Wall clock time and date at job start Sun Mar 29 2020 22:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99788 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47205 * 64.99922 * 4 3 2 6 6 C 1.36939 * 120.00106 * 269.99846 * 5 4 3 7 7 H 1.08007 * 119.99705 * 141.80525 * 6 5 4 8 8 C 1.38810 * 120.00263 * 321.81127 * 6 5 4 9 9 N 1.31613 * 120.00291 * 156.86938 * 8 6 5 10 10 Si 1.86805 * 119.99644 * 336.86851 * 8 6 5 11 11 H 1.48501 * 109.46895 * 95.43147 * 10 8 6 12 12 H 1.48497 * 109.46800 * 215.42542 * 10 8 6 13 13 H 1.48491 * 109.47165 * 335.42715 * 10 8 6 14 14 C 1.46500 * 120.00029 * 90.00198 * 5 4 3 15 15 H 1.09004 * 110.01497 * 3.14282 * 14 5 4 16 16 C 1.54265 * 110.03416 * 124.53298 * 14 5 4 17 17 C 1.54883 * 104.19634 * 142.89547 * 16 14 5 18 18 C 1.54892 * 102.75063 * 322.06206 * 17 16 14 19 19 H 1.09001 * 110.48181 * 279.26585 * 18 17 16 20 20 C 1.52994 * 110.49019 * 156.75161 * 18 17 16 21 21 C 1.53873 * 110.03198 * 241.75326 * 14 5 4 22 22 H 1.09000 * 109.47163 * 299.99482 * 1 2 3 23 23 H 1.09003 * 109.47093 * 60.00140 * 1 2 3 24 24 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47316 * 300.00026 * 3 2 1 26 26 H 1.09004 * 109.46897 * 60.00291 * 3 2 1 27 27 H 1.08999 * 109.47449 * 185.00451 * 4 3 2 28 28 H 1.09008 * 109.46713 * 304.99903 * 4 3 2 29 29 H 0.96999 * 120.00331 * 179.97438 * 9 8 6 30 30 H 1.09001 * 110.48894 * 261.57765 * 16 14 5 31 31 H 1.08999 * 110.48465 * 24.08541 * 16 14 5 32 32 H 1.09007 * 110.75464 * 80.37266 * 17 16 14 33 33 H 1.09000 * 110.76110 * 203.56199 * 17 16 14 34 34 H 1.09001 * 109.47114 * 61.45548 * 20 18 17 35 35 H 1.08997 * 109.47110 * 181.44986 * 20 18 17 36 36 H 1.08995 * 109.47332 * 301.45320 * 20 18 17 37 37 H 1.08992 * 110.03437 * 0.02562 * 21 14 5 38 38 H 1.09000 * 110.03283 * 121.42949 * 21 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.0969 -0.7968 -1.3369 7 1 3.8121 -1.3093 -2.2440 8 6 4.5856 -1.5183 -0.2563 9 7 4.2947 -2.7959 -0.1324 10 14 5.6562 -0.6758 1.0218 11 1 4.8125 -0.2363 2.1621 12 1 6.6884 -1.6265 1.5073 13 1 6.3185 0.5051 0.4120 14 6 4.2863 1.4008 -2.4148 15 1 4.1892 2.4545 -2.1529 16 6 5.7185 1.1088 -2.9082 17 6 5.6152 1.2026 -4.4508 18 6 4.2322 0.5679 -4.7400 19 1 4.3031 -0.5198 -4.7344 20 6 3.6869 1.0608 -6.0818 21 6 3.3405 1.0577 -3.5790 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8465 -0.8900 26 1 1.6886 1.8464 0.8901 27 1 3.9785 2.1766 0.0890 28 1 3.8514 0.5683 0.8410 29 1 4.6365 -3.3001 0.6225 30 1 6.4135 1.8566 -2.5262 31 1 6.0302 0.1094 -2.6048 32 1 5.6388 2.2424 -4.7770 33 1 6.4125 0.6318 -4.9268 34 1 4.3643 0.7613 -6.8815 35 1 2.7033 0.6247 -6.2565 36 1 3.6044 2.1475 -6.0634 37 1 2.6501 0.2694 -3.2793 38 1 2.7851 1.9450 -3.8827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616873164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:10 Heat of formation + Delta-G solvation = -31.873111 kcal Electronic energy + Delta-G solvation = -17139.085338 eV Core-core repulsion = 14596.134010 eV Total energy + Delta-G solvation = -2542.951328 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.24463 -36.94706 -34.57602 -31.47802 -30.34045 -28.58678 -27.21447 -25.62503 -24.53613 -22.95801 -21.32953 -19.53930 -18.78964 -16.43827 -15.89538 -15.29493 -15.18642 -14.56899 -14.13092 -13.87488 -13.66390 -12.97859 -12.68943 -12.57752 -12.17467 -11.76306 -11.61713 -11.52497 -11.04673 -10.79448 -10.64187 -10.46273 -10.25049 -10.17160 -10.03911 -9.89401 -9.72214 -9.58141 -9.36993 -8.81630 -8.28128 -6.63047 -5.79502 -3.18218 3.42255 3.56435 3.60822 4.62971 4.69666 5.01483 5.24563 5.34394 5.41759 5.59572 5.75690 5.82077 5.83890 5.97006 6.01708 6.05220 6.08621 6.15726 6.17555 6.21603 6.24352 6.34928 6.37913 6.47821 6.51303 6.58668 6.69732 6.79264 6.84364 7.02818 7.22488 7.28547 8.04390 8.26571 8.60815 9.17249 9.92619 10.30973 11.36975 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.011965 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.700988 B = 2339.569339 C = 3009.503939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.048 3.952 4 C 0.134 3.866 5 N -0.593 5.593 6 C -0.239 4.239 7 H 0.076 0.924 8 C 0.042 3.958 9 N -0.899 5.899 10 Si 0.866 3.134 11 H -0.289 1.289 12 H -0.305 1.305 13 H -0.270 1.270 14 C 0.172 3.828 15 H 0.048 0.952 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.094 4.094 19 H 0.073 0.927 20 C -0.140 4.140 21 C -0.127 4.127 22 H 0.025 0.975 23 H 0.028 0.972 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.258 0.742 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 9.706 -4.877 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.032 4.032 4 C 0.007 3.993 5 N -0.314 5.314 6 C -0.368 4.368 7 H 0.094 0.906 8 C -0.158 4.158 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.065 3.935 15 H 0.066 0.934 16 C -0.174 4.174 17 C -0.154 4.154 18 C -0.112 4.112 19 H 0.092 0.908 20 C -0.198 4.198 21 C -0.166 4.166 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.503 9.375 -4.782 10.817 hybrid contribution 0.272 0.642 0.892 1.132 sum -2.230 10.017 -3.890 10.974 Atomic orbital electron populations 1.22634 0.83969 1.01788 0.98177 1.88310 1.16753 1.26503 1.94767 1.23283 0.97541 0.85011 0.97373 1.21323 0.90259 0.96436 0.91233 1.44216 1.75823 1.03680 1.07730 1.18445 1.36464 0.79782 1.02082 0.90636 1.25353 0.98148 0.94727 0.97546 1.69887 1.45049 1.08463 1.30648 0.87077 0.81626 0.79400 0.82187 1.21708 1.23324 1.19530 1.21046 0.92076 0.92640 0.87755 0.93364 1.22787 0.98033 1.02977 0.93578 1.22465 0.96632 0.99226 0.97074 1.21899 0.95136 1.00339 0.93864 0.90823 1.21800 1.00298 1.00387 0.97269 1.22677 0.98571 1.00159 0.95235 0.95689 0.95314 0.90386 0.94592 0.95672 0.93052 0.92051 0.93172 0.93626 0.89485 0.92762 0.92725 0.93466 0.93264 0.93308 0.90623 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.85 10.18 -35.23 -0.36 -8.20 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.13 2.93 4.93 -4.04 -0.02 2.91 16 5 N -0.59 -13.87 1.97 -164.39 -0.32 -14.19 16 6 C -0.24 -6.57 7.50 -15.06 -0.11 -6.68 16 7 H 0.08 2.28 7.51 -52.48 -0.39 1.88 16 8 C 0.04 1.22 5.28 -17.43 -0.09 1.13 16 9 N -0.90 -27.90 13.97 55.49 0.78 -27.12 16 10 Si 0.87 22.51 25.14 -169.99 -4.27 18.23 16 11 H -0.29 -7.42 6.67 56.52 0.38 -7.05 16 12 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.17 3.40 3.42 -66.81 -0.23 3.17 16 15 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 16 C -0.13 -2.56 6.40 -25.08 -0.16 -2.73 16 17 C -0.12 -1.85 6.33 -24.74 -0.16 -2.01 16 18 C -0.09 -1.56 3.46 -88.91 -0.31 -1.86 16 19 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 20 C -0.14 -1.90 9.13 37.15 0.34 -1.56 16 21 C -0.13 -2.33 5.78 -25.56 -0.15 -2.47 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 28 H 0.06 1.51 3.42 -51.92 -0.18 1.33 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.94 6.94 -51.93 -0.36 1.58 16 32 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 37 H 0.08 1.62 7.17 -51.93 -0.37 1.25 16 38 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -30.72 296.13 -6.01 -36.73 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.75 Total: -2.64 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 0.46 Total: -7.27 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.45 Total: -41.31 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.36 Total: -8.20 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.27 Total: 18.23 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.72 -6.01 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616873164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.862 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds