Wall clock time and date at job start Sun Mar 29 2020 22:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00524 * 2 1 4 4 C 1.53001 * 109.47372 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47051 * 66.86345 * 4 3 2 6 6 C 1.46900 * 110.99828 * 158.91971 * 5 4 3 7 7 C 1.50700 * 109.47049 * 195.80327 * 6 5 4 8 8 H 1.08001 * 119.99909 * 4.99584 * 7 6 5 9 9 C 1.37871 * 120.00018 * 184.99257 * 7 6 5 10 10 N 1.31512 * 120.00291 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46993 * 89.99822 * 11 9 7 13 13 H 1.48496 * 109.46940 * 209.99890 * 11 9 7 14 14 H 1.48497 * 109.46819 * 329.99786 * 11 9 7 15 15 C 1.46894 * 110.99836 * 282.87169 * 5 4 3 16 16 C 1.52997 * 109.47165 * 296.90697 * 15 5 4 17 17 H 1.09003 * 115.55565 * 28.27916 * 16 15 5 18 18 C 1.53073 * 117.53240 * 242.56247 * 16 15 5 19 19 C 1.53001 * 59.98749 * 252.52989 * 18 16 15 20 20 H 1.08995 * 117.49636 * 107.50007 * 19 18 16 21 21 C 1.53001 * 117.50004 * 252.49787 * 19 18 16 22 22 H 1.09000 * 109.47017 * 300.00091 * 1 2 3 23 23 H 1.09009 * 109.46718 * 59.99893 * 1 2 3 24 24 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47354 * 59.99817 * 3 2 1 26 26 H 1.09007 * 109.47147 * 300.00026 * 3 2 1 27 27 H 1.08995 * 109.47299 * 306.86020 * 4 3 2 28 28 H 1.09008 * 109.46983 * 186.86175 * 4 3 2 29 29 H 1.09002 * 109.47047 * 315.80527 * 6 5 4 30 30 H 1.08998 * 109.47339 * 75.80211 * 6 5 4 31 31 H 0.96999 * 120.00275 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47662 * 176.90370 * 15 5 4 33 33 H 1.09000 * 109.47452 * 56.90842 * 15 5 4 34 34 H 1.09001 * 117.49463 * 145.04648 * 18 16 15 35 35 H 1.08998 * 117.51377 * 0.02562 * 18 16 15 36 36 H 1.08996 * 109.47001 * 128.74243 * 21 19 18 37 37 H 1.08994 * 109.47135 * 248.74885 * 21 19 18 38 38 H 1.09007 * 109.46877 * 8.74917 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9812 0.6031 -1.2727 6 6 5.3926 0.9187 -1.5301 7 6 5.7093 0.6575 -2.9801 8 1 4.9220 0.3711 -3.6617 9 6 7.0041 0.7841 -3.4365 10 7 7.9627 1.1334 -2.6067 11 14 7.3966 0.4609 -5.2341 12 1 7.2651 1.7238 -6.0043 13 1 8.7861 -0.0492 -5.3534 14 1 6.4506 -0.5487 -5.7735 15 6 3.7533 -0.8479 -1.2972 16 6 4.5937 -1.5146 -0.2064 17 1 4.8111 -0.8956 0.6641 18 6 5.6671 -2.5115 -0.6503 19 6 4.3895 -3.0132 0.0259 20 1 3.6569 -3.5240 -0.5988 21 6 4.5056 -3.5278 1.4620 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6887 1.8464 -0.8900 27 1 3.8487 0.5415 0.8231 28 1 3.9783 2.1730 0.1234 29 1 5.5778 1.9682 -1.3011 30 1 6.0255 0.2925 -0.9014 31 1 8.8737 1.2221 -2.9278 32 1 4.0409 -1.2445 -2.2709 33 1 2.6977 -1.0530 -1.1189 34 1 6.5902 -2.5478 -0.0718 35 1 5.7750 -2.6922 -1.7198 36 1 3.7586 -3.0365 2.0855 37 1 4.3396 -4.6049 1.4765 38 1 5.5015 -3.3083 1.8472 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617099109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:18 Heat of formation + Delta-G solvation = -41.380782 kcal Electronic energy + Delta-G solvation = -16608.566795 eV Core-core repulsion = 14065.203183 eV Total energy + Delta-G solvation = -2543.363612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99330 -38.48435 -36.84453 -34.61361 -31.17409 -29.93286 -28.44727 -27.30729 -26.10828 -23.69300 -23.04955 -21.52962 -20.55594 -18.33898 -17.50602 -17.15871 -16.65675 -16.17280 -15.96988 -15.41216 -15.29025 -14.64521 -14.31685 -13.87909 -13.68519 -13.34844 -13.08433 -12.90401 -12.77731 -12.65785 -12.57080 -12.36297 -12.23224 -12.15936 -11.86620 -11.78952 -11.20124 -10.79983 -10.58135 -10.52611 -10.22465 -8.84222 -8.14288 -6.22736 1.40230 1.41108 1.52145 2.42367 2.93286 3.01893 3.17855 3.45271 3.83544 4.06323 4.11666 4.28037 4.37605 4.47191 4.48261 4.61441 4.64652 4.75677 4.77314 4.84151 4.90666 4.94215 4.98133 5.03184 5.09383 5.17517 5.20408 5.34540 5.42176 5.46079 5.57050 5.72099 6.16121 6.36946 6.48969 6.75050 6.94018 7.45928 8.95710 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.008584 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.586321 B = 3261.171355 C = 4025.796910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.079 3.921 4 C 0.046 3.954 5 N -0.538 5.538 6 C 0.206 3.794 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.960 3.040 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.101 3.899 16 C -0.171 4.171 17 H 0.083 0.917 18 C -0.182 4.182 19 C -0.131 4.131 20 H 0.109 0.891 21 C -0.114 4.114 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.075 0.925 29 H -0.006 1.006 30 H -0.018 1.018 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 -5.189 7.196 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.002 3.998 4 C -0.083 4.083 5 N -0.261 5.261 6 C 0.080 3.920 7 C -0.550 4.550 8 H 0.072 0.928 9 C -0.193 4.193 10 N -0.574 5.574 11 Si 0.785 3.215 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.027 4.027 16 C -0.191 4.191 17 H 0.101 0.899 18 C -0.219 4.219 19 C -0.150 4.150 20 H 0.127 0.873 21 C -0.171 4.171 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.000 1.000 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.152 -5.086 6.820 14.834 hybrid contribution 1.173 0.101 -0.325 1.222 sum -10.978 -4.984 6.495 13.695 Atomic orbital electron populations 1.22867 0.80306 1.03401 1.00436 1.87900 1.20797 1.28276 1.95311 1.22504 0.92091 0.84703 1.00496 1.22260 0.94936 0.99537 0.91527 1.62257 1.21201 1.11736 1.30895 1.19408 0.83649 0.93435 0.95489 1.21394 0.93208 1.45228 0.95211 0.92779 1.25784 0.96123 0.95341 1.02036 1.70077 1.01158 1.49584 1.36598 0.85523 0.77285 0.78621 0.80044 1.19919 1.20844 1.19213 1.21743 0.99332 0.86327 0.95273 1.22907 1.02641 0.92400 1.01164 0.89862 1.23010 0.93304 1.05554 1.00011 1.22438 0.98802 0.95163 0.98613 0.87339 1.21330 1.01434 1.01571 0.92791 0.93009 0.94043 0.88854 0.91134 0.93196 0.94319 0.90650 0.98822 1.00022 0.92952 0.93727 0.88385 0.90254 0.90640 0.91759 0.90479 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -11.79 7.90 -148.98 -1.18 -12.97 16 3 C 0.08 2.30 6.25 71.98 0.45 2.76 16 4 C 0.05 1.67 5.40 86.30 0.47 2.14 16 5 N -0.54 -24.07 4.58 -900.80 -4.12 -28.20 16 6 C 0.21 11.20 4.59 85.56 0.39 11.59 16 7 C -0.51 -29.78 8.51 25.60 0.22 -29.56 16 8 H 0.05 3.15 7.66 -2.91 -0.02 3.13 16 9 C 0.00 0.28 5.46 84.65 0.46 0.74 16 10 N -0.93 -57.05 13.29 21.44 0.28 -56.76 16 11 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 C 0.10 4.18 5.28 86.30 0.46 4.63 16 16 C -0.17 -6.57 3.66 -10.77 -0.04 -6.61 16 17 H 0.08 3.35 6.20 -2.39 -0.01 3.34 16 18 C -0.18 -6.97 9.77 30.62 0.30 -6.67 16 19 C -0.13 -4.07 6.13 -10.79 -0.07 -4.14 16 20 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 21 C -0.11 -2.83 10.19 71.98 0.73 -2.10 16 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.04 0.81 8.14 -2.38 -0.02 0.80 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.04 1.42 5.80 -2.39 -0.01 1.40 16 28 H 0.08 2.75 7.62 -2.38 -0.02 2.73 16 29 H -0.01 -0.37 7.67 -2.39 -0.02 -0.38 16 30 H -0.02 -1.05 6.70 -2.39 -0.02 -1.07 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.04 2.05 7.09 -2.39 -0.02 2.03 16 33 H 0.10 3.73 5.41 -2.39 -0.01 3.71 16 34 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 35 H 0.08 3.13 8.03 -2.39 -0.02 3.11 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.23 7.90 -2.38 -0.02 1.21 16 Total: -1.00 -65.25 304.47 2.63 -62.61 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.00 Total: 13.22 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 4.62 Total: -25.44 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.84 Total: -84.96 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.18 Total: -12.97 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -65.25 2.63 -62.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.233 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds