Wall clock time and date at job start Sun Mar 29 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99694 * 2 1 4 4 C 1.52996 * 109.46966 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47432 * 66.30223 * 4 3 2 6 6 C 1.46897 * 110.99556 * 283.30756 * 5 4 3 7 7 C 1.50695 * 109.47168 * 304.58517 * 6 5 4 8 8 H 1.08003 * 120.00213 * 355.32437 * 7 6 5 9 9 C 1.37875 * 120.00239 * 175.32632 * 7 6 5 10 10 N 1.31519 * 120.00457 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99851 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47056 * 270.00218 * 11 9 7 13 13 H 1.48507 * 109.47042 * 30.00093 * 11 9 7 14 14 H 1.48500 * 109.47255 * 150.00174 * 11 9 7 15 15 C 1.46902 * 110.99898 * 159.34866 * 5 4 3 16 16 C 1.53005 * 109.46620 * 197.94912 * 15 5 4 17 17 H 1.08992 * 115.55083 * 330.23862 * 16 15 5 18 18 C 1.52996 * 117.49401 * 115.94393 * 16 15 5 19 19 C 1.52992 * 60.00188 * 107.48727 * 18 16 15 20 20 H 1.09000 * 117.50066 * 107.48453 * 19 18 16 21 21 C 1.53004 * 117.52017 * 252.51962 * 19 18 16 22 22 H 1.08998 * 109.46552 * 299.99486 * 1 2 3 23 23 H 1.08996 * 109.47246 * 59.99884 * 1 2 3 24 24 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47252 * 60.00659 * 3 2 1 26 26 H 1.08998 * 109.47388 * 300.00342 * 3 2 1 27 27 H 1.09005 * 109.47242 * 306.30021 * 4 3 2 28 28 H 1.09005 * 109.47528 * 186.30479 * 4 3 2 29 29 H 1.09007 * 109.46670 * 184.58864 * 6 5 4 30 30 H 1.08999 * 109.47546 * 64.58957 * 6 5 4 31 31 H 0.96996 * 120.00014 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47434 * 317.95077 * 15 5 4 33 33 H 1.09001 * 109.46938 * 77.95594 * 15 5 4 34 34 H 1.09002 * 117.50025 * 214.98029 * 18 16 15 35 35 H 1.09007 * 117.50167 * 359.97438 * 18 16 15 36 36 H 1.08995 * 109.47465 * 128.62822 * 21 19 18 37 37 H 1.08998 * 109.46664 * 248.62927 * 21 19 18 38 38 H 1.09002 * 109.46583 * 8.62218 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9792 0.5913 -1.2692 6 6 3.7419 -0.8583 -1.2837 7 6 4.4123 -1.4890 -0.0906 8 1 5.0225 -0.8873 0.5668 9 6 4.2469 -2.8343 0.1620 10 7 4.8317 -3.3847 1.2035 11 14 3.1910 -3.8750 -0.9745 12 1 1.7866 -3.8653 -0.4921 13 1 3.2459 -3.3173 -2.3498 14 1 3.7012 -5.2696 -0.9851 15 6 5.3930 0.8961 -1.5268 16 6 5.7017 0.6694 -3.0081 17 1 5.1036 -0.0969 -3.5010 18 6 6.1143 1.8867 -3.8380 19 6 7.1547 0.8307 -3.4595 20 1 7.5123 0.1706 -4.2498 21 6 8.1877 1.2056 -2.3950 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.8500 0.5493 0.8274 28 1 3.9784 2.1743 0.1122 29 1 4.1529 -1.2845 -2.1989 30 1 2.6699 -1.0514 -1.2423 31 1 4.7149 -4.3311 1.3813 32 1 5.5934 1.9360 -1.2689 33 1 6.0215 0.2437 -0.9206 34 1 5.7876 1.9215 -4.8773 35 1 6.1654 2.8492 -3.3288 36 1 8.2097 0.4364 -1.6231 37 1 9.1720 1.2857 -2.8563 38 1 7.9174 2.1620 -1.9474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617099107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:17 Heat of formation + Delta-G solvation = -39.057117 kcal Electronic energy + Delta-G solvation = -16679.155914 eV Core-core repulsion = 14135.893064 eV Total energy + Delta-G solvation = -2543.262850 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79744 -38.65213 -37.04581 -34.42030 -31.12606 -29.90843 -29.03147 -27.16711 -26.07476 -24.26336 -22.28035 -21.45381 -20.12894 -18.93614 -17.56808 -17.13307 -16.61360 -16.34093 -15.80676 -15.59361 -15.20799 -14.60424 -14.44104 -14.06108 -13.73523 -13.29924 -13.23784 -13.00698 -12.81975 -12.56355 -12.36701 -12.32136 -12.19297 -11.95615 -11.83704 -11.58038 -11.41611 -10.73629 -10.67525 -10.52641 -10.30036 -8.86930 -8.23691 -6.22370 1.35052 1.36878 1.47954 2.39498 2.93007 3.10873 3.15840 3.37268 3.89616 4.05696 4.18588 4.31624 4.44902 4.49133 4.53560 4.57696 4.60868 4.69073 4.76153 4.79612 4.88059 4.98060 4.98156 5.05107 5.10113 5.20962 5.23003 5.24777 5.41367 5.47222 5.49194 5.64290 6.18666 6.43518 6.47118 6.62684 6.80637 7.41684 8.93137 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.010460 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.936773 B = 2676.143124 C = 3566.845876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.050 3.950 5 N -0.525 5.525 6 C 0.165 3.835 7 C -0.521 4.521 8 H 0.032 0.968 9 C 0.011 3.989 10 N -0.953 5.953 11 Si 0.943 3.057 12 H -0.269 1.269 13 H -0.253 1.253 14 H -0.288 1.288 15 C 0.095 3.905 16 C -0.154 4.154 17 H 0.084 0.916 18 C -0.151 4.151 19 C -0.159 4.159 20 H 0.105 0.895 21 C -0.118 4.118 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.011 0.989 30 H 0.048 0.952 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.015 0.985 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 11.599 -7.886 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.000 4.000 4 C -0.078 4.078 5 N -0.248 5.248 6 C 0.037 3.963 7 C -0.560 4.560 8 H 0.051 0.949 9 C -0.185 4.185 10 N -0.595 5.595 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.177 1.177 14 H -0.214 1.214 15 C -0.033 4.033 16 C -0.173 4.173 17 H 0.102 0.898 18 C -0.188 4.188 19 C -0.178 4.178 20 H 0.123 0.877 21 C -0.175 4.175 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.112 0.888 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.971 11.507 -8.181 14.428 hybrid contribution 0.019 -1.266 0.770 1.482 sum -2.952 10.242 -7.411 12.982 Atomic orbital electron populations 1.22832 0.81062 1.02579 1.00711 1.88166 1.20231 1.28873 1.95261 1.22547 0.92751 0.84358 1.00386 1.22191 0.94825 0.98962 0.91867 1.62452 1.18001 1.12595 1.31721 1.20088 0.97154 0.85299 0.93712 1.21781 1.29103 0.94293 1.10793 0.94948 1.25740 0.96836 0.99435 0.96509 1.70078 1.46755 1.12554 1.30149 0.85774 0.79453 0.77438 0.80582 1.19403 1.17695 1.21403 1.21477 0.88842 0.99017 0.93933 1.22182 0.97958 1.01692 0.95466 0.89822 1.23158 1.01717 0.93316 1.00561 1.22468 0.90464 1.03289 1.01558 0.87679 1.21300 0.98253 1.00812 0.97182 0.93048 0.92892 0.90628 0.91919 0.91989 0.95575 0.88788 0.97050 0.93380 0.92976 0.90718 0.96708 0.87942 0.87973 0.94228 0.90672 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -16.24 7.96 -148.98 -1.19 -17.42 16 3 C 0.08 2.56 6.26 71.98 0.45 3.01 16 4 C 0.05 1.93 5.35 86.30 0.46 2.40 16 5 N -0.52 -22.03 4.58 -900.76 -4.12 -26.15 16 6 C 0.16 8.23 3.71 85.56 0.32 8.55 16 7 C -0.52 -30.56 7.71 25.60 0.20 -30.37 16 8 H 0.03 2.10 6.36 -2.91 -0.02 2.08 16 9 C 0.01 0.69 5.47 84.65 0.46 1.15 16 10 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 11 Si 0.94 46.96 27.38 68.60 1.88 48.84 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.25 -11.93 6.68 99.48 0.66 -11.27 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 15 C 0.10 3.66 4.21 86.30 0.36 4.03 16 16 C -0.15 -5.24 5.67 -10.79 -0.06 -5.30 16 17 H 0.08 3.18 6.93 -2.39 -0.02 3.16 16 18 C -0.15 -3.82 9.82 30.59 0.30 -3.52 16 19 C -0.16 -4.46 6.41 -10.80 -0.07 -4.53 16 20 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 21 C -0.12 -3.11 9.20 71.98 0.66 -2.45 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.03 1.25 5.87 -2.38 -0.01 1.23 16 28 H 0.09 2.99 7.60 -2.38 -0.02 2.97 16 29 H 0.01 0.59 6.07 -2.38 -0.01 0.57 16 30 H 0.05 2.47 4.92 -2.39 -0.01 2.46 16 31 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.07 2.47 7.36 -2.39 -0.02 2.45 16 33 H 0.01 0.68 6.35 -2.39 -0.02 0.67 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.33 7.94 -2.38 -0.02 2.31 16 36 H 0.04 1.22 7.85 -2.39 -0.02 1.20 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.49 7.90 -2.39 -0.02 1.47 16 Total: -1.00 -69.47 298.18 2.17 -67.30 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.97 Total: 13.73 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.33 Total: -25.08 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.82 Total: -87.37 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.19 Total: -17.42 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.84 kcal Total: -69.47 2.17 -67.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.241 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds