.94242 0.88872 1.21711 1.01312 0.98718 0.97794 1.22763 0.97923 1.00353 0.95114 0.93115 0.93773 0.90736 0.93157 0.92650 0.89341 0.94886 0.93776 0.90974 0.94232 0.90518 0.94529 0.94992 0.91904 0.91564 0.94349 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.87 10.18 -148.98 -1.52 -19.39 16 3 C 0.05 1.84 6.28 71.98 0.45 2.29 16 4 C 0.12 5.07 4.91 86.38 0.42 5.49 16 5 N -0.60 -27.73 2.01 -674.01 -1.35 -29.08 16 6 C -0.20 -11.40 7.89 84.03 0.66 -10.73 16 7 H 0.03 2.20 6.87 -2.91 -0.02 2.18 16 8 C -0.02 -1.29 5.30 84.86 0.45 -0.84 16 9 N -0.96 -62.45 13.97 21.65 0.30 -62.15 16 10 Si 0.93 47.92 25.04 68.60 1.72 49.63 16 11 H -0.28 -14.24 6.67 99.48 0.66 -13.58 16 12 H -0.32 -16.94 7.11 99.48 0.71 -16.23 16 13 H -0.25 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.16 6.04 3.42 45.71 0.16 6.20 16 15 H 0.08 2.50 7.83 -2.39 -0.02 2.48 16 16 C -0.13 -4.82 6.27 31.32 0.20 -4.63 16 17 C -0.11 -3.53 6.27 31.67 0.20 -3.33 16 18 C -0.09 -2.52 3.48 -9.48 -0.03 -2.55 16 19 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 20 C -0.14 -3.67 9.31 71.98 0.67 -3.00 16 21 C -0.12 -4.30 5.87 31.70 0.19 -4.12 16 22 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.09 2.99 7.93 -2.39 -0.02 2.98 16 28 H 0.03 1.58 3.24 -2.38 -0.01 1.57 16 29 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.74 7.30 -2.39 -0.02 1.72 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.38 8.05 -2.39 -0.02 1.36 16 34 H 0.03 0.99 8.04 -2.39 -0.02 0.97 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.69 6.24 -2.39 -0.01 1.67 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -70.22 295.47 4.72 -65.50 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.96 Total: 8.47 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.61 Total: -12.99 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -1.05 Total: -91.23 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.52 Total: -19.39 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.72 Total: 49.63 kcal Total: -70.22 4.72 -65.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616873162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.278 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds