Wall clock time and date at job start Sun Mar 29 2020 22:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99788 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47205 * 64.99922 * 4 3 2 6 6 C 1.36939 * 120.00106 * 269.99846 * 5 4 3 7 7 H 1.08007 * 119.99705 * 141.80525 * 6 5 4 8 8 C 1.38810 * 120.00263 * 321.81127 * 6 5 4 9 9 N 1.31613 * 120.00291 * 156.86938 * 8 6 5 10 10 Si 1.86805 * 119.99644 * 336.86851 * 8 6 5 11 11 H 1.48501 * 109.46895 * 95.43147 * 10 8 6 12 12 H 1.48497 * 109.46800 * 215.42542 * 10 8 6 13 13 H 1.48491 * 109.47165 * 335.42715 * 10 8 6 14 14 C 1.46500 * 120.00029 * 90.00198 * 5 4 3 15 15 H 1.09004 * 110.01497 * 3.14282 * 14 5 4 16 16 C 1.54265 * 110.03416 * 124.53298 * 14 5 4 17 17 C 1.54883 * 104.19634 * 142.89547 * 16 14 5 18 18 C 1.54892 * 102.75063 * 322.06206 * 17 16 14 19 19 H 1.09001 * 110.48181 * 279.26585 * 18 17 16 20 20 C 1.52994 * 110.49019 * 156.75161 * 18 17 16 21 21 C 1.53873 * 110.03198 * 241.75326 * 14 5 4 22 22 H 1.09000 * 109.47163 * 299.99482 * 1 2 3 23 23 H 1.09003 * 109.47093 * 60.00140 * 1 2 3 24 24 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47316 * 300.00026 * 3 2 1 26 26 H 1.09004 * 109.46897 * 60.00291 * 3 2 1 27 27 H 1.08999 * 109.47449 * 185.00451 * 4 3 2 28 28 H 1.09008 * 109.46713 * 304.99903 * 4 3 2 29 29 H 0.96999 * 120.00331 * 179.97438 * 9 8 6 30 30 H 1.09001 * 110.48894 * 261.57765 * 16 14 5 31 31 H 1.08999 * 110.48465 * 24.08541 * 16 14 5 32 32 H 1.09007 * 110.75464 * 80.37266 * 17 16 14 33 33 H 1.09000 * 110.76110 * 203.56199 * 17 16 14 34 34 H 1.09001 * 109.47114 * 61.45548 * 20 18 17 35 35 H 1.08997 * 109.47110 * 181.44986 * 20 18 17 36 36 H 1.08995 * 109.47332 * 301.45320 * 20 18 17 37 37 H 1.08992 * 110.03437 * 0.02562 * 21 14 5 38 38 H 1.09000 * 110.03283 * 121.42949 * 21 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.0969 -0.7968 -1.3369 7 1 3.8121 -1.3093 -2.2440 8 6 4.5856 -1.5183 -0.2563 9 7 4.2947 -2.7959 -0.1324 10 14 5.6562 -0.6758 1.0218 11 1 4.8125 -0.2363 2.1621 12 1 6.6884 -1.6265 1.5073 13 1 6.3185 0.5051 0.4120 14 6 4.2863 1.4008 -2.4148 15 1 4.1892 2.4545 -2.1529 16 6 5.7185 1.1088 -2.9082 17 6 5.6152 1.2026 -4.4508 18 6 4.2322 0.5679 -4.7400 19 1 4.3031 -0.5198 -4.7344 20 6 3.6869 1.0608 -6.0818 21 6 3.3405 1.0577 -3.5790 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8465 -0.8900 26 1 1.6886 1.8464 0.8901 27 1 3.9785 2.1766 0.0890 28 1 3.8514 0.5683 0.8410 29 1 4.6365 -3.3001 0.6225 30 1 6.4135 1.8566 -2.5262 31 1 6.0302 0.1094 -2.6048 32 1 5.6388 2.2424 -4.7770 33 1 6.4125 0.6318 -4.9268 34 1 4.3643 0.7613 -6.8815 35 1 2.7033 0.6247 -6.2565 36 1 3.6044 2.1475 -6.0634 37 1 2.6501 0.2694 -3.2793 38 1 2.7851 1.9450 -3.8827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616873164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:09 Heat of formation + Delta-G solvation = -51.637587 kcal Electronic energy + Delta-G solvation = -17139.942390 eV Core-core repulsion = 14596.134010 eV Total energy + Delta-G solvation = -2543.808381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81242 -38.49345 -36.29356 -33.56985 -31.75068 -30.14423 -28.83762 -27.15393 -26.07917 -24.62567 -23.03032 -21.02130 -20.37453 -18.38920 -17.56506 -17.04121 -16.73510 -16.21917 -15.72824 -15.43747 -15.20082 -14.58168 -14.41456 -14.16164 -13.68166 -13.41266 -13.11611 -12.93888 -12.63602 -12.52595 -12.29003 -12.19347 -11.82975 -11.66050 -11.57493 -11.38894 -11.37302 -11.25434 -11.08622 -10.46732 -10.32531 -8.56317 -8.02498 -5.36250 1.33933 1.43316 1.53749 2.54238 3.14170 3.17084 3.49888 3.90965 3.96308 4.18699 4.34462 4.43348 4.55400 4.57416 4.61794 4.62410 4.71129 4.72502 4.77947 4.85242 4.86977 4.88576 4.96709 5.09439 5.11959 5.20353 5.27304 5.30090 5.45689 5.59245 5.69707 5.75934 6.12444 6.36808 6.60797 7.17875 7.83465 8.22754 9.18862 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.011965 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.700988 B = 2339.569339 C = 3009.503939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.203 4.203 7 H 0.032 0.968 8 C -0.020 4.020 9 N -0.954 5.954 10 Si 0.931 3.069 11 H -0.284 1.284 12 H -0.318 1.318 13 H -0.254 1.254 14 C 0.162 3.838 15 H 0.079 0.921 16 C -0.136 4.136 17 C -0.104 4.104 18 C -0.096 4.096 19 H 0.038 0.962 20 C -0.132 4.132 21 C -0.119 4.119 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.254 0.746 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 13.275 -5.531 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.325 5.325 6 C -0.333 4.333 7 H 0.049 0.951 8 C -0.215 4.215 9 N -0.600 5.600 10 Si 0.761 3.239 11 H -0.212 1.212 12 H -0.248 1.248 13 H -0.177 1.177 14 C 0.057 3.943 15 H 0.097 0.903 16 C -0.176 4.176 17 C -0.142 4.142 18 C -0.114 4.114 19 H 0.057 0.943 20 C -0.189 4.189 21 C -0.159 4.159 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.532 13.007 -5.450 14.328 hybrid contribution 0.181 -0.432 1.009 1.113 sum -2.351 12.575 -4.441 13.542 Atomic orbital electron populations 1.22775 0.81501 1.02332 1.00110 1.88229 1.19723 1.28587 1.95207 1.23245 0.95880 0.84369 0.99412 1.21498 0.92185 0.97396 0.89192 1.44319 1.76317 1.02439 1.09459 1.18142 1.33484 0.81876 0.99827 0.95077 1.25897 1.00109 0.95220 1.00245 1.70030 1.47607 1.10368 1.32007 0.86027 0.79491 0.78381 0.79998 1.21191 1.24750 1.17746 1.21356 0.92694 0.93538 0.86753 0.90267 1.22741 0.97800 1.00887 0.96133 1.22426 0.96057 1.01094 0.94626 1.21872 0.95778 0.98476 0.95320 0.94320 1.21726 1.00348 1.01488 0.95376 1.22564 0.97963 0.99880 0.95464 0.93091 0.93809 0.90739 0.93210 0.92644 0.89369 0.94858 0.93734 0.91924 0.93800 0.89567 0.92124 0.92090 0.93380 0.91297 0.94799 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.40 -17.91 10.18 -148.98 -1.52 -19.43 16 3 C 0.05 1.85 6.28 71.98 0.45 2.30 16 4 C 0.12 5.10 4.93 86.38 0.43 5.53 16 5 N -0.60 -27.78 1.97 -674.01 -1.33 -29.11 16 6 C -0.20 -11.54 7.50 84.03 0.63 -10.91 16 7 H 0.03 2.02 7.51 -2.91 -0.02 2.00 16 8 C -0.02 -1.20 5.28 84.86 0.45 -0.75 16 9 N -0.95 -62.29 13.97 21.65 0.30 -61.98 16 10 Si 0.93 47.75 25.14 68.60 1.72 49.47 16 11 H -0.28 -14.18 6.67 99.48 0.66 -13.51 16 12 H -0.32 -16.80 7.11 99.48 0.71 -16.09 16 13 H -0.25 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.16 6.06 3.42 45.71 0.16 6.22 16 15 H 0.08 2.50 7.81 -2.38 -0.02 2.48 16 16 C -0.14 -4.96 6.40 31.67 0.20 -4.76 16 17 C -0.10 -3.05 6.33 31.88 0.20 -2.84 16 18 C -0.10 -3.06 3.46 -9.68 -0.03 -3.09 16 19 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.13 -3.19 9.13 71.98 0.66 -2.53 16 21 C -0.12 -4.21 5.78 31.35 0.18 -4.03 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.09 2.99 7.91 -2.39 -0.02 2.97 16 28 H 0.03 1.59 3.42 -2.38 -0.01 1.58 16 29 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.97 6.94 -2.39 -0.02 1.95 16 32 H 0.09 2.03 8.06 -2.38 -0.02 2.01 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 37 H 0.03 1.46 7.17 -2.39 -0.02 1.45 16 38 H 0.07 2.12 7.82 -2.39 -0.02 2.10 16 Total: -1.00 -70.23 296.13 4.71 -65.53 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.95 Total: 8.17 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.57 Total: -12.64 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.03 Total: -91.09 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.52 Total: -19.43 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.72 Total: 49.47 kcal Total: -70.23 4.71 -65.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616873164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.888 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds