Wall clock time and date at job start Sun Mar 29 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00524 * 2 1 4 4 C 1.53001 * 109.47372 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47051 * 66.86345 * 4 3 2 6 6 C 1.46900 * 110.99828 * 158.91971 * 5 4 3 7 7 C 1.50700 * 109.47049 * 195.80327 * 6 5 4 8 8 H 1.08001 * 119.99909 * 4.99584 * 7 6 5 9 9 C 1.37871 * 120.00018 * 184.99257 * 7 6 5 10 10 N 1.31512 * 120.00291 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46993 * 89.99822 * 11 9 7 13 13 H 1.48496 * 109.46940 * 209.99890 * 11 9 7 14 14 H 1.48497 * 109.46819 * 329.99786 * 11 9 7 15 15 C 1.46894 * 110.99836 * 282.87169 * 5 4 3 16 16 C 1.52997 * 109.47165 * 296.90697 * 15 5 4 17 17 H 1.09003 * 115.55565 * 28.27916 * 16 15 5 18 18 C 1.53073 * 117.53240 * 242.56247 * 16 15 5 19 19 C 1.53001 * 59.98749 * 252.52989 * 18 16 15 20 20 H 1.08995 * 117.49636 * 107.50007 * 19 18 16 21 21 C 1.53001 * 117.50004 * 252.49787 * 19 18 16 22 22 H 1.09000 * 109.47017 * 300.00091 * 1 2 3 23 23 H 1.09009 * 109.46718 * 59.99893 * 1 2 3 24 24 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47354 * 59.99817 * 3 2 1 26 26 H 1.09007 * 109.47147 * 300.00026 * 3 2 1 27 27 H 1.08995 * 109.47299 * 306.86020 * 4 3 2 28 28 H 1.09008 * 109.46983 * 186.86175 * 4 3 2 29 29 H 1.09002 * 109.47047 * 315.80527 * 6 5 4 30 30 H 1.08998 * 109.47339 * 75.80211 * 6 5 4 31 31 H 0.96999 * 120.00275 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47662 * 176.90370 * 15 5 4 33 33 H 1.09000 * 109.47452 * 56.90842 * 15 5 4 34 34 H 1.09001 * 117.49463 * 145.04648 * 18 16 15 35 35 H 1.08998 * 117.51377 * 0.02562 * 18 16 15 36 36 H 1.08996 * 109.47001 * 128.74243 * 21 19 18 37 37 H 1.08994 * 109.47135 * 248.74885 * 21 19 18 38 38 H 1.09007 * 109.46877 * 8.74917 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9812 0.6031 -1.2727 6 6 5.3926 0.9187 -1.5301 7 6 5.7093 0.6575 -2.9801 8 1 4.9220 0.3711 -3.6617 9 6 7.0041 0.7841 -3.4365 10 7 7.9627 1.1334 -2.6067 11 14 7.3966 0.4609 -5.2341 12 1 7.2651 1.7238 -6.0043 13 1 8.7861 -0.0492 -5.3534 14 1 6.4506 -0.5487 -5.7735 15 6 3.7533 -0.8479 -1.2972 16 6 4.5937 -1.5146 -0.2064 17 1 4.8111 -0.8956 0.6641 18 6 5.6671 -2.5115 -0.6503 19 6 4.3895 -3.0132 0.0259 20 1 3.6569 -3.5240 -0.5988 21 6 4.5056 -3.5278 1.4620 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6887 1.8464 -0.8900 27 1 3.8487 0.5415 0.8231 28 1 3.9783 2.1730 0.1234 29 1 5.5778 1.9682 -1.3011 30 1 6.0255 0.2925 -0.9014 31 1 8.8737 1.2221 -2.9278 32 1 4.0409 -1.2445 -2.2709 33 1 2.6977 -1.0530 -1.1189 34 1 6.5902 -2.5478 -0.0718 35 1 5.7750 -2.6922 -1.7198 36 1 3.7586 -3.0365 2.0855 37 1 4.3396 -4.6049 1.4765 38 1 5.5015 -3.3083 1.8472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:19 Heat of formation + Delta-G solvation = -22.361430 kcal Electronic energy + Delta-G solvation = -16607.742054 eV Core-core repulsion = 14065.203183 eV Total energy + Delta-G solvation = -2542.538871 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.48935 -37.24245 -35.24240 -32.48178 -29.72228 -28.43111 -26.70972 -26.18588 -24.42391 -21.98608 -21.39233 -20.15935 -18.94613 -16.25956 -16.16177 -15.84003 -14.95927 -14.66426 -14.40357 -14.12558 -13.70676 -13.01923 -12.82509 -12.45404 -12.16019 -11.87706 -11.57677 -11.45278 -11.29433 -11.01327 -10.87354 -10.85859 -10.63206 -10.45726 -10.23878 -9.82468 -9.44749 -9.36911 -9.04526 -8.80510 -8.33661 -7.05803 -5.93590 -3.93456 3.36346 3.42278 3.46323 4.11653 4.40105 4.49712 5.06470 5.22812 5.37099 5.41356 5.47819 5.50449 5.56423 5.67697 5.69239 5.76784 5.79528 5.85183 6.08869 6.11824 6.19712 6.27408 6.30906 6.43802 6.58523 6.63253 6.79212 6.80565 7.18115 7.38353 7.47912 7.55220 7.92424 8.22437 8.35277 8.68048 9.14909 9.69917 11.16980 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.008584 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.586321 B = 3261.171355 C = 4025.796910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.069 3.931 4 C 0.049 3.951 5 N -0.530 5.530 6 C 0.188 3.812 7 C -0.497 4.497 8 H 0.060 0.940 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.092 3.908 16 C -0.157 4.157 17 H 0.093 0.907 18 C -0.163 4.163 19 C -0.166 4.166 20 H 0.096 0.904 21 C -0.116 4.116 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.007 0.993 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.594 -4.282 6.933 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.008 4.008 4 C -0.080 4.080 5 N -0.252 5.252 6 C 0.063 3.937 7 C -0.536 4.536 8 H 0.079 0.921 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.036 4.036 16 C -0.177 4.177 17 H 0.111 0.889 18 C -0.200 4.200 19 C -0.185 4.185 20 H 0.114 0.886 21 C -0.173 4.173 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.561 -4.176 6.548 13.109 hybrid contribution 0.745 -0.184 -0.292 0.821 sum -9.816 -4.359 6.255 12.429 Atomic orbital electron populations 1.22664 0.82612 1.02013 0.99344 1.87983 1.18354 1.28353 1.95092 1.22676 0.94575 0.84280 0.99232 1.22165 0.92439 1.00048 0.93371 1.62330 1.24194 1.10386 1.28333 1.19791 0.81358 0.95659 0.96865 1.21136 0.93035 1.45207 0.94198 0.92140 1.24948 0.96333 0.95762 0.97511 1.69957 1.00763 1.48798 1.34509 0.86580 0.77363 0.78438 0.85511 1.20797 1.21441 1.19936 1.21860 0.98334 0.87248 0.96172 1.23039 1.02094 0.90753 1.01798 0.88933 1.23056 0.92208 1.03932 1.00765 1.22313 1.01227 0.97862 0.97117 0.88593 1.21297 1.01184 0.99982 0.94878 0.94882 0.94403 0.90299 0.94251 0.92715 0.94357 0.90400 0.96322 0.97555 0.93151 0.91013 0.89947 0.89922 0.88829 0.92789 0.92967 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.96 7.90 -35.23 -0.28 -6.23 16 3 C 0.07 1.07 6.25 37.16 0.23 1.30 16 4 C 0.05 0.89 5.40 -3.82 -0.02 0.87 16 5 N -0.53 -11.62 4.58 -236.07 -1.08 -12.70 16 6 C 0.19 4.91 4.59 -4.98 -0.02 4.89 16 7 C -0.50 -14.08 8.51 -34.44 -0.29 -14.38 16 8 H 0.06 1.72 7.66 -52.49 -0.40 1.32 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 11 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.09 1.88 5.28 -3.83 -0.02 1.86 16 16 C -0.16 -2.99 3.66 -90.58 -0.33 -3.33 16 17 H 0.09 1.84 6.20 -51.93 -0.32 1.52 16 18 C -0.16 -3.06 9.77 -26.69 -0.26 -3.33 16 19 C -0.17 -2.70 6.13 -90.61 -0.56 -3.26 16 20 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 21 C -0.12 -1.60 10.19 37.16 0.38 -1.22 16 22 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.70 5.80 -51.93 -0.30 0.40 16 28 H 0.08 1.40 7.62 -51.92 -0.40 1.00 16 29 H 0.02 0.52 7.67 -51.93 -0.40 0.12 16 30 H 0.01 0.18 6.70 -51.93 -0.35 -0.17 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 33 H 0.08 1.60 5.41 -51.93 -0.28 1.32 16 34 H 0.08 1.54 8.05 -51.93 -0.42 1.12 16 35 H 0.09 1.87 8.03 -51.93 -0.42 1.45 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.70 7.90 -51.92 -0.41 0.29 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -30.02 304.47 -7.51 -37.53 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.58 Total: -0.33 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 0.12 Total: -13.62 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.34 Total: -38.89 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.28 Total: -6.23 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.02 -7.51 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.169 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds