Wall clock time and date at job start Sun Mar 29 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99694 * 2 1 4 4 C 1.52996 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47432 * 66.30223 * 4 3 2 6 6 C 1.46897 * 110.99556 * 283.30756 * 5 4 3 7 7 C 1.50695 * 109.47168 * 304.58517 * 6 5 4 8 8 H 1.08003 * 120.00213 * 355.32437 * 7 6 5 9 9 C 1.37875 * 120.00239 * 175.32632 * 7 6 5 10 10 N 1.31519 * 120.00457 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99851 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47056 * 270.00218 * 11 9 7 13 13 H 1.48507 * 109.47042 * 30.00093 * 11 9 7 14 14 H 1.48500 * 109.47255 * 150.00174 * 11 9 7 15 15 C 1.46902 * 110.99898 * 159.34866 * 5 4 3 16 16 C 1.53005 * 109.46620 * 197.94912 * 15 5 4 17 17 H 1.08992 * 115.55083 * 330.23862 * 16 15 5 18 18 C 1.52996 * 117.49401 * 115.94393 * 16 15 5 19 19 C 1.52992 * 60.00188 * 107.48727 * 18 16 15 20 20 H 1.09000 * 117.50066 * 107.48453 * 19 18 16 21 21 C 1.53004 * 117.52017 * 252.51962 * 19 18 16 22 22 H 1.08998 * 109.46552 * 299.99486 * 1 2 3 23 23 H 1.08996 * 109.47246 * 59.99884 * 1 2 3 24 24 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47252 * 60.00659 * 3 2 1 26 26 H 1.08998 * 109.47388 * 300.00342 * 3 2 1 27 27 H 1.09005 * 109.47242 * 306.30021 * 4 3 2 28 28 H 1.09005 * 109.47528 * 186.30479 * 4 3 2 29 29 H 1.09007 * 109.46670 * 184.58864 * 6 5 4 30 30 H 1.08999 * 109.47546 * 64.58957 * 6 5 4 31 31 H 0.96996 * 120.00014 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47434 * 317.95077 * 15 5 4 33 33 H 1.09001 * 109.46938 * 77.95594 * 15 5 4 34 34 H 1.09002 * 117.50025 * 214.98029 * 18 16 15 35 35 H 1.09007 * 117.50167 * 359.97438 * 18 16 15 36 36 H 1.08995 * 109.47465 * 128.62822 * 21 19 18 37 37 H 1.08998 * 109.46664 * 248.62927 * 21 19 18 38 38 H 1.09002 * 109.46583 * 8.62218 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9792 0.5913 -1.2692 6 6 3.7419 -0.8583 -1.2837 7 6 4.4123 -1.4890 -0.0906 8 1 5.0225 -0.8873 0.5668 9 6 4.2469 -2.8343 0.1620 10 7 4.8317 -3.3847 1.2035 11 14 3.1910 -3.8750 -0.9745 12 1 1.7866 -3.8653 -0.4921 13 1 3.2459 -3.3173 -2.3498 14 1 3.7012 -5.2696 -0.9851 15 6 5.3930 0.8961 -1.5268 16 6 5.7017 0.6694 -3.0081 17 1 5.1036 -0.0969 -3.5010 18 6 6.1143 1.8867 -3.8380 19 6 7.1547 0.8307 -3.4595 20 1 7.5123 0.1706 -4.2498 21 6 8.1877 1.2056 -2.3950 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.8500 0.5493 0.8274 28 1 3.9784 2.1743 0.1122 29 1 4.1529 -1.2845 -2.1989 30 1 2.6699 -1.0514 -1.2423 31 1 4.7149 -4.3311 1.3813 32 1 5.5934 1.9360 -1.2689 33 1 6.0215 0.2437 -0.9206 34 1 5.7876 1.9215 -4.8773 35 1 6.1654 2.8492 -3.3288 36 1 8.2097 0.4364 -1.6231 37 1 9.1720 1.2857 -2.8563 38 1 7.9174 2.1620 -1.9474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:17 Heat of formation + Delta-G solvation = -17.920404 kcal Electronic energy + Delta-G solvation = -16678.239358 eV Core-core repulsion = 14135.893064 eV Total energy + Delta-G solvation = -2542.346294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.31738 -37.29741 -35.46481 -32.21591 -29.60407 -28.31458 -27.50959 -25.87457 -24.36723 -22.51257 -21.04917 -19.80951 -18.59962 -16.86732 -16.13720 -15.65683 -15.20703 -14.56542 -14.12503 -13.92120 -13.72131 -13.29414 -12.74504 -12.40378 -12.30279 -11.84569 -11.75926 -11.32441 -11.22353 -11.16441 -10.97076 -10.71157 -10.54240 -10.37654 -10.02620 -9.72019 -9.48629 -9.29734 -9.22943 -8.97133 -8.38967 -7.05738 -5.95373 -3.90614 3.40114 3.45533 3.50984 4.19408 4.45033 4.55244 4.86094 5.11204 5.33409 5.41689 5.46584 5.61220 5.63359 5.72091 5.86767 5.90336 5.97905 6.02152 6.05354 6.06182 6.12779 6.16735 6.29564 6.30336 6.35092 6.60225 6.72518 6.85029 6.90076 7.14463 7.47067 7.75321 7.84390 8.19736 8.28365 8.60030 9.06008 9.70158 11.18191 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.010460 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.936773 B = 2676.143124 C = 3566.845876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.074 3.926 4 C 0.052 3.948 5 N -0.531 5.531 6 C 0.150 3.850 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.072 3.928 10 N -0.907 5.907 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.267 1.267 14 H -0.292 1.292 15 C 0.089 3.911 16 C -0.121 4.121 17 H 0.104 0.896 18 C -0.181 4.181 19 C -0.161 4.161 20 H 0.097 0.903 21 C -0.120 4.120 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.260 0.740 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 9.942 -5.993 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.003 4.003 4 C -0.076 4.076 5 N -0.255 5.255 6 C 0.023 3.977 7 C -0.570 4.570 8 H 0.088 0.912 9 C -0.129 4.129 10 N -0.546 5.546 11 Si 0.708 3.292 12 H -0.202 1.202 13 H -0.191 1.191 14 H -0.219 1.219 15 C -0.040 4.040 16 C -0.140 4.140 17 H 0.123 0.877 18 C -0.218 4.218 19 C -0.180 4.180 20 H 0.115 0.885 21 C -0.177 4.177 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.057 9.824 -6.276 11.838 hybrid contribution -0.311 -0.849 0.124 0.912 sum -2.368 8.975 -6.153 11.136 Atomic orbital electron populations 1.22662 0.83384 1.02010 0.98773 1.88260 1.17487 1.27161 1.94872 1.22495 0.94583 0.84832 0.98373 1.22081 0.92696 0.98531 0.94320 1.62407 1.16845 1.15104 1.31099 1.20364 0.98090 0.83170 0.96049 1.21563 1.30326 0.94542 1.10537 0.91196 1.24871 0.95234 0.97916 0.94862 1.69934 1.44612 1.12123 1.27947 0.86784 0.81144 0.79187 0.82108 1.20236 1.19146 1.21889 1.21512 0.90705 0.98764 0.92986 1.22332 0.95791 0.99373 0.96462 0.87749 1.23090 1.04340 0.94102 1.00263 1.22328 0.91466 1.02785 1.01430 0.88530 1.21300 0.97173 1.01309 0.97896 0.95026 0.94904 0.90389 0.94430 0.93776 0.91149 0.91932 0.96352 0.93088 0.93033 0.93018 0.92689 0.89735 0.89397 0.91767 0.92966 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.38 7.96 -35.23 -0.28 -7.66 16 3 C 0.07 1.32 6.26 37.16 0.23 1.55 16 4 C 0.05 1.02 5.35 -3.82 -0.02 1.00 16 5 N -0.53 -11.21 4.58 -236.06 -1.08 -12.29 16 6 C 0.15 3.70 3.71 -4.98 -0.02 3.68 16 7 C -0.53 -15.01 7.71 -34.44 -0.27 -15.27 16 8 H 0.07 2.13 6.36 -52.48 -0.33 1.80 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 11 Si 0.88 22.50 27.38 -169.99 -4.65 17.85 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.60 6.68 56.52 0.38 -6.23 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 15 C 0.09 1.70 4.21 -3.82 -0.02 1.69 16 16 C -0.12 -2.11 5.67 -90.62 -0.51 -2.62 16 17 H 0.10 1.99 6.93 -51.93 -0.36 1.63 16 18 C -0.18 -2.58 9.82 -26.74 -0.26 -2.85 16 19 C -0.16 -2.41 6.41 -90.62 -0.58 -2.99 16 20 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 21 C -0.12 -1.66 9.20 37.16 0.34 -1.31 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.62 5.87 -51.93 -0.30 1.32 16 28 H 0.06 1.05 7.60 -51.93 -0.39 0.65 16 29 H 0.02 0.47 6.07 -51.92 -0.32 0.15 16 30 H 0.05 1.31 4.92 -51.93 -0.26 1.06 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.05 0.89 7.36 -51.93 -0.38 0.51 16 33 H 0.06 1.21 6.35 -51.93 -0.33 0.88 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.18 7.94 -51.92 -0.41 0.77 16 36 H 0.06 0.98 7.85 -51.93 -0.41 0.57 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -31.12 298.18 -7.28 -38.40 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.45 Total: 0.20 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.09 Total: -13.53 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.31 Total: -39.76 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.28 Total: -7.66 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.65 Total: 17.85 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.12 -7.28 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.484 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds